Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2008

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2007 and GFF2008 are separated by 47 nucleotidesGFF2008 and GFF2009 are separated by 243 nucleotides GFF2007 - FIG00733146: hypothetical protein, at 18,215 to 19,072 GFF2007 GFF2008 - probable membrane protein yjeI, at 19,120 to 19,473 GFF2008 GFF2009 - Heat shock protein 60 family chaperone GroEL, at 19,717 to 21,363 GFF2009 Position (kb) 19 20Strain fitness (log2 ratio) -2 -1 0 1 2 3at 18.136 kb on - strandat 18.266 kb on - strandat 18.381 kb on + strand, within GFF2007at 18.445 kb on + strand, within GFF2007at 18.445 kb on + strand, within GFF2007at 18.758 kb on + strand, within GFF2007at 18.837 kb on + strand, within GFF2007at 18.887 kb on - strand, within GFF2007at 19.036 kb on + strandat 19.041 kb on + strandat 19.041 kb on + strandat 19.076 kb on + strandat 19.119 kb on - strandat 19.119 kb on - strandat 19.135 kb on - strandat 19.201 kb on - strand, within GFF2008at 19.205 kb on - strand, within GFF2008at 19.363 kb on - strand, within GFF2008at 19.526 kb on - strandat 19.541 kb on - strandat 19.593 kb on + strandat 19.593 kb on + strandat 19.661 kb on - strandat 19.718 kb on + strandat 19.719 kb on - strandat 19.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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18,136 - -2.7
18,266 - +1.1
18,381 + GFF2007 0.19 -0.1
18,445 + GFF2007 0.27 -0.0
18,445 + GFF2007 0.27 -0.1
18,758 + GFF2007 0.63 -0.8
18,837 + GFF2007 0.72 -0.0
18,887 - GFF2007 0.78 -0.2
19,036 + +0.5
19,041 + -0.1
19,041 + +0.5
19,076 + +0.1
19,119 - -0.7
19,119 - -0.6
19,135 - -0.0
19,201 - GFF2008 0.23 -2.7
19,205 - GFF2008 0.24 -0.9
19,363 - GFF2008 0.69 +0.1
19,526 - +0.0
19,541 - -0.0
19,593 + +0.7
19,593 + -0.5
19,661 - +1.3
19,718 + +3.1
19,719 - -0.4
19,744 - -0.8

Or see this region's nucleotide sequence