Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1801

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1800 and B158DRAFT_1801 are separated by 53 nucleotidesB158DRAFT_1801 and B158DRAFT_1802 are separated by 33 nucleotides B158DRAFT_1800: B158DRAFT_1800 - transcription-repair coupling factor, at 1,896,756 to 1,900,178 _1800 B158DRAFT_1801: B158DRAFT_1801 - Protein of unknown function (DUF2803)., at 1,900,232 to 1,901,002 _1801 B158DRAFT_1802: B158DRAFT_1802 - Saccharopine dehydrogenase and related proteins, at 1,901,036 to 1,902,178 _1802 Position (kb) 1900 1901 1902Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1899.238 kb on - strand, within B158DRAFT_1800at 1899.252 kb on + strand, within B158DRAFT_1800at 1899.292 kb on + strand, within B158DRAFT_1800at 1899.300 kb on - strand, within B158DRAFT_1800at 1899.300 kb on - strand, within B158DRAFT_1800at 1899.302 kb on + strand, within B158DRAFT_1800at 1899.302 kb on + strand, within B158DRAFT_1800at 1899.302 kb on + strand, within B158DRAFT_1800at 1899.310 kb on - strand, within B158DRAFT_1800at 1899.310 kb on - strand, within B158DRAFT_1800at 1899.310 kb on - strand, within B158DRAFT_1800at 1899.336 kb on + strand, within B158DRAFT_1800at 1899.336 kb on + strand, within B158DRAFT_1800at 1899.336 kb on + strand, within B158DRAFT_1800at 1899.341 kb on + strand, within B158DRAFT_1800at 1899.344 kb on - strand, within B158DRAFT_1800at 1899.344 kb on - strand, within B158DRAFT_1800at 1899.349 kb on - strand, within B158DRAFT_1800at 1899.449 kb on - strand, within B158DRAFT_1800at 1899.473 kb on + strand, within B158DRAFT_1800at 1899.476 kb on - strand, within B158DRAFT_1800at 1899.549 kb on - strand, within B158DRAFT_1800at 1899.560 kb on + strand, within B158DRAFT_1800at 1899.568 kb on - strand, within B158DRAFT_1800at 1899.571 kb on + strand, within B158DRAFT_1800at 1899.578 kb on - strand, within B158DRAFT_1800at 1899.579 kb on - strand, within B158DRAFT_1800at 1899.579 kb on - strand, within B158DRAFT_1800at 1899.593 kb on - strand, within B158DRAFT_1800at 1899.628 kb on - strand, within B158DRAFT_1800at 1899.647 kb on - strand, within B158DRAFT_1800at 1899.647 kb on - strand, within B158DRAFT_1800at 1899.712 kb on + strand, within B158DRAFT_1800at 1899.782 kb on - strand, within B158DRAFT_1800at 1899.812 kb on - strand, within B158DRAFT_1800at 1899.830 kb on - strand, within B158DRAFT_1800at 1899.952 kb on + strandat 1899.952 kb on + strandat 1899.960 kb on - strandat 1899.960 kb on - strandat 1899.960 kb on - strandat 1899.960 kb on - strandat 1899.994 kb on - strandat 1899.994 kb on - strandat 1900.014 kb on + strandat 1900.014 kb on + strandat 1900.014 kb on + strandat 1900.022 kb on - strandat 1900.030 kb on - strandat 1900.055 kb on + strandat 1900.060 kb on + strandat 1900.060 kb on + strandat 1900.060 kb on + strandat 1900.060 kb on + strandat 1900.061 kb on + strandat 1900.061 kb on + strandat 1900.061 kb on + strandat 1900.061 kb on + strandat 1900.061 kb on + strandat 1900.061 kb on + strandat 1900.061 kb on + strandat 1900.068 kb on - strandat 1900.069 kb on - strandat 1900.069 kb on - strandat 1900.069 kb on - strandat 1900.069 kb on - strandat 1900.069 kb on - strandat 1900.069 kb on - strandat 1900.069 kb on - strandat 1900.181 kb on + strandat 1900.213 kb on - strandat 1900.213 kb on - strandat 1900.213 kb on - strandat 1900.223 kb on + strandat 1900.325 kb on + strand, within B158DRAFT_1801at 1900.398 kb on + strand, within B158DRAFT_1801at 1900.962 kb on - strandat 1900.982 kb on + strandat 1900.982 kb on + strandat 1900.982 kb on + strandat 1900.990 kb on - strandat 1900.990 kb on - strandat 1901.076 kb on + strandat 1901.085 kb on + strandat 1901.093 kb on - strandat 1901.123 kb on + strandat 1901.146 kb on - strandat 1901.146 kb on - strandat 1901.308 kb on - strand, within B158DRAFT_1802at 1901.442 kb on + strand, within B158DRAFT_1802at 1901.458 kb on - strand, within B158DRAFT_1802at 1901.532 kb on + strand, within B158DRAFT_1802at 1901.546 kb on + strand, within B158DRAFT_1802at 1901.621 kb on - strand, within B158DRAFT_1802at 1901.638 kb on + strand, within B158DRAFT_1802at 1901.646 kb on + strand, within B158DRAFT_1802at 1901.646 kb on + strand, within B158DRAFT_1802at 1901.646 kb on - strand, within B158DRAFT_1802at 1901.646 kb on - strand, within B158DRAFT_1802at 1901.654 kb on - strand, within B158DRAFT_1802at 1901.664 kb on - strand, within B158DRAFT_1802at 1901.689 kb on - strand, within B158DRAFT_1802at 1901.716 kb on + strand, within B158DRAFT_1802at 1901.716 kb on + strand, within B158DRAFT_1802at 1901.726 kb on - strand, within B158DRAFT_1802at 1901.728 kb on + strand, within B158DRAFT_1802at 1901.728 kb on + strand, within B158DRAFT_1802at 1901.728 kb on + strand, within B158DRAFT_1802at 1901.736 kb on - strand, within B158DRAFT_1802at 1901.736 kb on - strand, within B158DRAFT_1802at 1901.736 kb on - strand, within B158DRAFT_1802at 1901.736 kb on - strand, within B158DRAFT_1802at 1901.744 kb on + strand, within B158DRAFT_1802at 1901.744 kb on + strand, within B158DRAFT_1802at 1901.751 kb on - strand, within B158DRAFT_1802at 1901.863 kb on + strand, within B158DRAFT_1802at 1901.865 kb on - strand, within B158DRAFT_1802at 1901.876 kb on + strand, within B158DRAFT_1802at 1901.936 kb on + strand, within B158DRAFT_1802at 1901.941 kb on + strand, within B158DRAFT_1802at 1901.941 kb on + strand, within B158DRAFT_1802at 1901.941 kb on + strand, within B158DRAFT_1802at 1901.949 kb on - strand, within B158DRAFT_1802at 1901.999 kb on + strand, within B158DRAFT_1802

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 2.5 mM
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1,899,238 - B158DRAFT_1800 0.73 +0.1
1,899,252 + B158DRAFT_1800 0.73 -0.8
1,899,292 + B158DRAFT_1800 0.74 -0.9
1,899,300 - B158DRAFT_1800 0.74 -0.5
1,899,300 - B158DRAFT_1800 0.74 -0.1
1,899,302 + B158DRAFT_1800 0.74 +0.0
1,899,302 + B158DRAFT_1800 0.74 -1.4
1,899,302 + B158DRAFT_1800 0.74 -0.6
1,899,310 - B158DRAFT_1800 0.75 -1.2
1,899,310 - B158DRAFT_1800 0.75 -0.5
1,899,310 - B158DRAFT_1800 0.75 -0.3
1,899,336 + B158DRAFT_1800 0.75 -0.7
1,899,336 + B158DRAFT_1800 0.75 +0.1
1,899,336 + B158DRAFT_1800 0.75 -0.3
1,899,341 + B158DRAFT_1800 0.76 -0.6
1,899,344 - B158DRAFT_1800 0.76 -0.7
1,899,344 - B158DRAFT_1800 0.76 -0.9
1,899,349 - B158DRAFT_1800 0.76 -0.2
1,899,449 - B158DRAFT_1800 0.79 -0.2
1,899,473 + B158DRAFT_1800 0.79 -0.9
1,899,476 - B158DRAFT_1800 0.79 -0.3
1,899,549 - B158DRAFT_1800 0.82 -0.7
1,899,560 + B158DRAFT_1800 0.82 +0.1
1,899,568 - B158DRAFT_1800 0.82 -0.7
1,899,571 + B158DRAFT_1800 0.82 -0.5
1,899,578 - B158DRAFT_1800 0.82 -0.1
1,899,579 - B158DRAFT_1800 0.82 -0.2
1,899,579 - B158DRAFT_1800 0.82 -0.4
1,899,593 - B158DRAFT_1800 0.83 -0.3
1,899,628 - B158DRAFT_1800 0.84 +0.5
1,899,647 - B158DRAFT_1800 0.84 -0.9
1,899,647 - B158DRAFT_1800 0.84 -1.6
1,899,712 + B158DRAFT_1800 0.86 -0.3
1,899,782 - B158DRAFT_1800 0.88 -0.3
1,899,812 - B158DRAFT_1800 0.89 -1.0
1,899,830 - B158DRAFT_1800 0.90 -0.1
1,899,952 + -0.4
1,899,952 + +0.1
1,899,960 - -0.3
1,899,960 - +0.1
1,899,960 - +0.1
1,899,960 - -0.3
1,899,994 - -0.1
1,899,994 - -0.4
1,900,014 + +0.8
1,900,014 + -0.7
1,900,014 + -0.2
1,900,022 - -0.2
1,900,030 - -0.2
1,900,055 + -0.8
1,900,060 + +1.6
1,900,060 + -0.6
1,900,060 + -1.0
1,900,060 + -0.6
1,900,061 + -0.4
1,900,061 + -2.2
1,900,061 + -0.3
1,900,061 + -0.1
1,900,061 + -0.8
1,900,061 + -0.1
1,900,061 + -0.3
1,900,068 - -0.3
1,900,069 - -1.5
1,900,069 - +0.4
1,900,069 - -0.5
1,900,069 - -0.1
1,900,069 - -0.5
1,900,069 - +0.8
1,900,069 - +0.2
1,900,181 + -0.3
1,900,213 - -0.2
1,900,213 - -0.3
1,900,213 - +0.0
1,900,223 + -1.4
1,900,325 + B158DRAFT_1801 0.12 +1.4
1,900,398 + B158DRAFT_1801 0.22 -1.3
1,900,962 - -3.6
1,900,982 + -0.2
1,900,982 + -0.1
1,900,982 + -0.3
1,900,990 - -1.2
1,900,990 - -3.5
1,901,076 + -2.7
1,901,085 + -2.4
1,901,093 - -3.3
1,901,123 + -1.5
1,901,146 - -3.1
1,901,146 - -3.2
1,901,308 - B158DRAFT_1802 0.24 -1.9
1,901,442 + B158DRAFT_1802 0.36 -2.2
1,901,458 - B158DRAFT_1802 0.37 -2.9
1,901,532 + B158DRAFT_1802 0.43 -3.7
1,901,546 + B158DRAFT_1802 0.45 -2.9
1,901,621 - B158DRAFT_1802 0.51 -2.9
1,901,638 + B158DRAFT_1802 0.53 -2.3
1,901,646 + B158DRAFT_1802 0.53 -2.1
1,901,646 + B158DRAFT_1802 0.53 -2.2
1,901,646 - B158DRAFT_1802 0.53 -2.6
1,901,646 - B158DRAFT_1802 0.53 -3.5
1,901,654 - B158DRAFT_1802 0.54 -1.7
1,901,664 - B158DRAFT_1802 0.55 -3.4
1,901,689 - B158DRAFT_1802 0.57 -2.9
1,901,716 + B158DRAFT_1802 0.59 -1.8
1,901,716 + B158DRAFT_1802 0.59 -3.6
1,901,726 - B158DRAFT_1802 0.60 -3.5
1,901,728 + B158DRAFT_1802 0.61 -1.8
1,901,728 + B158DRAFT_1802 0.61 -2.6
1,901,728 + B158DRAFT_1802 0.61 -2.5
1,901,736 - B158DRAFT_1802 0.61 -3.5
1,901,736 - B158DRAFT_1802 0.61 -1.6
1,901,736 - B158DRAFT_1802 0.61 -2.3
1,901,736 - B158DRAFT_1802 0.61 -4.6
1,901,744 + B158DRAFT_1802 0.62 -3.2
1,901,744 + B158DRAFT_1802 0.62 -5.3
1,901,751 - B158DRAFT_1802 0.63 -2.6
1,901,863 + B158DRAFT_1802 0.72 -4.8
1,901,865 - B158DRAFT_1802 0.73 -3.3
1,901,876 + B158DRAFT_1802 0.73 -2.9
1,901,936 + B158DRAFT_1802 0.79 -2.3
1,901,941 + B158DRAFT_1802 0.79 -3.0
1,901,941 + B158DRAFT_1802 0.79 -1.5
1,901,941 + B158DRAFT_1802 0.79 -3.1
1,901,949 - B158DRAFT_1802 0.80 -2.2
1,901,999 + B158DRAFT_1802 0.84 -3.8

Or see this region's nucleotide sequence