Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1800 and B158DRAFT_1801 are separated by 53 nucleotides B158DRAFT_1801 and B158DRAFT_1802 are separated by 33 nucleotides
B158DRAFT_1800: B158DRAFT_1800 - transcription-repair coupling factor, at 1,896,756 to 1,900,178
_1800
B158DRAFT_1801: B158DRAFT_1801 - Protein of unknown function (DUF2803)., at 1,900,232 to 1,901,002
_1801
B158DRAFT_1802: B158DRAFT_1802 - Saccharopine dehydrogenase and related proteins, at 1,901,036 to 1,902,178
_1802
Position (kb)
1900
1901
1902 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1899.238 kb on - strand, within B158DRAFT_1800 at 1899.252 kb on + strand, within B158DRAFT_1800 at 1899.292 kb on + strand, within B158DRAFT_1800 at 1899.300 kb on - strand, within B158DRAFT_1800 at 1899.300 kb on - strand, within B158DRAFT_1800 at 1899.302 kb on + strand, within B158DRAFT_1800 at 1899.302 kb on + strand, within B158DRAFT_1800 at 1899.302 kb on + strand, within B158DRAFT_1800 at 1899.310 kb on - strand, within B158DRAFT_1800 at 1899.310 kb on - strand, within B158DRAFT_1800 at 1899.310 kb on - strand, within B158DRAFT_1800 at 1899.336 kb on + strand, within B158DRAFT_1800 at 1899.336 kb on + strand, within B158DRAFT_1800 at 1899.336 kb on + strand, within B158DRAFT_1800 at 1899.341 kb on + strand, within B158DRAFT_1800 at 1899.344 kb on - strand, within B158DRAFT_1800 at 1899.344 kb on - strand, within B158DRAFT_1800 at 1899.349 kb on - strand, within B158DRAFT_1800 at 1899.449 kb on - strand, within B158DRAFT_1800 at 1899.473 kb on + strand, within B158DRAFT_1800 at 1899.476 kb on - strand, within B158DRAFT_1800 at 1899.549 kb on - strand, within B158DRAFT_1800 at 1899.560 kb on + strand, within B158DRAFT_1800 at 1899.568 kb on - strand, within B158DRAFT_1800 at 1899.571 kb on + strand, within B158DRAFT_1800 at 1899.578 kb on - strand, within B158DRAFT_1800 at 1899.579 kb on - strand, within B158DRAFT_1800 at 1899.579 kb on - strand, within B158DRAFT_1800 at 1899.593 kb on - strand, within B158DRAFT_1800 at 1899.628 kb on - strand, within B158DRAFT_1800 at 1899.647 kb on - strand, within B158DRAFT_1800 at 1899.647 kb on - strand, within B158DRAFT_1800 at 1899.712 kb on + strand, within B158DRAFT_1800 at 1899.782 kb on - strand, within B158DRAFT_1800 at 1899.812 kb on - strand, within B158DRAFT_1800 at 1899.830 kb on - strand, within B158DRAFT_1800 at 1899.952 kb on + strand at 1899.952 kb on + strand at 1899.960 kb on - strand at 1899.960 kb on - strand at 1899.960 kb on - strand at 1899.960 kb on - strand at 1899.994 kb on - strand at 1899.994 kb on - strand at 1900.014 kb on + strand at 1900.014 kb on + strand at 1900.014 kb on + strand at 1900.022 kb on - strand at 1900.030 kb on - strand at 1900.055 kb on + strand at 1900.060 kb on + strand at 1900.060 kb on + strand at 1900.060 kb on + strand at 1900.060 kb on + strand at 1900.061 kb on + strand at 1900.061 kb on + strand at 1900.061 kb on + strand at 1900.061 kb on + strand at 1900.061 kb on + strand at 1900.061 kb on + strand at 1900.061 kb on + strand at 1900.068 kb on - strand at 1900.069 kb on - strand at 1900.069 kb on - strand at 1900.069 kb on - strand at 1900.069 kb on - strand at 1900.069 kb on - strand at 1900.069 kb on - strand at 1900.069 kb on - strand at 1900.181 kb on + strand at 1900.213 kb on - strand at 1900.213 kb on - strand at 1900.213 kb on - strand at 1900.223 kb on + strand at 1900.325 kb on + strand, within B158DRAFT_1801 at 1900.398 kb on + strand, within B158DRAFT_1801 at 1900.962 kb on - strand at 1900.982 kb on + strand at 1900.982 kb on + strand at 1900.982 kb on + strand at 1900.990 kb on - strand at 1900.990 kb on - strand at 1901.076 kb on + strand at 1901.085 kb on + strand at 1901.093 kb on - strand at 1901.123 kb on + strand at 1901.146 kb on - strand at 1901.146 kb on - strand at 1901.308 kb on - strand, within B158DRAFT_1802 at 1901.442 kb on + strand, within B158DRAFT_1802 at 1901.458 kb on - strand, within B158DRAFT_1802 at 1901.532 kb on + strand, within B158DRAFT_1802 at 1901.546 kb on + strand, within B158DRAFT_1802 at 1901.621 kb on - strand, within B158DRAFT_1802 at 1901.638 kb on + strand, within B158DRAFT_1802 at 1901.646 kb on + strand, within B158DRAFT_1802 at 1901.646 kb on + strand, within B158DRAFT_1802 at 1901.646 kb on - strand, within B158DRAFT_1802 at 1901.646 kb on - strand, within B158DRAFT_1802 at 1901.654 kb on - strand, within B158DRAFT_1802 at 1901.664 kb on - strand, within B158DRAFT_1802 at 1901.689 kb on - strand, within B158DRAFT_1802 at 1901.716 kb on + strand, within B158DRAFT_1802 at 1901.716 kb on + strand, within B158DRAFT_1802 at 1901.726 kb on - strand, within B158DRAFT_1802 at 1901.728 kb on + strand, within B158DRAFT_1802 at 1901.728 kb on + strand, within B158DRAFT_1802 at 1901.728 kb on + strand, within B158DRAFT_1802 at 1901.736 kb on - strand, within B158DRAFT_1802 at 1901.736 kb on - strand, within B158DRAFT_1802 at 1901.736 kb on - strand, within B158DRAFT_1802 at 1901.736 kb on - strand, within B158DRAFT_1802 at 1901.744 kb on + strand, within B158DRAFT_1802 at 1901.744 kb on + strand, within B158DRAFT_1802 at 1901.751 kb on - strand, within B158DRAFT_1802 at 1901.863 kb on + strand, within B158DRAFT_1802 at 1901.865 kb on - strand, within B158DRAFT_1802 at 1901.876 kb on + strand, within B158DRAFT_1802 at 1901.936 kb on + strand, within B158DRAFT_1802 at 1901.941 kb on + strand, within B158DRAFT_1802 at 1901.941 kb on + strand, within B158DRAFT_1802 at 1901.941 kb on + strand, within B158DRAFT_1802 at 1901.949 kb on - strand, within B158DRAFT_1802 at 1901.999 kb on + strand, within B158DRAFT_1802
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 2.5 mM remove 1,899,238 - B158DRAFT_1800 0.73 +0.1 1,899,252 + B158DRAFT_1800 0.73 -0.8 1,899,292 + B158DRAFT_1800 0.74 -0.9 1,899,300 - B158DRAFT_1800 0.74 -0.5 1,899,300 - B158DRAFT_1800 0.74 -0.1 1,899,302 + B158DRAFT_1800 0.74 +0.0 1,899,302 + B158DRAFT_1800 0.74 -1.4 1,899,302 + B158DRAFT_1800 0.74 -0.6 1,899,310 - B158DRAFT_1800 0.75 -1.2 1,899,310 - B158DRAFT_1800 0.75 -0.5 1,899,310 - B158DRAFT_1800 0.75 -0.3 1,899,336 + B158DRAFT_1800 0.75 -0.7 1,899,336 + B158DRAFT_1800 0.75 +0.1 1,899,336 + B158DRAFT_1800 0.75 -0.3 1,899,341 + B158DRAFT_1800 0.76 -0.6 1,899,344 - B158DRAFT_1800 0.76 -0.7 1,899,344 - B158DRAFT_1800 0.76 -0.9 1,899,349 - B158DRAFT_1800 0.76 -0.2 1,899,449 - B158DRAFT_1800 0.79 -0.2 1,899,473 + B158DRAFT_1800 0.79 -0.9 1,899,476 - B158DRAFT_1800 0.79 -0.3 1,899,549 - B158DRAFT_1800 0.82 -0.7 1,899,560 + B158DRAFT_1800 0.82 +0.1 1,899,568 - B158DRAFT_1800 0.82 -0.7 1,899,571 + B158DRAFT_1800 0.82 -0.5 1,899,578 - B158DRAFT_1800 0.82 -0.1 1,899,579 - B158DRAFT_1800 0.82 -0.2 1,899,579 - B158DRAFT_1800 0.82 -0.4 1,899,593 - B158DRAFT_1800 0.83 -0.3 1,899,628 - B158DRAFT_1800 0.84 +0.5 1,899,647 - B158DRAFT_1800 0.84 -0.9 1,899,647 - B158DRAFT_1800 0.84 -1.6 1,899,712 + B158DRAFT_1800 0.86 -0.3 1,899,782 - B158DRAFT_1800 0.88 -0.3 1,899,812 - B158DRAFT_1800 0.89 -1.0 1,899,830 - B158DRAFT_1800 0.90 -0.1 1,899,952 + -0.4 1,899,952 + +0.1 1,899,960 - -0.3 1,899,960 - +0.1 1,899,960 - +0.1 1,899,960 - -0.3 1,899,994 - -0.1 1,899,994 - -0.4 1,900,014 + +0.8 1,900,014 + -0.7 1,900,014 + -0.2 1,900,022 - -0.2 1,900,030 - -0.2 1,900,055 + -0.8 1,900,060 + +1.6 1,900,060 + -0.6 1,900,060 + -1.0 1,900,060 + -0.6 1,900,061 + -0.4 1,900,061 + -2.2 1,900,061 + -0.3 1,900,061 + -0.1 1,900,061 + -0.8 1,900,061 + -0.1 1,900,061 + -0.3 1,900,068 - -0.3 1,900,069 - -1.5 1,900,069 - +0.4 1,900,069 - -0.5 1,900,069 - -0.1 1,900,069 - -0.5 1,900,069 - +0.8 1,900,069 - +0.2 1,900,181 + -0.3 1,900,213 - -0.2 1,900,213 - -0.3 1,900,213 - +0.0 1,900,223 + -1.4 1,900,325 + B158DRAFT_1801 0.12 +1.4 1,900,398 + B158DRAFT_1801 0.22 -1.3 1,900,962 - -3.6 1,900,982 + -0.2 1,900,982 + -0.1 1,900,982 + -0.3 1,900,990 - -1.2 1,900,990 - -3.5 1,901,076 + -2.7 1,901,085 + -2.4 1,901,093 - -3.3 1,901,123 + -1.5 1,901,146 - -3.1 1,901,146 - -3.2 1,901,308 - B158DRAFT_1802 0.24 -1.9 1,901,442 + B158DRAFT_1802 0.36 -2.2 1,901,458 - B158DRAFT_1802 0.37 -2.9 1,901,532 + B158DRAFT_1802 0.43 -3.7 1,901,546 + B158DRAFT_1802 0.45 -2.9 1,901,621 - B158DRAFT_1802 0.51 -2.9 1,901,638 + B158DRAFT_1802 0.53 -2.3 1,901,646 + B158DRAFT_1802 0.53 -2.1 1,901,646 + B158DRAFT_1802 0.53 -2.2 1,901,646 - B158DRAFT_1802 0.53 -2.6 1,901,646 - B158DRAFT_1802 0.53 -3.5 1,901,654 - B158DRAFT_1802 0.54 -1.7 1,901,664 - B158DRAFT_1802 0.55 -3.4 1,901,689 - B158DRAFT_1802 0.57 -2.9 1,901,716 + B158DRAFT_1802 0.59 -1.8 1,901,716 + B158DRAFT_1802 0.59 -3.6 1,901,726 - B158DRAFT_1802 0.60 -3.5 1,901,728 + B158DRAFT_1802 0.61 -1.8 1,901,728 + B158DRAFT_1802 0.61 -2.6 1,901,728 + B158DRAFT_1802 0.61 -2.5 1,901,736 - B158DRAFT_1802 0.61 -3.5 1,901,736 - B158DRAFT_1802 0.61 -1.6 1,901,736 - B158DRAFT_1802 0.61 -2.3 1,901,736 - B158DRAFT_1802 0.61 -4.6 1,901,744 + B158DRAFT_1802 0.62 -3.2 1,901,744 + B158DRAFT_1802 0.62 -5.3 1,901,751 - B158DRAFT_1802 0.63 -2.6 1,901,863 + B158DRAFT_1802 0.72 -4.8 1,901,865 - B158DRAFT_1802 0.73 -3.3 1,901,876 + B158DRAFT_1802 0.73 -2.9 1,901,936 + B158DRAFT_1802 0.79 -2.3 1,901,941 + B158DRAFT_1802 0.79 -3.0 1,901,941 + B158DRAFT_1802 0.79 -1.5 1,901,941 + B158DRAFT_1802 0.79 -3.1 1,901,949 - B158DRAFT_1802 0.80 -2.2 1,901,999 + B158DRAFT_1802 0.84 -3.8
Or see this region's nucleotide sequence