Strain Fitness in Agrobacterium fabrum C58 around Atu5539

Experiment: L-Methionine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu5537 and Atu5538 overlap by 4 nucleotidesAtu5538 and Atu5539 are separated by 225 nucleotidesAtu5539 and Atu5540 overlap by 4 nucleotidesAtu5540 and Atu5541 overlap by 4 nucleotides Atu5537: Atu5537 - mercuric reductase, at 532,146 to 533,507 Atu5537 Atu5538: Atu5538 - hypothetical protein, at 533,504 to 533,965 Atu5538 Atu5539: Atu5539 - HlyD family secretion protein, at 534,191 to 535,066 Atu5539 Atu5540: Atu5540 - hypothetical protein, at 535,063 to 535,272 Atu5540 Atu5541: Atu5541 - hypothetical protein, at 535,269 to 537,218 Atu5541 Position (kb) 534 535 536Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 533.218 kb on - strand, within Atu5537at 533.241 kb on - strand, within Atu5537at 533.263 kb on + strand, within Atu5537at 533.287 kb on + strand, within Atu5537at 533.311 kb on + strand, within Atu5537at 533.343 kb on - strand, within Atu5537at 533.356 kb on - strand, within Atu5537at 533.373 kb on - strandat 533.474 kb on - strandat 533.491 kb on + strandat 533.509 kb on - strandat 533.583 kb on - strand, within Atu5538at 533.617 kb on - strand, within Atu5538at 533.628 kb on + strand, within Atu5538at 533.660 kb on - strand, within Atu5538at 533.678 kb on + strand, within Atu5538at 533.700 kb on + strand, within Atu5538at 533.701 kb on - strand, within Atu5538at 533.735 kb on + strand, within Atu5538at 533.831 kb on - strand, within Atu5538at 533.886 kb on + strand, within Atu5538at 533.910 kb on + strand, within Atu5538at 534.047 kb on + strandat 534.062 kb on - strandat 534.081 kb on + strandat 534.084 kb on - strandat 534.084 kb on - strandat 534.089 kb on - strandat 534.091 kb on + strandat 534.143 kb on + strandat 534.187 kb on - strandat 534.187 kb on - strandat 534.225 kb on - strandat 534.225 kb on - strandat 534.246 kb on - strandat 534.303 kb on - strand, within Atu5539at 534.308 kb on - strand, within Atu5539at 534.339 kb on + strand, within Atu5539at 534.422 kb on - strand, within Atu5539at 534.422 kb on - strand, within Atu5539at 534.426 kb on + strand, within Atu5539at 534.477 kb on - strand, within Atu5539at 534.551 kb on + strand, within Atu5539at 534.597 kb on + strand, within Atu5539at 534.615 kb on + strand, within Atu5539at 534.617 kb on - strand, within Atu5539at 534.640 kb on + strand, within Atu5539at 534.715 kb on + strand, within Atu5539at 534.715 kb on - strand, within Atu5539at 534.771 kb on + strand, within Atu5539at 534.773 kb on - strand, within Atu5539at 534.940 kb on + strand, within Atu5539at 534.940 kb on + strand, within Atu5539at 534.959 kb on + strand, within Atu5539at 534.992 kb on + strandat 535.008 kb on - strandat 535.109 kb on + strand, within Atu5540at 535.253 kb on + strandat 535.271 kb on + strandat 535.305 kb on - strandat 535.351 kb on - strandat 535.351 kb on - strandat 535.376 kb on + strandat 535.408 kb on - strandat 535.444 kb on - strandat 535.506 kb on + strand, within Atu5541at 535.506 kb on + strand, within Atu5541at 535.506 kb on + strand, within Atu5541at 535.514 kb on - strand, within Atu5541at 535.514 kb on - strand, within Atu5541at 535.514 kb on - strand, within Atu5541at 535.514 kb on - strand, within Atu5541at 535.516 kb on - strand, within Atu5541at 535.518 kb on + strand, within Atu5541at 535.536 kb on - strand, within Atu5541at 535.565 kb on - strand, within Atu5541at 535.565 kb on - strand, within Atu5541at 535.595 kb on - strand, within Atu5541at 535.619 kb on + strand, within Atu5541at 535.620 kb on - strand, within Atu5541at 535.669 kb on + strand, within Atu5541at 535.776 kb on - strand, within Atu5541at 535.776 kb on - strand, within Atu5541at 535.776 kb on - strand, within Atu5541at 535.795 kb on + strand, within Atu5541at 535.795 kb on + strand, within Atu5541at 535.803 kb on - strand, within Atu5541at 535.803 kb on - strand, within Atu5541at 535.803 kb on - strand, within Atu5541at 535.946 kb on - strand, within Atu5541at 535.946 kb on - strand, within Atu5541at 535.962 kb on - strand, within Atu5541at 535.964 kb on + strand, within Atu5541at 535.970 kb on + strand, within Atu5541

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
remove
533,218 - Atu5537 0.79 +0.1
533,241 - Atu5537 0.80 +0.3
533,263 + Atu5537 0.82 -0.1
533,287 + Atu5537 0.84 +0.8
533,311 + Atu5537 0.86 -0.5
533,343 - Atu5537 0.88 +1.4
533,356 - Atu5537 0.89 -0.4
533,373 - +0.6
533,474 - +0.9
533,491 + +0.1
533,509 - +0.3
533,583 - Atu5538 0.17 +1.2
533,617 - Atu5538 0.24 +1.8
533,628 + Atu5538 0.27 -0.1
533,660 - Atu5538 0.34 +0.0
533,678 + Atu5538 0.38 +0.4
533,700 + Atu5538 0.42 +1.6
533,701 - Atu5538 0.43 +2.7
533,735 + Atu5538 0.50 +1.4
533,831 - Atu5538 0.71 +0.5
533,886 + Atu5538 0.83 +0.0
533,910 + Atu5538 0.88 +0.1
534,047 + +1.2
534,062 - +0.2
534,081 + +0.6
534,084 - +0.5
534,084 - -2.3
534,089 - +0.9
534,091 + +0.1
534,143 + +0.7
534,187 - +2.0
534,187 - +1.2
534,225 - +0.7
534,225 - -0.8
534,246 - +2.8
534,303 - Atu5539 0.13 +0.8
534,308 - Atu5539 0.13 +0.2
534,339 + Atu5539 0.17 +0.5
534,422 - Atu5539 0.26 +4.0
534,422 - Atu5539 0.26 +1.4
534,426 + Atu5539 0.27 +1.0
534,477 - Atu5539 0.33 +2.7
534,551 + Atu5539 0.41 +1.7
534,597 + Atu5539 0.46 -0.3
534,615 + Atu5539 0.48 +1.4
534,617 - Atu5539 0.49 +0.2
534,640 + Atu5539 0.51 +1.7
534,715 + Atu5539 0.60 +0.7
534,715 - Atu5539 0.60 -0.1
534,771 + Atu5539 0.66 +1.2
534,773 - Atu5539 0.66 +1.5
534,940 + Atu5539 0.86 +0.4
534,940 + Atu5539 0.86 +0.8
534,959 + Atu5539 0.88 +1.7
534,992 + +3.4
535,008 - -0.5
535,109 + Atu5540 0.22 -1.3
535,253 + -0.1
535,271 + +0.7
535,305 - +2.2
535,351 - +0.3
535,351 - -0.2
535,376 + +1.2
535,408 - +0.7
535,444 - -0.1
535,506 + Atu5541 0.12 +0.7
535,506 + Atu5541 0.12 -0.9
535,506 + Atu5541 0.12 -0.4
535,514 - Atu5541 0.13 +0.8
535,514 - Atu5541 0.13 +1.7
535,514 - Atu5541 0.13 +2.1
535,514 - Atu5541 0.13 +1.0
535,516 - Atu5541 0.13 +0.3
535,518 + Atu5541 0.13 +0.9
535,536 - Atu5541 0.14 +0.6
535,565 - Atu5541 0.15 -0.3
535,565 - Atu5541 0.15 -0.4
535,595 - Atu5541 0.17 +1.0
535,619 + Atu5541 0.18 +0.4
535,620 - Atu5541 0.18 +0.5
535,669 + Atu5541 0.21 +1.0
535,776 - Atu5541 0.26 -1.2
535,776 - Atu5541 0.26 +0.8
535,776 - Atu5541 0.26 +0.6
535,795 + Atu5541 0.27 +0.6
535,795 + Atu5541 0.27 +2.1
535,803 - Atu5541 0.27 +0.2
535,803 - Atu5541 0.27 +0.8
535,803 - Atu5541 0.27 +0.8
535,946 - Atu5541 0.35 +0.9
535,946 - Atu5541 0.35 +0.0
535,962 - Atu5541 0.36 +0.5
535,964 + Atu5541 0.36 +2.1
535,970 + Atu5541 0.36 +1.8

Or see this region's nucleotide sequence