Strain Fitness in Agrobacterium fabrum C58 around Atu5414

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5412 and Atu5413 overlap by 8 nucleotidesAtu5413 and Atu5414 are separated by 31 nucleotidesAtu5414 and Atu5415 overlap by 32 nucleotides Atu5412: Atu5412 - ABC transporter membrane spanning protein, at 407,482 to 408,309 Atu5412 Atu5413: Atu5413 - ABC transporter membrane spanning protein, at 408,302 to 409,123 Atu5413 Atu5414: Atu5414 - Xaa-Pro dipeptidase, at 409,155 to 410,579 Atu5414 Atu5415: Atu5415 - hypothetical protein, at 410,548 to 411,255 Atu5415 Position (kb) 409 410 411Strain fitness (log2 ratio) -2 -1 0 1 2 3at 408.224 kb on + strand, within Atu5412at 408.232 kb on - strandat 408.232 kb on - strandat 408.232 kb on - strandat 408.340 kb on + strandat 408.369 kb on + strandat 408.369 kb on + strandat 408.374 kb on + strandat 408.377 kb on - strandat 408.377 kb on - strandat 408.377 kb on - strandat 408.377 kb on - strandat 408.429 kb on - strand, within Atu5413at 408.482 kb on - strand, within Atu5413at 408.489 kb on - strand, within Atu5413at 408.494 kb on + strand, within Atu5413at 408.579 kb on - strand, within Atu5413at 408.590 kb on + strand, within Atu5413at 408.598 kb on - strand, within Atu5413at 408.604 kb on - strand, within Atu5413at 408.630 kb on - strand, within Atu5413at 408.735 kb on - strand, within Atu5413at 408.747 kb on + strand, within Atu5413at 408.778 kb on - strand, within Atu5413at 408.778 kb on - strand, within Atu5413at 408.846 kb on - strand, within Atu5413at 408.846 kb on - strand, within Atu5413at 408.855 kb on + strand, within Atu5413at 408.858 kb on + strand, within Atu5413at 408.883 kb on - strand, within Atu5413at 408.973 kb on + strand, within Atu5413at 408.984 kb on - strand, within Atu5413at 409.145 kb on + strandat 409.172 kb on - strandat 409.174 kb on + strandat 409.280 kb on - strandat 409.289 kb on + strandat 409.357 kb on + strand, within Atu5414at 409.440 kb on - strand, within Atu5414at 409.441 kb on - strand, within Atu5414at 409.461 kb on - strand, within Atu5414at 409.461 kb on - strand, within Atu5414at 409.463 kb on + strand, within Atu5414at 409.516 kb on + strand, within Atu5414at 409.543 kb on - strand, within Atu5414at 409.598 kb on - strand, within Atu5414at 409.620 kb on + strand, within Atu5414at 409.638 kb on + strand, within Atu5414at 409.676 kb on - strand, within Atu5414at 409.677 kb on - strand, within Atu5414at 409.800 kb on - strand, within Atu5414at 409.806 kb on + strand, within Atu5414at 409.854 kb on + strand, within Atu5414at 409.854 kb on + strand, within Atu5414at 409.951 kb on - strand, within Atu5414at 409.989 kb on - strand, within Atu5414at 410.005 kb on + strand, within Atu5414at 410.009 kb on + strand, within Atu5414at 410.103 kb on - strand, within Atu5414at 410.174 kb on - strand, within Atu5414at 410.194 kb on + strand, within Atu5414at 410.201 kb on + strand, within Atu5414at 410.214 kb on + strand, within Atu5414at 410.217 kb on - strand, within Atu5414at 410.235 kb on + strand, within Atu5414at 410.250 kb on + strand, within Atu5414at 410.259 kb on - strand, within Atu5414at 410.300 kb on - strand, within Atu5414at 410.339 kb on + strand, within Atu5414at 410.344 kb on + strand, within Atu5414at 410.344 kb on + strand, within Atu5414at 410.352 kb on - strand, within Atu5414at 410.420 kb on + strand, within Atu5414at 410.429 kb on + strand, within Atu5414at 410.458 kb on + strandat 410.495 kb on + strandat 410.678 kb on + strand, within Atu5415at 410.686 kb on + strand, within Atu5415at 410.694 kb on - strand, within Atu5415at 410.696 kb on - strand, within Atu5415at 410.715 kb on + strand, within Atu5415at 410.715 kb on + strand, within Atu5415at 410.728 kb on - strand, within Atu5415at 410.787 kb on + strand, within Atu5415at 410.859 kb on - strand, within Atu5415at 410.889 kb on - strand, within Atu5415at 410.955 kb on + strand, within Atu5415at 410.963 kb on - strand, within Atu5415at 410.963 kb on - strand, within Atu5415at 411.035 kb on + strand, within Atu5415at 411.047 kb on + strand, within Atu5415at 411.168 kb on - strand, within Atu5415at 411.169 kb on - strand, within Atu5415at 411.191 kb on - strandat 411.205 kb on + strandat 411.250 kb on + strandat 411.250 kb on + strandat 411.350 kb on - strandat 411.352 kb on + strandat 411.375 kb on + strandat 411.448 kb on - strandat 411.484 kb on + strandat 411.498 kb on + strandat 411.520 kb on + strandat 411.521 kb on - strandat 411.525 kb on + strandat 411.525 kb on + strandat 411.573 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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408,224 + Atu5412 0.90 -0.2
408,232 - +0.7
408,232 - +0.6
408,232 - +2.6
408,340 + -0.7
408,369 + -0.1
408,369 + -0.3
408,374 + -0.4
408,377 - +0.1
408,377 - +0.2
408,377 - +0.7
408,377 - -0.7
408,429 - Atu5413 0.15 +0.2
408,482 - Atu5413 0.22 +2.3
408,489 - Atu5413 0.23 +0.9
408,494 + Atu5413 0.23 -0.9
408,579 - Atu5413 0.34 -0.5
408,590 + Atu5413 0.35 +0.1
408,598 - Atu5413 0.36 +0.3
408,604 - Atu5413 0.37 +1.4
408,630 - Atu5413 0.40 +0.7
408,735 - Atu5413 0.53 +1.0
408,747 + Atu5413 0.54 +0.0
408,778 - Atu5413 0.58 -0.3
408,778 - Atu5413 0.58 +0.0
408,846 - Atu5413 0.66 +0.4
408,846 - Atu5413 0.66 -0.3
408,855 + Atu5413 0.67 +1.7
408,858 + Atu5413 0.68 +0.0
408,883 - Atu5413 0.71 -0.5
408,973 + Atu5413 0.82 +2.1
408,984 - Atu5413 0.83 +2.1
409,145 + +0.8
409,172 - +1.2
409,174 + -2.1
409,280 - +0.9
409,289 + +1.6
409,357 + Atu5414 0.14 +0.2
409,440 - Atu5414 0.20 +1.1
409,441 - Atu5414 0.20 +0.1
409,461 - Atu5414 0.21 +0.7
409,461 - Atu5414 0.21 +0.5
409,463 + Atu5414 0.22 +0.3
409,516 + Atu5414 0.25 -0.1
409,543 - Atu5414 0.27 +1.8
409,598 - Atu5414 0.31 +3.3
409,620 + Atu5414 0.33 +0.4
409,638 + Atu5414 0.34 +1.7
409,676 - Atu5414 0.37 +2.3
409,677 - Atu5414 0.37 +0.4
409,800 - Atu5414 0.45 +2.0
409,806 + Atu5414 0.46 +0.1
409,854 + Atu5414 0.49 +0.7
409,854 + Atu5414 0.49 -1.9
409,951 - Atu5414 0.56 +2.1
409,989 - Atu5414 0.59 +1.3
410,005 + Atu5414 0.60 -0.0
410,009 + Atu5414 0.60 +0.8
410,103 - Atu5414 0.67 -0.1
410,174 - Atu5414 0.72 -0.3
410,194 + Atu5414 0.73 +0.9
410,201 + Atu5414 0.73 +0.9
410,214 + Atu5414 0.74 +0.3
410,217 - Atu5414 0.75 +0.4
410,235 + Atu5414 0.76 +1.8
410,250 + Atu5414 0.77 +0.2
410,259 - Atu5414 0.77 +1.1
410,300 - Atu5414 0.80 -0.6
410,339 + Atu5414 0.83 +0.2
410,344 + Atu5414 0.83 -0.4
410,344 + Atu5414 0.83 +2.4
410,352 - Atu5414 0.84 +2.3
410,420 + Atu5414 0.89 +1.7
410,429 + Atu5414 0.89 +1.5
410,458 + +1.9
410,495 + -1.3
410,678 + Atu5415 0.18 +1.3
410,686 + Atu5415 0.19 +1.6
410,694 - Atu5415 0.21 +0.3
410,696 - Atu5415 0.21 +2.3
410,715 + Atu5415 0.24 +0.9
410,715 + Atu5415 0.24 +2.4
410,728 - Atu5415 0.25 +1.1
410,787 + Atu5415 0.34 +0.3
410,859 - Atu5415 0.44 -1.6
410,889 - Atu5415 0.48 -1.8
410,955 + Atu5415 0.57 -0.7
410,963 - Atu5415 0.59 -0.2
410,963 - Atu5415 0.59 +0.5
411,035 + Atu5415 0.69 +0.4
411,047 + Atu5415 0.70 +0.2
411,168 - Atu5415 0.88 +1.0
411,169 - Atu5415 0.88 -0.2
411,191 - -1.0
411,205 + +1.2
411,250 + -0.2
411,250 + +0.1
411,350 - +0.7
411,352 + -0.4
411,375 + +1.7
411,448 - +0.8
411,484 + +1.0
411,498 + +0.1
411,520 + +0.3
411,521 - -0.0
411,525 + +0.4
411,525 + -0.5
411,573 + +1.3

Or see this region's nucleotide sequence