Strain Fitness in Agrobacterium fabrum C58 around Atu1825

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1824 and Atu1825 are separated by 198 nucleotidesAtu1825 and Atu1826 are separated by 211 nucleotides Atu1824: Atu1824 - ABC transporter subunit, at 1,803,109 to 1,804,578 Atu1824 Atu1825: Atu1825 - cysteine desulfurase, at 1,804,777 to 1,805,946 Atu1825 Atu1826: Atu1826 - hypothetical protein, at 1,806,158 to 1,806,835 Atu1826 Position (kb) 1804 1805 1806Strain fitness (log2 ratio) -1 0 1at 1804.700 kb on - strandat 1804.700 kb on - strandat 1806.887 kb on - strandat 1806.938 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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1,804,700 - +0.1
1,804,700 - -0.3
1,806,887 - -0.1
1,806,938 - -0.9

Or see this region's nucleotide sequence