Experiment: Ferulic Acid (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00723 and PFR28_00724 are separated by 164 nucleotides PFR28_00724 and PFR28_00725 are separated by 33 nucleotides PFR28_00725 and PFR28_00726 are separated by 12 nucleotides
PFR28_00723: PFR28_00723 - Dipeptidyl aminopeptidase BI, at 761,309 to 763,363
_00723
PFR28_00724: PFR28_00724 - hypothetical protein, at 763,528 to 764,016
_00724
PFR28_00725: PFR28_00725 - Putative glutamine amidotransferase YafJ, at 764,050 to 764,826
_00725
PFR28_00726: PFR28_00726 - hypothetical protein, at 764,839 to 765,381
_00726
Position (kb) 763
764
765 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 762.903 kb on + strand, within PFR28_00723 at 762.903 kb on + strand, within PFR28_00723 at 762.903 kb on + strand, within PFR28_00723 at 762.903 kb on + strand, within PFR28_00723 at 762.903 kb on + strand, within PFR28_00723 at 762.903 kb on + strand, within PFR28_00723 at 762.903 kb on + strand, within PFR28_00723 at 762.903 kb on + strand, within PFR28_00723 at 762.904 kb on - strand, within PFR28_00723 at 762.904 kb on - strand, within PFR28_00723 at 762.904 kb on - strand, within PFR28_00723 at 762.904 kb on - strand, within PFR28_00723 at 762.904 kb on - strand, within PFR28_00723 at 762.933 kb on + strand, within PFR28_00723 at 762.962 kb on - strand, within PFR28_00723 at 763.089 kb on + strand, within PFR28_00723 at 763.116 kb on + strand, within PFR28_00723 at 763.116 kb on + strand, within PFR28_00723 at 763.117 kb on - strand, within PFR28_00723 at 763.117 kb on - strand, within PFR28_00723 at 763.117 kb on - strand, within PFR28_00723 at 763.117 kb on - strand, within PFR28_00723 at 763.117 kb on - strand, within PFR28_00723 at 763.117 kb on - strand, within PFR28_00723 at 763.117 kb on - strand, within PFR28_00723 at 763.117 kb on - strand, within PFR28_00723 at 763.117 kb on - strand, within PFR28_00723 at 763.117 kb on - strand, within PFR28_00723 at 763.119 kb on + strand, within PFR28_00723 at 763.119 kb on + strand, within PFR28_00723 at 763.119 kb on + strand, within PFR28_00723 at 763.119 kb on + strand, within PFR28_00723 at 763.120 kb on - strand, within PFR28_00723 at 763.120 kb on - strand, within PFR28_00723 at 763.120 kb on - strand, within PFR28_00723 at 763.120 kb on - strand, within PFR28_00723 at 763.125 kb on + strand, within PFR28_00723 at 763.125 kb on + strand, within PFR28_00723 at 763.125 kb on + strand, within PFR28_00723 at 763.125 kb on + strand, within PFR28_00723 at 763.125 kb on + strand, within PFR28_00723 at 763.126 kb on - strand, within PFR28_00723 at 763.126 kb on - strand, within PFR28_00723 at 763.126 kb on - strand, within PFR28_00723 at 763.126 kb on - strand, within PFR28_00723 at 763.126 kb on - strand, within PFR28_00723 at 763.236 kb on + strand at 763.257 kb on + strand at 763.299 kb on + strand at 763.299 kb on + strand at 763.356 kb on - strand at 763.356 kb on - strand at 763.383 kb on + strand at 763.383 kb on + strand at 763.384 kb on - strand at 763.412 kb on + strand at 763.412 kb on + strand at 763.412 kb on + strand at 763.413 kb on - strand at 763.413 kb on - strand at 763.413 kb on - strand at 763.413 kb on - strand at 763.413 kb on - strand at 763.490 kb on - strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.492 kb on + strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.493 kb on - strand at 763.494 kb on + strand at 763.494 kb on + strand at 763.494 kb on + strand at 763.494 kb on + strand at 763.494 kb on + strand at 763.494 kb on + strand at 763.494 kb on + strand at 763.495 kb on - strand at 763.495 kb on - strand at 763.495 kb on - strand at 763.495 kb on - strand at 763.495 kb on - strand at 763.495 kb on - strand at 763.495 kb on - strand at 763.502 kb on + strand at 763.502 kb on + strand at 763.502 kb on + strand at 763.503 kb on - strand at 763.503 kb on - strand at 763.503 kb on - strand at 763.503 kb on - strand at 763.543 kb on + strand at 763.544 kb on - strand at 763.544 kb on - strand at 763.544 kb on - strand at 763.562 kb on + strand at 763.562 kb on + strand at 763.563 kb on - strand at 763.564 kb on + strand at 763.564 kb on + strand at 763.564 kb on + strand at 763.564 kb on + strand at 763.565 kb on - strand at 763.565 kb on - strand at 763.565 kb on - strand at 763.565 kb on - strand at 763.595 kb on + strand, within PFR28_00724 at 763.595 kb on + strand, within PFR28_00724 at 763.596 kb on - strand, within PFR28_00724 at 763.792 kb on + strand, within PFR28_00724 at 763.792 kb on + strand, within PFR28_00724 at 763.793 kb on - strand, within PFR28_00724 at 763.793 kb on - strand, within PFR28_00724 at 763.793 kb on - strand, within PFR28_00724 at 763.793 kb on - strand, within PFR28_00724 at 763.793 kb on - strand, within PFR28_00724 at 763.793 kb on - strand, within PFR28_00724 at 763.793 kb on - strand, within PFR28_00724 at 763.793 kb on - strand, within PFR28_00724 at 763.793 kb on - strand, within PFR28_00724 at 763.793 kb on - strand, within PFR28_00724 at 763.816 kb on + strand, within PFR28_00724 at 763.817 kb on - strand, within PFR28_00724 at 763.830 kb on - strand, within PFR28_00724 at 764.060 kb on + strand at 764.060 kb on + strand at 764.060 kb on + strand at 764.061 kb on - strand at 764.170 kb on + strand, within PFR28_00725 at 764.170 kb on + strand, within PFR28_00725 at 764.170 kb on + strand, within PFR28_00725 at 764.170 kb on + strand, within PFR28_00725 at 764.171 kb on - strand, within PFR28_00725 at 764.596 kb on + strand, within PFR28_00725 at 764.596 kb on + strand, within PFR28_00725 at 764.596 kb on + strand, within PFR28_00725 at 764.824 kb on + strand at 764.825 kb on - strand at 764.825 kb on - strand at 764.838 kb on + strand at 764.838 kb on + strand at 764.838 kb on + strand at 764.838 kb on + strand at 764.839 kb on - strand at 764.839 kb on - strand at 764.839 kb on - strand at 764.839 kb on - strand at 764.851 kb on + strand at 764.851 kb on + strand at 764.851 kb on + strand at 764.851 kb on + strand at 764.852 kb on - strand at 764.852 kb on - strand at 764.852 kb on - strand at 764.852 kb on - strand at 764.852 kb on - strand at 764.852 kb on - strand at 764.852 kb on - strand at 764.852 kb on - strand at 764.855 kb on + strand at 764.855 kb on + strand at 764.855 kb on + strand at 764.855 kb on + strand at 764.856 kb on - strand at 764.856 kb on - strand at 764.856 kb on - strand at 764.856 kb on - strand at 764.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid (C) 2.5 mM remove 762,903 + PFR28_00723 0.78 +0.2 762,903 + PFR28_00723 0.78 -0.1 762,903 + PFR28_00723 0.78 +1.6 762,903 + PFR28_00723 0.78 +0.4 762,903 + PFR28_00723 0.78 +0.2 762,903 + PFR28_00723 0.78 +0.2 762,903 + PFR28_00723 0.78 -0.5 762,903 + PFR28_00723 0.78 +1.5 762,904 - PFR28_00723 0.78 -0.5 762,904 - PFR28_00723 0.78 -0.5 762,904 - PFR28_00723 0.78 +0.4 762,904 - PFR28_00723 0.78 -2.5 762,904 - PFR28_00723 0.78 +2.2 762,933 + PFR28_00723 0.79 -0.4 762,962 - PFR28_00723 0.80 -0.2 763,089 + PFR28_00723 0.87 +0.5 763,116 + PFR28_00723 0.88 +0.2 763,116 + PFR28_00723 0.88 +0.3 763,117 - PFR28_00723 0.88 -0.5 763,117 - PFR28_00723 0.88 +1.1 763,117 - PFR28_00723 0.88 -0.2 763,117 - PFR28_00723 0.88 +0.7 763,117 - PFR28_00723 0.88 +0.5 763,117 - PFR28_00723 0.88 -0.5 763,117 - PFR28_00723 0.88 +0.2 763,117 - PFR28_00723 0.88 -0.4 763,117 - PFR28_00723 0.88 +0.0 763,117 - PFR28_00723 0.88 +1.1 763,119 + PFR28_00723 0.88 +0.7 763,119 + PFR28_00723 0.88 -0.7 763,119 + PFR28_00723 0.88 +0.5 763,119 + PFR28_00723 0.88 -0.2 763,120 - PFR28_00723 0.88 -1.5 763,120 - PFR28_00723 0.88 +0.2 763,120 - PFR28_00723 0.88 -1.1 763,120 - PFR28_00723 0.88 -0.4 763,125 + PFR28_00723 0.88 -0.1 763,125 + PFR28_00723 0.88 -0.5 763,125 + PFR28_00723 0.88 +0.0 763,125 + PFR28_00723 0.88 +0.7 763,125 + PFR28_00723 0.88 -0.4 763,126 - PFR28_00723 0.88 -0.2 763,126 - PFR28_00723 0.88 +2.8 763,126 - PFR28_00723 0.88 -0.4 763,126 - PFR28_00723 0.88 -0.6 763,126 - PFR28_00723 0.88 -0.4 763,236 + -1.6 763,257 + +0.8 763,299 + +0.5 763,299 + -1.5 763,356 - +0.1 763,356 - -0.0 763,383 + -0.8 763,383 + +0.0 763,384 - -0.8 763,412 + +0.0 763,412 + -0.4 763,412 + -0.2 763,413 - -0.1 763,413 - +0.4 763,413 - +0.8 763,413 - -1.1 763,413 - +1.2 763,490 - +0.1 763,492 + +1.2 763,492 + +0.0 763,492 + -0.2 763,492 + +0.8 763,492 + -0.6 763,492 + +0.3 763,492 + +0.9 763,492 + +0.1 763,492 + +0.6 763,492 + +0.3 763,492 + +1.6 763,492 + +0.8 763,492 + -1.0 763,492 + -1.3 763,492 + -0.5 763,492 + -0.4 763,492 + -0.4 763,493 - -0.4 763,493 - -0.4 763,493 - -0.6 763,493 - +0.5 763,493 - -0.5 763,493 - -1.1 763,493 - +1.1 763,493 - -0.3 763,493 - -0.0 763,493 - -0.6 763,493 - -0.2 763,493 - -0.0 763,493 - -0.3 763,493 - +0.0 763,494 + -0.6 763,494 + -0.4 763,494 + -0.9 763,494 + -1.6 763,494 + -0.7 763,494 + +0.6 763,494 + -1.3 763,495 - +1.0 763,495 - -0.6 763,495 - -0.4 763,495 - +0.1 763,495 - -0.3 763,495 - -0.4 763,495 - +0.4 763,502 + +0.0 763,502 + +0.2 763,502 + +0.1 763,503 - +0.3 763,503 - -0.6 763,503 - -0.2 763,503 - -0.3 763,543 + -2.4 763,544 - +0.1 763,544 - -0.4 763,544 - +0.1 763,562 + +0.1 763,562 + -0.2 763,563 - -0.8 763,564 + -0.3 763,564 + -0.0 763,564 + -0.6 763,564 + -1.8 763,565 - +0.2 763,565 - -0.2 763,565 - -0.2 763,565 - -0.7 763,595 + PFR28_00724 0.14 +1.1 763,595 + PFR28_00724 0.14 -0.0 763,596 - PFR28_00724 0.14 +1.2 763,792 + PFR28_00724 0.54 +0.8 763,792 + PFR28_00724 0.54 -0.2 763,793 - PFR28_00724 0.54 -1.0 763,793 - PFR28_00724 0.54 -2.1 763,793 - PFR28_00724 0.54 +0.0 763,793 - PFR28_00724 0.54 +0.6 763,793 - PFR28_00724 0.54 -0.8 763,793 - PFR28_00724 0.54 +0.1 763,793 - PFR28_00724 0.54 -0.3 763,793 - PFR28_00724 0.54 +1.1 763,793 - PFR28_00724 0.54 -0.9 763,793 - PFR28_00724 0.54 -0.2 763,816 + PFR28_00724 0.59 +0.6 763,817 - PFR28_00724 0.59 +0.2 763,830 - PFR28_00724 0.62 -0.2 764,060 + +0.4 764,060 + -0.3 764,060 + +0.5 764,061 - +0.3 764,170 + PFR28_00725 0.15 -0.6 764,170 + PFR28_00725 0.15 +0.5 764,170 + PFR28_00725 0.15 +0.8 764,170 + PFR28_00725 0.15 -0.9 764,171 - PFR28_00725 0.16 +0.2 764,596 + PFR28_00725 0.70 +0.4 764,596 + PFR28_00725 0.70 +0.2 764,596 + PFR28_00725 0.70 -2.4 764,824 + +1.0 764,825 - -0.6 764,825 - +0.0 764,838 + -0.8 764,838 + +1.3 764,838 + -1.8 764,838 + +0.2 764,839 - +1.0 764,839 - -0.6 764,839 - -0.3 764,839 - -0.8 764,851 + +0.8 764,851 + -0.2 764,851 + +0.3 764,851 + +1.0 764,852 - +0.7 764,852 - -0.4 764,852 - +0.8 764,852 - +0.0 764,852 - -0.4 764,852 - +1.6 764,852 - +0.7 764,852 - +0.2 764,855 + +0.4 764,855 + -1.1 764,855 + +0.6 764,855 + -0.3 764,856 - +1.3 764,856 - -0.7 764,856 - -0.2 764,856 - -0.6 764,856 - -0.4
Or see this region's nucleotide sequence