Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF792

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF792 and GFF793 are separated by 400 nucleotides GFF792 - hypothetical protein, at 142,744 to 142,857 GFF792 GFF793 - hypothetical protein, at 143,258 to 143,371 GFF793 Position (kb) 142 143Strain fitness (log2 ratio) -2 -1 0 1 2at 141.783 kb on - strandat 141.783 kb on - strandat 141.783 kb on - strandat 141.817 kb on + strandat 141.913 kb on + strandat 141.926 kb on + strandat 142.027 kb on - strandat 142.029 kb on - strandat 142.037 kb on - strandat 142.037 kb on - strandat 142.098 kb on + strandat 142.231 kb on - strandat 142.243 kb on + strandat 142.244 kb on - strandat 142.350 kb on - strandat 142.351 kb on + strandat 142.351 kb on + strandat 142.351 kb on + strandat 142.382 kb on + strandat 142.426 kb on - strandat 142.483 kb on - strandat 142.543 kb on + strandat 142.544 kb on - strandat 142.647 kb on + strandat 142.712 kb on + strandat 142.825 kb on - strand, within GFF792at 143.281 kb on - strand, within GFF793at 143.431 kb on - strandat 143.481 kb on - strandat 143.518 kb on + strandat 143.518 kb on + strandat 143.519 kb on - strandat 143.589 kb on + strandat 143.631 kb on - strandat 143.683 kb on + strandat 143.691 kb on + strandat 143.793 kb on + strandat 143.806 kb on - strandat 143.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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141,783 - +0.4
141,783 - -2.0
141,783 - +0.9
141,817 + -0.5
141,913 + -0.2
141,926 + -0.7
142,027 - +0.3
142,029 - -0.2
142,037 - +0.4
142,037 - -0.3
142,098 + +0.7
142,231 - +0.8
142,243 + -1.2
142,244 - +0.2
142,350 - +0.0
142,351 + -0.9
142,351 + -0.0
142,351 + -0.7
142,382 + -1.1
142,426 - -0.1
142,483 - -0.8
142,543 + +0.8
142,544 - +0.1
142,647 + +1.4
142,712 + +0.2
142,825 - GFF792 0.71 -1.3
143,281 - GFF793 0.20 +2.0
143,431 - +0.7
143,481 - +0.4
143,518 + -0.6
143,518 + +0.0
143,519 - -0.4
143,589 + -0.6
143,631 - +0.7
143,683 + -0.5
143,691 + -0.4
143,793 + +0.3
143,806 - +0.3
143,814 - +0.7

Or see this region's nucleotide sequence