Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF699 and GFF700 overlap by 32 nucleotides GFF700 and GFF701 are separated by 202 nucleotides GFF701 and GFF702 are separated by 204 nucleotides GFF702 and GFF703 overlap by 4 nucleotides
GFF699 - probable exported protein YPO2521, at 57,526 to 57,786
GFF699
GFF700 - hypothetical protein, at 57,755 to 57,868
GFF700
GFF701 - Hypothetical Zinc-finger containing protein, at 58,071 to 58,337
GFF701
GFF702 - Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51), at 58,542 to 59,468
GFF702
GFF703 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 59,465 to 61,687
GFF703
Position (kb) 58
59
60 Strain fitness (log2 ratio) -1
0
1 at 57.587 kb on + strand, within GFF699 at 57.588 kb on - strand, within GFF699 at 57.771 kb on - strand at 58.047 kb on - strand at 58.156 kb on - strand, within GFF701 at 58.355 kb on - strand at 58.359 kb on + strand at 58.485 kb on - strand at 58.485 kb on - strand at 58.487 kb on - strand at 58.491 kb on - strand at 58.710 kb on - strand, within GFF702 at 58.797 kb on + strand, within GFF702 at 58.797 kb on + strand, within GFF702 at 58.799 kb on + strand, within GFF702 at 58.800 kb on - strand, within GFF702 at 58.893 kb on + strand, within GFF702 at 58.917 kb on + strand, within GFF702 at 59.064 kb on - strand, within GFF702 at 59.210 kb on - strand, within GFF702 at 59.423 kb on + strand at 59.451 kb on - strand at 59.535 kb on + strand at 59.561 kb on - strand at 59.591 kb on - strand at 59.669 kb on + strand at 59.802 kb on + strand, within GFF703 at 59.872 kb on + strand, within GFF703 at 59.872 kb on + strand, within GFF703 at 59.948 kb on + strand, within GFF703 at 60.044 kb on - strand, within GFF703 at 60.330 kb on - strand, within GFF703
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI remove 57,587 + GFF699 0.23 -0.1 57,588 - GFF699 0.24 +0.6 57,771 - +0.3 58,047 - +0.4 58,156 - GFF701 0.32 +0.8 58,355 - +1.1 58,359 + +0.8 58,485 - +0.4 58,485 - +1.0 58,487 - -0.1 58,491 - -1.2 58,710 - GFF702 0.18 -0.5 58,797 + GFF702 0.28 +0.6 58,797 + GFF702 0.28 +0.9 58,799 + GFF702 0.28 +0.5 58,800 - GFF702 0.28 -0.1 58,893 + GFF702 0.38 +1.0 58,917 + GFF702 0.40 +0.1 59,064 - GFF702 0.56 -0.0 59,210 - GFF702 0.72 +0.1 59,423 + -0.3 59,451 - +0.0 59,535 + +0.0 59,561 - +0.6 59,591 - +0.4 59,669 + -0.3 59,802 + GFF703 0.15 -0.2 59,872 + GFF703 0.18 -0.1 59,872 + GFF703 0.18 +0.4 59,948 + GFF703 0.22 +1.1 60,044 - GFF703 0.26 +0.1 60,330 - GFF703 0.39 +0.3
Or see this region's nucleotide sequence