Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF575

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF574 and GFF575 are separated by 346 nucleotidesGFF575 and GFF576 overlap by 4 nucleotides GFF574 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 303,344 to 304,450 GFF574 GFF575 - 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18), at 304,797 to 306,983 GFF575 GFF576 - Glycogen debranching enzyme (EC 3.2.1.-), at 306,980 to 308,956 GFF576 Position (kb) 304 305 306 307Strain fitness (log2 ratio) -2 -1 0 1 2at 304.490 kb on + strandat 304.645 kb on + strandat 304.645 kb on + strandat 304.645 kb on + strandat 304.662 kb on + strandat 304.672 kb on - strandat 304.682 kb on + strandat 304.696 kb on + strandat 304.696 kb on + strandat 304.826 kb on + strandat 304.827 kb on - strandat 304.898 kb on - strandat 304.961 kb on + strandat 304.962 kb on - strandat 305.111 kb on - strand, within GFF575at 305.316 kb on - strand, within GFF575at 305.316 kb on - strand, within GFF575at 305.400 kb on - strand, within GFF575at 305.532 kb on + strand, within GFF575at 305.532 kb on + strand, within GFF575at 305.546 kb on - strand, within GFF575at 305.546 kb on - strand, within GFF575at 305.564 kb on + strand, within GFF575at 305.919 kb on + strand, within GFF575at 305.919 kb on + strand, within GFF575at 305.920 kb on - strand, within GFF575at 305.925 kb on + strand, within GFF575at 305.926 kb on - strand, within GFF575at 305.926 kb on - strand, within GFF575at 305.971 kb on - strand, within GFF575at 306.023 kb on + strand, within GFF575at 306.030 kb on + strand, within GFF575at 306.119 kb on + strand, within GFF575at 306.231 kb on + strand, within GFF575at 306.333 kb on + strand, within GFF575at 306.454 kb on - strand, within GFF575at 306.454 kb on - strand, within GFF575at 306.455 kb on + strand, within GFF575at 306.456 kb on + strand, within GFF575at 306.457 kb on - strand, within GFF575at 306.624 kb on + strand, within GFF575at 306.635 kb on + strand, within GFF575at 306.636 kb on - strand, within GFF575at 306.636 kb on - strand, within GFF575at 306.767 kb on + strandat 306.929 kb on + strandat 307.025 kb on + strandat 307.026 kb on - strandat 307.026 kb on - strandat 307.026 kb on - strandat 307.077 kb on + strandat 307.077 kb on + strandat 307.290 kb on + strand, within GFF576at 307.385 kb on + strand, within GFF576at 307.386 kb on - strand, within GFF576at 307.440 kb on - strand, within GFF576at 307.466 kb on + strand, within GFF576at 307.494 kb on + strand, within GFF576at 307.505 kb on + strand, within GFF576at 307.505 kb on + strand, within GFF576at 307.642 kb on + strand, within GFF576at 307.642 kb on + strand, within GFF576at 307.643 kb on - strand, within GFF576at 307.768 kb on - strand, within GFF576at 307.770 kb on + strand, within GFF576at 307.834 kb on + strand, within GFF576at 307.838 kb on + strand, within GFF576at 307.838 kb on + strand, within GFF576at 307.838 kb on + strand, within GFF576at 307.839 kb on - strand, within GFF576at 307.839 kb on - strand, within GFF576at 307.839 kb on - strand, within GFF576at 307.841 kb on + strand, within GFF576

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
remove
304,490 + +0.6
304,645 + -1.7
304,645 + +0.1
304,645 + +0.1
304,662 + -2.2
304,672 - -0.6
304,682 + -0.1
304,696 + +0.3
304,696 + -0.4
304,826 + -0.1
304,827 - +0.5
304,898 - +0.3
304,961 + -0.1
304,962 - +0.6
305,111 - GFF575 0.14 +0.3
305,316 - GFF575 0.24 +0.8
305,316 - GFF575 0.24 -0.0
305,400 - GFF575 0.28 -0.5
305,532 + GFF575 0.34 -0.7
305,532 + GFF575 0.34 -1.0
305,546 - GFF575 0.34 -0.4
305,546 - GFF575 0.34 -0.7
305,564 + GFF575 0.35 +0.3
305,919 + GFF575 0.51 -0.2
305,919 + GFF575 0.51 +0.6
305,920 - GFF575 0.51 +0.4
305,925 + GFF575 0.52 +0.6
305,926 - GFF575 0.52 +0.5
305,926 - GFF575 0.52 +0.4
305,971 - GFF575 0.54 +0.2
306,023 + GFF575 0.56 +1.0
306,030 + GFF575 0.56 -0.4
306,119 + GFF575 0.60 +0.5
306,231 + GFF575 0.66 +2.1
306,333 + GFF575 0.70 +0.5
306,454 - GFF575 0.76 +1.2
306,454 - GFF575 0.76 +0.4
306,455 + GFF575 0.76 +0.4
306,456 + GFF575 0.76 -0.1
306,457 - GFF575 0.76 +1.1
306,624 + GFF575 0.84 +0.5
306,635 + GFF575 0.84 -0.0
306,636 - GFF575 0.84 -1.0
306,636 - GFF575 0.84 -0.2
306,767 + +0.5
306,929 + -1.2
307,025 + +1.2
307,026 - +0.5
307,026 - +0.1
307,026 - -0.1
307,077 + +1.0
307,077 + +0.8
307,290 + GFF576 0.16 -0.2
307,385 + GFF576 0.20 +1.0
307,386 - GFF576 0.21 +0.3
307,440 - GFF576 0.23 -0.0
307,466 + GFF576 0.25 -0.0
307,494 + GFF576 0.26 +0.6
307,505 + GFF576 0.27 +0.4
307,505 + GFF576 0.27 +0.2
307,642 + GFF576 0.33 +0.1
307,642 + GFF576 0.33 -2.0
307,643 - GFF576 0.34 +0.2
307,768 - GFF576 0.40 -1.2
307,770 + GFF576 0.40 +0.0
307,834 + GFF576 0.43 +0.1
307,838 + GFF576 0.43 +0.1
307,838 + GFF576 0.43 +1.4
307,838 + GFF576 0.43 +0.1
307,839 - GFF576 0.43 +0.7
307,839 - GFF576 0.43 -0.3
307,839 - GFF576 0.43 +0.6
307,841 + GFF576 0.44 +0.3

Or see this region's nucleotide sequence