Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF526 and GFF527 overlap by 1 nucleotides GFF527 and GFF528 are separated by 89 nucleotides GFF528 and GFF529 are separated by 55 nucleotides
GFF526 - ABC-type multidrug transport system, permease component, at 257,379 to 260,120
GFF526
GFF527 - FIG01045128: hypothetical protein, at 260,120 to 261,244
GFF527
GFF528 - Nickel responsive regulator NikR, at 261,334 to 261,771
GFF528
GFF529 - '4'-phosphopantetheinyl transferase (EC 2.7.8.-)' transl_table=11, at 261,827 to 262,405
GFF529
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1 at 259.125 kb on - strand, within GFF526 at 259.245 kb on + strand, within GFF526 at 259.401 kb on + strand, within GFF526 at 259.402 kb on - strand, within GFF526 at 259.639 kb on + strand, within GFF526 at 259.797 kb on + strand, within GFF526 at 259.797 kb on + strand, within GFF526 at 259.881 kb on - strand at 259.883 kb on + strand at 260.044 kb on + strand at 260.048 kb on + strand at 260.049 kb on - strand at 260.134 kb on + strand at 260.138 kb on - strand at 260.138 kb on - strand at 260.228 kb on + strand at 260.239 kb on + strand, within GFF527 at 260.323 kb on + strand, within GFF527 at 260.331 kb on - strand, within GFF527 at 260.404 kb on + strand, within GFF527 at 260.510 kb on - strand, within GFF527 at 260.522 kb on + strand, within GFF527 at 260.523 kb on - strand, within GFF527 at 260.523 kb on - strand, within GFF527 at 260.523 kb on - strand, within GFF527 at 260.524 kb on + strand, within GFF527 at 260.533 kb on + strand, within GFF527 at 260.539 kb on + strand, within GFF527 at 260.582 kb on - strand, within GFF527 at 260.621 kb on - strand, within GFF527 at 260.677 kb on + strand, within GFF527 at 260.678 kb on - strand, within GFF527 at 260.678 kb on - strand, within GFF527 at 260.692 kb on - strand, within GFF527 at 260.740 kb on - strand, within GFF527 at 260.751 kb on + strand, within GFF527 at 260.751 kb on + strand, within GFF527 at 260.985 kb on + strand, within GFF527 at 260.985 kb on + strand, within GFF527 at 260.988 kb on + strand, within GFF527 at 260.988 kb on + strand, within GFF527 at 261.013 kb on - strand, within GFF527 at 261.050 kb on - strand, within GFF527 at 261.070 kb on + strand, within GFF527 at 261.073 kb on + strand, within GFF527 at 261.242 kb on + strand at 261.305 kb on + strand at 261.412 kb on + strand, within GFF528 at 261.413 kb on - strand, within GFF528 at 261.413 kb on - strand, within GFF528 at 261.413 kb on - strand, within GFF528 at 261.468 kb on + strand, within GFF528 at 261.660 kb on + strand, within GFF528 at 261.790 kb on + strand at 261.791 kb on - strand at 262.013 kb on - strand, within GFF529 at 262.174 kb on + strand, within GFF529 at 262.175 kb on - strand, within GFF529
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI remove 259,125 - GFF526 0.64 +0.1 259,245 + GFF526 0.68 +0.4 259,401 + GFF526 0.74 -1.7 259,402 - GFF526 0.74 +0.5 259,639 + GFF526 0.82 +0.3 259,797 + GFF526 0.88 +0.3 259,797 + GFF526 0.88 -0.8 259,881 - +0.0 259,883 + -0.9 260,044 + +0.2 260,048 + +0.2 260,049 - -1.0 260,134 + -0.5 260,138 - +0.3 260,138 - +0.2 260,228 + +0.4 260,239 + GFF527 0.11 -2.0 260,323 + GFF527 0.18 -0.5 260,331 - GFF527 0.19 +0.3 260,404 + GFF527 0.25 +0.6 260,510 - GFF527 0.35 +0.5 260,522 + GFF527 0.36 +1.3 260,523 - GFF527 0.36 +0.1 260,523 - GFF527 0.36 -1.0 260,523 - GFF527 0.36 -0.0 260,524 + GFF527 0.36 +0.4 260,533 + GFF527 0.37 -0.4 260,539 + GFF527 0.37 +0.1 260,582 - GFF527 0.41 +0.2 260,621 - GFF527 0.45 +1.1 260,677 + GFF527 0.50 +0.4 260,678 - GFF527 0.50 -0.1 260,678 - GFF527 0.50 -0.4 260,692 - GFF527 0.51 +0.1 260,740 - GFF527 0.55 +0.4 260,751 + GFF527 0.56 -1.3 260,751 + GFF527 0.56 +1.4 260,985 + GFF527 0.77 +0.4 260,985 + GFF527 0.77 +0.5 260,988 + GFF527 0.77 +0.1 260,988 + GFF527 0.77 +0.7 261,013 - GFF527 0.79 +0.3 261,050 - GFF527 0.83 -0.2 261,070 + GFF527 0.84 -0.2 261,073 + GFF527 0.85 -0.8 261,242 + -0.2 261,305 + -0.2 261,412 + GFF528 0.18 +0.0 261,413 - GFF528 0.18 +0.5 261,413 - GFF528 0.18 +0.7 261,413 - GFF528 0.18 -1.2 261,468 + GFF528 0.31 +0.2 261,660 + GFF528 0.74 +1.3 261,790 + +0.3 261,791 - -2.6 262,013 - GFF529 0.32 +0.2 262,174 + GFF529 0.60 +0.6 262,175 - GFF529 0.60 -0.6
Or see this region's nucleotide sequence