Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4834

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4833 and GFF4834 are separated by 227 nucleotidesGFF4834 and GFF4835 are separated by 767 nucleotides GFF4833 - CTP synthase (EC 6.3.4.2), at 128,711 to 130,348 GFF4833 GFF4834 - Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8), at 130,576 to 131,376 GFF4834 GFF4835 - ParE toxin protein, at 132,144 to 132,434 GFF4835 Position (kb) 130 131 132Strain fitness (log2 ratio) -2 -1 0 1at 130.671 kb on + strand, within GFF4834at 130.859 kb on + strand, within GFF4834at 130.860 kb on - strand, within GFF4834at 131.050 kb on - strand, within GFF4834at 131.118 kb on + strand, within GFF4834at 131.247 kb on - strand, within GFF4834at 131.247 kb on - strand, within GFF4834at 131.263 kb on - strand, within GFF4834at 131.368 kb on - strandat 131.394 kb on - strandat 131.913 kb on + strandat 131.955 kb on + strandat 132.191 kb on + strand, within GFF4835at 132.191 kb on + strand, within GFF4835at 132.330 kb on + strand, within GFF4835

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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130,671 + GFF4834 0.12 -0.4
130,859 + GFF4834 0.35 -0.3
130,860 - GFF4834 0.35 -1.3
131,050 - GFF4834 0.59 -0.1
131,118 + GFF4834 0.68 -0.1
131,247 - GFF4834 0.84 -0.6
131,247 - GFF4834 0.84 -0.6
131,263 - GFF4834 0.86 -2.5
131,368 - -0.7
131,394 - -0.3
131,913 + +0.3
131,955 + -1.2
132,191 + GFF4835 0.16 +0.6
132,191 + GFF4835 0.16 -0.1
132,330 + GFF4835 0.64 +0.1

Or see this region's nucleotide sequence