Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF467

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF465 and GFF466 are separated by 84 nucleotidesGFF466 and GFF467 are separated by 22 nucleotidesGFF467 and GFF468 are separated by 17 nucleotides GFF465 - Long polar fimbria protein A precursor, at 185,105 to 185,629 GFF465 GFF466 - Chaperone protein lpfB precursor, at 185,714 to 186,412 GFF466 GFF467 - type 1 fimbriae anchoring protein FimD, at 186,435 to 188,963 GFF467 GFF468 - Putative fimbrial protein, at 188,981 to 190,060 GFF468 Position (kb) 186 187 188 189Strain fitness (log2 ratio) -2 -1 0 1 2at 185.473 kb on + strand, within GFF465at 185.500 kb on + strand, within GFF465at 185.512 kb on + strand, within GFF465at 185.543 kb on + strand, within GFF465at 185.544 kb on - strand, within GFF465at 185.555 kb on + strand, within GFF465at 185.556 kb on - strand, within GFF465at 185.572 kb on + strand, within GFF465at 185.577 kb on + strandat 185.577 kb on + strandat 185.657 kb on + strandat 185.813 kb on - strand, within GFF466at 185.846 kb on - strand, within GFF466at 186.038 kb on - strand, within GFF466at 186.361 kb on + strandat 186.598 kb on - strandat 186.598 kb on - strandat 186.629 kb on + strandat 187.011 kb on + strand, within GFF467at 187.012 kb on - strand, within GFF467at 187.053 kb on + strand, within GFF467at 187.056 kb on + strand, within GFF467at 187.099 kb on + strand, within GFF467at 187.100 kb on - strand, within GFF467at 187.103 kb on + strand, within GFF467at 187.103 kb on + strand, within GFF467at 187.104 kb on - strand, within GFF467at 187.104 kb on - strand, within GFF467at 187.107 kb on + strand, within GFF467at 187.108 kb on - strand, within GFF467at 187.108 kb on - strand, within GFF467at 187.109 kb on + strand, within GFF467at 187.181 kb on - strand, within GFF467at 187.264 kb on + strand, within GFF467at 187.369 kb on - strand, within GFF467at 187.383 kb on - strand, within GFF467at 187.542 kb on + strand, within GFF467at 187.578 kb on + strand, within GFF467at 187.579 kb on - strand, within GFF467at 187.579 kb on - strand, within GFF467at 187.580 kb on + strand, within GFF467at 187.580 kb on + strand, within GFF467at 187.581 kb on - strand, within GFF467at 187.581 kb on - strand, within GFF467at 187.621 kb on - strand, within GFF467at 187.621 kb on - strand, within GFF467at 187.640 kb on + strand, within GFF467at 187.678 kb on - strand, within GFF467at 187.678 kb on - strand, within GFF467at 187.696 kb on + strand, within GFF467at 187.700 kb on + strand, within GFF467at 187.713 kb on + strand, within GFF467at 187.738 kb on + strand, within GFF467at 187.739 kb on - strand, within GFF467at 187.794 kb on - strand, within GFF467at 187.848 kb on + strand, within GFF467at 187.849 kb on - strand, within GFF467at 187.855 kb on - strand, within GFF467at 187.855 kb on - strand, within GFF467at 187.873 kb on - strand, within GFF467at 187.922 kb on + strand, within GFF467at 187.992 kb on + strand, within GFF467at 188.034 kb on - strand, within GFF467at 188.085 kb on + strand, within GFF467at 188.085 kb on + strand, within GFF467at 188.098 kb on - strand, within GFF467at 188.140 kb on + strand, within GFF467at 188.183 kb on + strand, within GFF467at 188.271 kb on + strand, within GFF467at 188.272 kb on - strand, within GFF467at 188.272 kb on - strand, within GFF467at 188.273 kb on + strand, within GFF467at 188.374 kb on - strand, within GFF467at 188.374 kb on - strand, within GFF467at 188.374 kb on - strand, within GFF467at 188.374 kb on - strand, within GFF467at 188.374 kb on - strand, within GFF467at 188.401 kb on - strand, within GFF467at 188.438 kb on + strand, within GFF467at 188.438 kb on + strand, within GFF467at 188.477 kb on + strand, within GFF467at 188.563 kb on - strand, within GFF467at 188.651 kb on - strand, within GFF467at 188.824 kb on - strandat 188.824 kb on - strandat 188.925 kb on - strandat 188.980 kb on + strandat 189.074 kb on - strandat 189.094 kb on + strand, within GFF468at 189.094 kb on + strand, within GFF468at 189.095 kb on - strand, within GFF468at 189.095 kb on - strand, within GFF468at 189.111 kb on + strand, within GFF468at 189.112 kb on - strand, within GFF468at 189.112 kb on - strand, within GFF468at 189.115 kb on + strand, within GFF468at 189.195 kb on - strand, within GFF468at 189.195 kb on - strand, within GFF468at 189.223 kb on + strand, within GFF468at 189.300 kb on - strand, within GFF468at 189.316 kb on + strand, within GFF468at 189.319 kb on + strand, within GFF468at 189.365 kb on + strand, within GFF468at 189.365 kb on + strand, within GFF468at 189.366 kb on - strand, within GFF468at 189.390 kb on + strand, within GFF468at 189.436 kb on + strand, within GFF468at 189.450 kb on + strand, within GFF468at 189.478 kb on - strand, within GFF468at 189.478 kb on - strand, within GFF468at 189.514 kb on + strand, within GFF468at 189.519 kb on + strand, within GFF468at 189.520 kb on - strand, within GFF468at 189.535 kb on - strand, within GFF468at 189.567 kb on + strand, within GFF468at 189.567 kb on + strand, within GFF468at 189.577 kb on + strand, within GFF468at 189.577 kb on + strand, within GFF468at 189.579 kb on + strand, within GFF468at 189.579 kb on + strand, within GFF468at 189.580 kb on - strand, within GFF468at 189.580 kb on - strand, within GFF468at 189.595 kb on - strand, within GFF468at 189.597 kb on - strand, within GFF468at 189.598 kb on + strand, within GFF468at 189.598 kb on + strand, within GFF468at 189.598 kb on + strand, within GFF468at 189.599 kb on - strand, within GFF468at 189.599 kb on - strand, within GFF468at 189.599 kb on - strand, within GFF468

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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185,473 + GFF465 0.70 -0.6
185,500 + GFF465 0.75 +0.2
185,512 + GFF465 0.78 -0.4
185,543 + GFF465 0.83 -2.0
185,544 - GFF465 0.84 -0.2
185,555 + GFF465 0.86 -0.0
185,556 - GFF465 0.86 -0.9
185,572 + GFF465 0.89 +0.8
185,577 + -0.7
185,577 + -0.2
185,657 + -1.6
185,813 - GFF466 0.14 -0.4
185,846 - GFF466 0.19 -0.8
186,038 - GFF466 0.46 +0.3
186,361 + -0.5
186,598 - +0.3
186,598 - -0.7
186,629 + -0.7
187,011 + GFF467 0.23 -0.6
187,012 - GFF467 0.23 -1.1
187,053 + GFF467 0.24 -1.3
187,056 + GFF467 0.25 -2.0
187,099 + GFF467 0.26 +0.4
187,100 - GFF467 0.26 +0.7
187,103 + GFF467 0.26 -1.0
187,103 + GFF467 0.26 -0.4
187,104 - GFF467 0.26 -0.2
187,104 - GFF467 0.26 -0.3
187,107 + GFF467 0.27 -0.3
187,108 - GFF467 0.27 +0.4
187,108 - GFF467 0.27 -0.1
187,109 + GFF467 0.27 -1.4
187,181 - GFF467 0.29 +0.7
187,264 + GFF467 0.33 +0.6
187,369 - GFF467 0.37 -0.2
187,383 - GFF467 0.37 -0.4
187,542 + GFF467 0.44 -0.1
187,578 + GFF467 0.45 -1.8
187,579 - GFF467 0.45 +0.5
187,579 - GFF467 0.45 -0.5
187,580 + GFF467 0.45 -0.8
187,580 + GFF467 0.45 -0.6
187,581 - GFF467 0.45 +0.1
187,581 - GFF467 0.45 -0.5
187,621 - GFF467 0.47 -1.5
187,621 - GFF467 0.47 +0.6
187,640 + GFF467 0.48 -0.5
187,678 - GFF467 0.49 +0.8
187,678 - GFF467 0.49 -1.6
187,696 + GFF467 0.50 -0.4
187,700 + GFF467 0.50 -0.5
187,713 + GFF467 0.51 +0.3
187,738 + GFF467 0.52 -0.5
187,739 - GFF467 0.52 +0.6
187,794 - GFF467 0.54 -0.8
187,848 + GFF467 0.56 -0.6
187,849 - GFF467 0.56 -0.4
187,855 - GFF467 0.56 -0.6
187,855 - GFF467 0.56 +0.6
187,873 - GFF467 0.57 -0.4
187,922 + GFF467 0.59 -0.5
187,992 + GFF467 0.62 +0.3
188,034 - GFF467 0.63 -0.6
188,085 + GFF467 0.65 -0.7
188,085 + GFF467 0.65 -0.9
188,098 - GFF467 0.66 -1.3
188,140 + GFF467 0.67 +0.6
188,183 + GFF467 0.69 -0.1
188,271 + GFF467 0.73 -0.9
188,272 - GFF467 0.73 -0.5
188,272 - GFF467 0.73 +0.6
188,273 + GFF467 0.73 +0.2
188,374 - GFF467 0.77 -1.4
188,374 - GFF467 0.77 -0.2
188,374 - GFF467 0.77 +0.6
188,374 - GFF467 0.77 +0.1
188,374 - GFF467 0.77 -0.5
188,401 - GFF467 0.78 -0.3
188,438 + GFF467 0.79 -0.9
188,438 + GFF467 0.79 +0.5
188,477 + GFF467 0.81 -0.9
188,563 - GFF467 0.84 -0.2
188,651 - GFF467 0.88 -0.9
188,824 - -0.2
188,824 - -0.4
188,925 - -0.8
188,980 + -1.2
189,074 - -0.3
189,094 + GFF468 0.10 +0.5
189,094 + GFF468 0.10 +0.6
189,095 - GFF468 0.11 -0.6
189,095 - GFF468 0.11 -1.7
189,111 + GFF468 0.12 +0.1
189,112 - GFF468 0.12 -0.5
189,112 - GFF468 0.12 +0.2
189,115 + GFF468 0.12 +0.2
189,195 - GFF468 0.20 -0.5
189,195 - GFF468 0.20 -0.1
189,223 + GFF468 0.22 -0.7
189,300 - GFF468 0.30 +0.5
189,316 + GFF468 0.31 +0.0
189,319 + GFF468 0.31 +2.2
189,365 + GFF468 0.36 -0.9
189,365 + GFF468 0.36 -0.2
189,366 - GFF468 0.36 -0.1
189,390 + GFF468 0.38 -0.3
189,436 + GFF468 0.42 -0.1
189,450 + GFF468 0.43 -0.8
189,478 - GFF468 0.46 +0.3
189,478 - GFF468 0.46 -0.4
189,514 + GFF468 0.49 +0.2
189,519 + GFF468 0.50 +0.5
189,520 - GFF468 0.50 -0.8
189,535 - GFF468 0.51 -0.5
189,567 + GFF468 0.54 -0.3
189,567 + GFF468 0.54 +0.4
189,577 + GFF468 0.55 +0.8
189,577 + GFF468 0.55 +0.1
189,579 + GFF468 0.55 -1.1
189,579 + GFF468 0.55 -0.2
189,580 - GFF468 0.55 -0.5
189,580 - GFF468 0.55 -1.2
189,595 - GFF468 0.57 -1.3
189,597 - GFF468 0.57 -0.1
189,598 + GFF468 0.57 -0.0
189,598 + GFF468 0.57 -0.1
189,598 + GFF468 0.57 +1.5
189,599 - GFF468 0.57 +0.4
189,599 - GFF468 0.57 +0.6
189,599 - GFF468 0.57 -0.4

Or see this region's nucleotide sequence