Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4462

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4460 and GFF4461 overlap by 8 nucleotidesGFF4461 and GFF4462 overlap by 4 nucleotidesGFF4462 and GFF4658 are separated by 348 nucleotidesGFF4658 and GFF4463 are separated by 163 nucleotidesGFF4463 and GFF4464 are separated by 238 nucleotides GFF4460 - Putative inner membrane protein, at 245,018 to 246,658 GFF4460 GFF4461 - Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-), at 246,651 to 247,577 GFF4461 GFF4462 - Bactoprenol-linked glucose translocase, at 247,574 to 247,849 GFF4462 GFF4658 - tRNA-Pseudo-TCT, at 248,198 to 248,270 GFF4658 GFF4463 - copE1, at 248,434 to 248,565 GFF4463 GFF4464 - sensor histidine kinase, at 248,804 to 249,133 GFF4464 Position (kb) 247 248Strain fitness (log2 ratio) -1 0 1at 247.184 kb on + strand, within GFF4461at 247.184 kb on + strand, within GFF4461at 247.184 kb on + strand, within GFF4461at 247.294 kb on - strand, within GFF4461at 247.728 kb on + strand, within GFF4462at 247.729 kb on - strand, within GFF4462at 247.843 kb on + strandat 248.043 kb on - strandat 248.348 kb on + strandat 248.349 kb on - strandat 248.349 kb on - strandat 248.361 kb on - strandat 248.661 kb on - strandat 248.661 kb on - strandat 248.667 kb on - strandat 248.842 kb on + strand, within GFF4464

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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247,184 + GFF4461 0.57 -0.9
247,184 + GFF4461 0.57 -0.3
247,184 + GFF4461 0.57 +0.5
247,294 - GFF4461 0.69 +1.1
247,728 + GFF4462 0.56 +0.1
247,729 - GFF4462 0.56 -1.3
247,843 + -0.6
248,043 - -1.2
248,348 + -1.6
248,349 - -0.7
248,349 - -1.1
248,361 - -0.5
248,661 - -0.7
248,661 - -0.7
248,667 - -0.1
248,842 + GFF4464 0.12 -0.2

Or see this region's nucleotide sequence