Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4449 and GFF4450 are separated by 43 nucleotides GFF4450 and GFF4451 are separated by 30 nucleotides GFF4451 and GFF4452 are separated by 14 nucleotides
GFF4449 - Fimbriae-like adhesin FimI, at 235,001 to 235,495
GFF4449
GFF4450 - Fimbrial periplasmic chaperone SfmC, at 235,539 to 236,231
GFF4450
GFF4451 - Outer membrane usher protein SfmD, at 236,262 to 238,874
GFF4451
GFF4452 - Fimbriae-like adhesin SfmH, at 238,889 to 239,896
GFF4452
Position (kb) 236
237
238
239 Strain fitness (log2 ratio) -1
0
1
2
3 at 235.350 kb on + strand, within GFF4449 at 235.354 kb on + strand, within GFF4449 at 235.355 kb on - strand, within GFF4449 at 235.477 kb on + strand at 235.625 kb on - strand, within GFF4450 at 235.682 kb on + strand, within GFF4450 at 235.685 kb on + strand, within GFF4450 at 235.814 kb on + strand, within GFF4450 at 236.056 kb on - strand, within GFF4450 at 236.058 kb on + strand, within GFF4450 at 236.305 kb on + strand at 236.305 kb on + strand at 236.305 kb on + strand at 236.305 kb on + strand at 236.655 kb on - strand, within GFF4451 at 236.764 kb on - strand, within GFF4451 at 236.884 kb on - strand, within GFF4451 at 237.092 kb on + strand, within GFF4451 at 237.092 kb on + strand, within GFF4451 at 237.092 kb on + strand, within GFF4451 at 237.093 kb on - strand, within GFF4451 at 237.093 kb on - strand, within GFF4451 at 237.096 kb on + strand, within GFF4451 at 237.097 kb on - strand, within GFF4451 at 237.166 kb on + strand, within GFF4451 at 237.181 kb on - strand, within GFF4451 at 237.185 kb on + strand, within GFF4451 at 237.189 kb on + strand, within GFF4451 at 237.239 kb on + strand, within GFF4451 at 237.271 kb on + strand, within GFF4451 at 237.312 kb on + strand, within GFF4451 at 237.355 kb on - strand, within GFF4451 at 237.633 kb on - strand, within GFF4451 at 237.633 kb on - strand, within GFF4451 at 237.633 kb on - strand, within GFF4451 at 237.717 kb on - strand, within GFF4451 at 237.893 kb on + strand, within GFF4451 at 237.908 kb on + strand, within GFF4451 at 237.915 kb on + strand, within GFF4451 at 237.949 kb on + strand, within GFF4451 at 238.022 kb on + strand, within GFF4451 at 238.023 kb on - strand, within GFF4451 at 238.073 kb on + strand, within GFF4451 at 238.085 kb on + strand, within GFF4451 at 238.086 kb on - strand, within GFF4451 at 238.086 kb on - strand, within GFF4451 at 238.089 kb on + strand, within GFF4451 at 238.131 kb on - strand, within GFF4451 at 238.173 kb on - strand, within GFF4451 at 238.203 kb on - strand, within GFF4451 at 238.208 kb on + strand, within GFF4451 at 238.218 kb on + strand, within GFF4451 at 238.220 kb on + strand, within GFF4451 at 238.221 kb on - strand, within GFF4451 at 238.221 kb on - strand, within GFF4451 at 238.255 kb on - strand, within GFF4451 at 238.282 kb on - strand, within GFF4451 at 238.282 kb on - strand, within GFF4451 at 238.305 kb on - strand, within GFF4451 at 238.305 kb on - strand, within GFF4451 at 238.346 kb on + strand, within GFF4451 at 238.481 kb on - strand, within GFF4451 at 238.490 kb on + strand, within GFF4451 at 238.508 kb on + strand, within GFF4451 at 238.509 kb on - strand, within GFF4451 at 238.606 kb on + strand, within GFF4451 at 238.698 kb on - strand at 238.800 kb on + strand at 239.133 kb on - strand, within GFF4452 at 239.133 kb on - strand, within GFF4452 at 239.136 kb on + strand, within GFF4452 at 239.177 kb on + strand, within GFF4452 at 239.195 kb on + strand, within GFF4452 at 239.239 kb on - strand, within GFF4452 at 239.258 kb on + strand, within GFF4452 at 239.281 kb on + strand, within GFF4452 at 239.362 kb on + strand, within GFF4452 at 239.399 kb on + strand, within GFF4452 at 239.400 kb on - strand, within GFF4452 at 239.440 kb on - strand, within GFF4452 at 239.441 kb on + strand, within GFF4452 at 239.450 kb on - strand, within GFF4452 at 239.541 kb on + strand, within GFF4452 at 239.605 kb on + strand, within GFF4452 at 239.614 kb on + strand, within GFF4452 at 239.720 kb on - strand, within GFF4452 at 239.722 kb on + strand, within GFF4452 at 239.806 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI remove 235,350 + GFF4449 0.71 +2.8 235,354 + GFF4449 0.71 +0.0 235,355 - GFF4449 0.72 -1.4 235,477 + -0.4 235,625 - GFF4450 0.12 -1.0 235,682 + GFF4450 0.21 +0.6 235,685 + GFF4450 0.21 -0.0 235,814 + GFF4450 0.40 +1.4 236,056 - GFF4450 0.75 -0.0 236,058 + GFF4450 0.75 -0.1 236,305 + +0.2 236,305 + -0.2 236,305 + -0.0 236,305 + -0.4 236,655 - GFF4451 0.15 +0.8 236,764 - GFF4451 0.19 -0.3 236,884 - GFF4451 0.24 -0.1 237,092 + GFF4451 0.32 +1.0 237,092 + GFF4451 0.32 -0.9 237,092 + GFF4451 0.32 +1.1 237,093 - GFF4451 0.32 -0.0 237,093 - GFF4451 0.32 +0.3 237,096 + GFF4451 0.32 +0.5 237,097 - GFF4451 0.32 +0.1 237,166 + GFF4451 0.35 +0.5 237,181 - GFF4451 0.35 -1.7 237,185 + GFF4451 0.35 +0.2 237,189 + GFF4451 0.35 +0.7 237,239 + GFF4451 0.37 -0.3 237,271 + GFF4451 0.39 +0.4 237,312 + GFF4451 0.40 -0.5 237,355 - GFF4451 0.42 -0.1 237,633 - GFF4451 0.52 +0.7 237,633 - GFF4451 0.52 +0.6 237,633 - GFF4451 0.52 +0.0 237,717 - GFF4451 0.56 +0.2 237,893 + GFF4451 0.62 -0.9 237,908 + GFF4451 0.63 +0.0 237,915 + GFF4451 0.63 +0.5 237,949 + GFF4451 0.65 -0.0 238,022 + GFF4451 0.67 +0.8 238,023 - GFF4451 0.67 +0.5 238,073 + GFF4451 0.69 +0.6 238,085 + GFF4451 0.70 +0.7 238,086 - GFF4451 0.70 +0.3 238,086 - GFF4451 0.70 -0.3 238,089 + GFF4451 0.70 +0.5 238,131 - GFF4451 0.72 +0.1 238,173 - GFF4451 0.73 +0.3 238,203 - GFF4451 0.74 +0.9 238,208 + GFF4451 0.74 +1.2 238,218 + GFF4451 0.75 -1.1 238,220 + GFF4451 0.75 -0.1 238,221 - GFF4451 0.75 -0.3 238,221 - GFF4451 0.75 -0.1 238,255 - GFF4451 0.76 -0.0 238,282 - GFF4451 0.77 +1.3 238,282 - GFF4451 0.77 -0.1 238,305 - GFF4451 0.78 +0.0 238,305 - GFF4451 0.78 +1.0 238,346 + GFF4451 0.80 -1.4 238,481 - GFF4451 0.85 +0.8 238,490 + GFF4451 0.85 +0.5 238,508 + GFF4451 0.86 -0.1 238,509 - GFF4451 0.86 -0.4 238,606 + GFF4451 0.90 -0.9 238,698 - +1.0 238,800 + +0.3 239,133 - GFF4452 0.24 +0.2 239,133 - GFF4452 0.24 +0.3 239,136 + GFF4452 0.25 -1.1 239,177 + GFF4452 0.29 +0.6 239,195 + GFF4452 0.30 +0.6 239,239 - GFF4452 0.35 -0.5 239,258 + GFF4452 0.37 +0.9 239,281 + GFF4452 0.39 -0.5 239,362 + GFF4452 0.47 +0.3 239,399 + GFF4452 0.51 +1.1 239,400 - GFF4452 0.51 +0.6 239,440 - GFF4452 0.55 -0.3 239,441 + GFF4452 0.55 -0.1 239,450 - GFF4452 0.56 -0.5 239,541 + GFF4452 0.65 +3.0 239,605 + GFF4452 0.71 +0.5 239,614 + GFF4452 0.72 +0.3 239,720 - GFF4452 0.82 +0.5 239,722 + GFF4452 0.83 -0.4 239,806 + +0.0
Or see this region's nucleotide sequence