Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4236

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4234 and GFF4235 are separated by 155 nucleotidesGFF4235 and GFF4236 overlap by 4 nucleotidesGFF4236 and GFF4237 are separated by 323 nucleotides GFF4234 - Possible transmembrane regulator, at 15,815 to 16,549 GFF4234 GFF4235 - Putative inner membrane protein, at 16,705 to 16,821 GFF4235 GFF4236 - Putative inner membrane protein, at 16,818 to 17,021 GFF4236 GFF4237 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 17,345 to 18,895 GFF4237 Position (kb) 16 17 18Strain fitness (log2 ratio) -2 -1 0 1at 16.066 kb on - strand, within GFF4234at 16.787 kb on + strand, within GFF4235at 17.254 kb on - strandat 17.465 kb on - strandat 17.570 kb on + strand, within GFF4237at 17.570 kb on + strand, within GFF4237at 17.747 kb on + strand, within GFF4237at 17.747 kb on + strand, within GFF4237at 17.747 kb on + strand, within GFF4237at 17.748 kb on - strand, within GFF4237at 17.802 kb on - strand, within GFF4237at 17.802 kb on - strand, within GFF4237

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
remove
16,066 - GFF4234 0.34 -0.8
16,787 + GFF4235 0.70 +0.0
17,254 - -0.5
17,465 - -0.3
17,570 + GFF4237 0.15 -0.2
17,570 + GFF4237 0.15 -2.7
17,747 + GFF4237 0.26 +1.2
17,747 + GFF4237 0.26 -0.4
17,747 + GFF4237 0.26 -0.2
17,748 - GFF4237 0.26 -0.6
17,802 - GFF4237 0.29 -0.7
17,802 - GFF4237 0.29 -0.9

Or see this region's nucleotide sequence