Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3744

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3742 and GFF3743 are separated by 455 nucleotidesGFF3743 and GFF3744 are separated by 53 nucleotidesGFF3744 and GFF3745 are separated by 347 nucleotidesGFF3745 and GFF3746 are separated by 401 nucleotides GFF3742 - FIG01047148: hypothetical protein, at 9,490 to 10,017 GFF3742 GFF3743 - FIG01046717: hypothetical protein, at 10,473 to 10,838 GFF3743 GFF3744 - O-antigen acetylase, at 10,892 to 12,721 GFF3744 GFF3745 - virulence protein, at 13,069 to 13,182 GFF3745 GFF3746 - hypothetical protein, at 13,584 to 13,718 GFF3746 Position (kb) 10 11 12 13Strain fitness (log2 ratio) -1 0 1 2at 10.015 kb on + strandat 10.524 kb on + strand, within GFF3743at 10.737 kb on + strand, within GFF3743at 11.026 kb on + strandat 11.307 kb on - strand, within GFF3744at 12.019 kb on + strand, within GFF3744at 12.052 kb on - strand, within GFF3744at 12.105 kb on + strand, within GFF3744at 12.106 kb on - strand, within GFF3744at 12.193 kb on + strand, within GFF3744at 12.825 kb on + strandat 13.279 kb on - strandat 13.294 kb on + strandat 13.372 kb on - strandat 13.440 kb on - strandat 13.462 kb on + strandat 13.463 kb on - strandat 13.586 kb on - strandat 13.640 kb on + strand, within GFF3746

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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10,015 + +1.1
10,524 + GFF3743 0.14 -0.9
10,737 + GFF3743 0.72 -0.9
11,026 + +0.7
11,307 - GFF3744 0.23 -0.5
12,019 + GFF3744 0.62 +0.3
12,052 - GFF3744 0.63 +0.8
12,105 + GFF3744 0.66 +0.9
12,106 - GFF3744 0.66 -0.5
12,193 + GFF3744 0.71 -0.5
12,825 + -0.5
13,279 - +0.1
13,294 + -0.1
13,372 - +0.3
13,440 - +0.4
13,462 + +2.0
13,463 - -0.3
13,586 - -1.5
13,640 + GFF3746 0.41 +0.3

Or see this region's nucleotide sequence