Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3573 and GFF3574 are separated by 0 nucleotides GFF3574 and GFF3575 are separated by 181 nucleotides GFF3575 and GFF3576 overlap by 26 nucleotides GFF3576 and GFF3577 are separated by 97 nucleotides
GFF3573 - Tetrathionate reductase subunit C, at 331,463 to 332,485
GFF3573
GFF3574 - Tetrathionate reductase subunit B, at 332,486 to 333,220
GFF3574
GFF3575 - Tetrathionate reductase sensory transduction histidine kinase, at 333,402 to 335,180
GFF3575
GFF3576 - Tetrathionate reductase two-component response regulator, at 335,155 to 335,775
GFF3576
GFF3577 - FIG00637899: hypothetical protein, at 335,873 to 336,085
GFF3577
Position (kb) 333
334
335
336 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 332.434 kb on + strand at 332.435 kb on - strand at 332.435 kb on - strand at 332.560 kb on - strand, within GFF3574 at 332.595 kb on - strand, within GFF3574 at 332.660 kb on - strand, within GFF3574 at 332.790 kb on + strand, within GFF3574 at 332.791 kb on - strand, within GFF3574 at 333.080 kb on - strand, within GFF3574 at 333.090 kb on + strand, within GFF3574 at 333.451 kb on + strand at 333.486 kb on - strand at 333.553 kb on + strand at 333.743 kb on + strand, within GFF3575 at 333.744 kb on - strand, within GFF3575 at 333.744 kb on - strand, within GFF3575 at 333.744 kb on - strand, within GFF3575 at 333.864 kb on + strand, within GFF3575 at 333.866 kb on + strand, within GFF3575 at 333.866 kb on + strand, within GFF3575 at 333.948 kb on + strand, within GFF3575 at 333.948 kb on + strand, within GFF3575 at 333.948 kb on + strand, within GFF3575 at 333.949 kb on - strand, within GFF3575 at 334.007 kb on + strand, within GFF3575 at 334.099 kb on - strand, within GFF3575 at 334.420 kb on + strand, within GFF3575 at 334.421 kb on - strand, within GFF3575 at 334.508 kb on + strand, within GFF3575 at 334.970 kb on - strand, within GFF3575 at 334.972 kb on + strand, within GFF3575 at 335.134 kb on + strand at 335.185 kb on - strand at 335.300 kb on + strand, within GFF3576 at 335.408 kb on + strand, within GFF3576 at 335.542 kb on - strand, within GFF3576 at 335.543 kb on + strand, within GFF3576 at 335.543 kb on + strand, within GFF3576 at 335.655 kb on - strand, within GFF3576 at 335.765 kb on - strand at 336.049 kb on + strand, within GFF3577 at 336.049 kb on + strand, within GFF3577
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI remove 332,434 + +1.0 332,435 - -0.1 332,435 - +0.2 332,560 - GFF3574 0.10 -0.1 332,595 - GFF3574 0.15 +1.5 332,660 - GFF3574 0.24 -0.7 332,790 + GFF3574 0.41 +0.4 332,791 - GFF3574 0.41 +0.1 333,080 - GFF3574 0.81 +2.9 333,090 + GFF3574 0.82 -0.1 333,451 + +0.5 333,486 - -0.1 333,553 + +0.1 333,743 + GFF3575 0.19 +1.1 333,744 - GFF3575 0.19 +0.8 333,744 - GFF3575 0.19 +0.1 333,744 - GFF3575 0.19 -3.8 333,864 + GFF3575 0.26 +0.8 333,866 + GFF3575 0.26 +0.1 333,866 + GFF3575 0.26 +1.4 333,948 + GFF3575 0.31 +0.4 333,948 + GFF3575 0.31 +0.3 333,948 + GFF3575 0.31 +0.8 333,949 - GFF3575 0.31 +0.4 334,007 + GFF3575 0.34 +0.4 334,099 - GFF3575 0.39 +0.3 334,420 + GFF3575 0.57 -0.8 334,421 - GFF3575 0.57 -1.9 334,508 + GFF3575 0.62 +0.5 334,970 - GFF3575 0.88 -0.8 334,972 + GFF3575 0.88 +0.4 335,134 + -0.1 335,185 - -1.1 335,300 + GFF3576 0.23 +0.1 335,408 + GFF3576 0.41 +0.6 335,542 - GFF3576 0.62 -0.1 335,543 + GFF3576 0.62 -1.6 335,543 + GFF3576 0.62 -0.5 335,655 - GFF3576 0.81 -0.8 335,765 - -0.1 336,049 + GFF3577 0.83 -3.1 336,049 + GFF3577 0.83 -0.8
Or see this region's nucleotide sequence