Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF303

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF302 and GFF303 are separated by 11 nucleotidesGFF303 and GFF304 are separated by 74 nucleotidesGFF304 and GFF305 overlap by 1 nucleotides GFF302 - Homolog of fucose/glucose/galactose permeases, at 19,518 to 20,834 GFF302 GFF303 - Putative uncharacterized protein STY3991, at 20,846 to 21,859 GFF303 GFF304 - Transcriptional regulatory protein UhpA, at 21,934 to 22,524 GFF304 GFF305 - Sensor histidine protein kinase UhpB, glucose-6-phosphate specific (EC 2.7.13.3), at 22,524 to 24,026 GFF305 Position (kb) 20 21 22Strain fitness (log2 ratio) -2 -1 0 1 2at 19.849 kb on - strand, within GFF302at 19.849 kb on - strand, within GFF302at 19.921 kb on - strand, within GFF302at 20.022 kb on + strand, within GFF302at 20.022 kb on + strand, within GFF302at 20.132 kb on + strand, within GFF302at 20.132 kb on + strand, within GFF302at 20.133 kb on - strand, within GFF302at 20.136 kb on + strand, within GFF302at 20.136 kb on + strand, within GFF302at 20.137 kb on - strand, within GFF302at 20.144 kb on + strand, within GFF302at 20.167 kb on + strand, within GFF302at 20.243 kb on + strand, within GFF302at 20.254 kb on - strand, within GFF302at 20.305 kb on - strand, within GFF302at 20.400 kb on + strand, within GFF302at 20.401 kb on - strand, within GFF302at 20.515 kb on - strand, within GFF302at 20.548 kb on - strand, within GFF302at 20.616 kb on - strand, within GFF302at 20.703 kb on + strandat 20.860 kb on + strandat 20.896 kb on + strandat 20.897 kb on - strandat 20.921 kb on - strandat 21.104 kb on + strand, within GFF303at 21.104 kb on + strand, within GFF303at 21.105 kb on - strand, within GFF303at 21.163 kb on + strand, within GFF303at 21.163 kb on + strand, within GFF303at 21.261 kb on - strand, within GFF303at 21.261 kb on - strand, within GFF303at 21.314 kb on - strand, within GFF303at 21.383 kb on + strand, within GFF303at 21.383 kb on + strand, within GFF303at 21.384 kb on - strand, within GFF303at 21.384 kb on - strand, within GFF303at 21.401 kb on + strand, within GFF303at 21.401 kb on + strand, within GFF303at 21.401 kb on + strand, within GFF303at 21.402 kb on - strand, within GFF303at 21.402 kb on - strand, within GFF303at 21.407 kb on + strand, within GFF303at 21.407 kb on + strand, within GFF303at 21.611 kb on + strand, within GFF303at 21.714 kb on - strand, within GFF303at 21.714 kb on - strand, within GFF303at 21.899 kb on + strandat 22.077 kb on - strand, within GFF304at 22.082 kb on + strand, within GFF304at 22.082 kb on + strand, within GFF304at 22.082 kb on + strand, within GFF304at 22.082 kb on + strand, within GFF304at 22.083 kb on - strand, within GFF304at 22.096 kb on - strand, within GFF304at 22.110 kb on + strand, within GFF304at 22.233 kb on + strand, within GFF304at 22.273 kb on - strand, within GFF304at 22.273 kb on - strand, within GFF304at 22.294 kb on + strand, within GFF304at 22.295 kb on - strand, within GFF304at 22.397 kb on + strand, within GFF304at 22.522 kb on + strandat 22.523 kb on - strandat 22.676 kb on + strand, within GFF305at 22.677 kb on - strand, within GFF305at 22.737 kb on + strand, within GFF305at 22.858 kb on + strand, within GFF305

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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19,849 - GFF302 0.25 -0.9
19,849 - GFF302 0.25 -0.2
19,921 - GFF302 0.31 -1.4
20,022 + GFF302 0.38 -0.3
20,022 + GFF302 0.38 +0.6
20,132 + GFF302 0.47 -0.1
20,132 + GFF302 0.47 +0.2
20,133 - GFF302 0.47 -0.8
20,136 + GFF302 0.47 -0.0
20,136 + GFF302 0.47 -0.2
20,137 - GFF302 0.47 -0.1
20,144 + GFF302 0.48 -0.1
20,167 + GFF302 0.49 -0.4
20,243 + GFF302 0.55 +1.4
20,254 - GFF302 0.56 -0.3
20,305 - GFF302 0.60 -0.7
20,400 + GFF302 0.67 +0.2
20,401 - GFF302 0.67 -1.2
20,515 - GFF302 0.76 -0.4
20,548 - GFF302 0.78 -1.7
20,616 - GFF302 0.83 +0.9
20,703 + +0.4
20,860 + +1.4
20,896 + +0.7
20,897 - -0.6
20,921 - +0.4
21,104 + GFF303 0.25 +0.3
21,104 + GFF303 0.25 +0.3
21,105 - GFF303 0.26 -0.7
21,163 + GFF303 0.31 -0.1
21,163 + GFF303 0.31 +0.6
21,261 - GFF303 0.41 -0.2
21,261 - GFF303 0.41 -0.1
21,314 - GFF303 0.46 +0.2
21,383 + GFF303 0.53 -0.3
21,383 + GFF303 0.53 +0.4
21,384 - GFF303 0.53 +0.6
21,384 - GFF303 0.53 +0.7
21,401 + GFF303 0.55 +0.4
21,401 + GFF303 0.55 -0.9
21,401 + GFF303 0.55 +1.3
21,402 - GFF303 0.55 -0.0
21,402 - GFF303 0.55 -0.7
21,407 + GFF303 0.55 +0.1
21,407 + GFF303 0.55 -2.2
21,611 + GFF303 0.75 +0.0
21,714 - GFF303 0.86 +0.2
21,714 - GFF303 0.86 +1.0
21,899 + +0.4
22,077 - GFF304 0.24 -0.5
22,082 + GFF304 0.25 -0.1
22,082 + GFF304 0.25 +0.9
22,082 + GFF304 0.25 -0.1
22,082 + GFF304 0.25 +0.8
22,083 - GFF304 0.25 +0.3
22,096 - GFF304 0.27 +1.1
22,110 + GFF304 0.30 +0.6
22,233 + GFF304 0.51 +0.6
22,273 - GFF304 0.57 +0.3
22,273 - GFF304 0.57 -0.1
22,294 + GFF304 0.61 +0.8
22,295 - GFF304 0.61 +0.1
22,397 + GFF304 0.78 +0.7
22,522 + +0.6
22,523 - +1.8
22,676 + GFF305 0.10 +0.4
22,677 - GFF305 0.10 +0.8
22,737 + GFF305 0.14 -0.0
22,858 + GFF305 0.22 +0.4

Or see this region's nucleotide sequence