Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1178

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1175 and GFF1176 are separated by 19 nucleotidesGFF1176 and GFF1177 are separated by 8 nucleotidesGFF1177 and GFF1178 overlap by 32 nucleotidesGFF1178 and GFF1179 are separated by 113 nucleotidesGFF1179 and GFF1180 overlap by 14 nucleotidesGFF1180 and GFF1181 overlap by 11 nucleotides GFF1175 - IncF plasmid conjugative transfer protein TraN, at 20,907 to 22,733 GFF1175 GFF1176 - IncF plasmid conjugative transfer protein TrbE, at 22,753 to 22,959 GFF1176 GFF1177 - IncF plasmid conjugative transfer pilus assembly protein TraF, at 22,968 to 23,720 GFF1177 GFF1178 - hypothetical protein, at 23,689 to 23,820 GFF1178 GFF1179 - IncF plasmid conjugative transfer protein TraQ, at 23,934 to 24,227 GFF1179 GFF1180 - IncF plasmid conjugative transfer protein TrbB, at 24,214 to 24,762 GFF1180 GFF1181 - IncF plasmid conjugative transfer pilus assembly protein TraH, at 24,752 to 26,134 GFF1181 Position (kb) 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 22.731 kb on + strandat 22.732 kb on - strandat 22.751 kb on + strandat 22.751 kb on + strandat 22.752 kb on - strandat 22.786 kb on - strand, within GFF1176at 22.786 kb on - strand, within GFF1176at 22.826 kb on + strand, within GFF1176at 22.870 kb on - strand, within GFF1176at 22.870 kb on - strand, within GFF1176at 22.879 kb on + strand, within GFF1176at 22.879 kb on + strand, within GFF1176at 22.880 kb on - strand, within GFF1176at 22.880 kb on - strand, within GFF1176at 22.944 kb on + strandat 22.967 kb on + strandat 22.967 kb on + strandat 22.968 kb on - strandat 22.968 kb on - strandat 23.005 kb on + strandat 23.055 kb on + strand, within GFF1177at 23.056 kb on - strand, within GFF1177at 23.097 kb on - strand, within GFF1177at 23.130 kb on - strand, within GFF1177at 23.130 kb on - strand, within GFF1177at 23.217 kb on + strand, within GFF1177at 23.307 kb on + strand, within GFF1177at 23.307 kb on + strand, within GFF1177at 23.308 kb on - strand, within GFF1177at 23.308 kb on - strand, within GFF1177at 23.319 kb on + strand, within GFF1177at 23.329 kb on - strand, within GFF1177at 23.341 kb on + strand, within GFF1177at 23.342 kb on - strand, within GFF1177at 23.406 kb on + strand, within GFF1177at 23.407 kb on - strand, within GFF1177at 23.412 kb on - strand, within GFF1177at 23.425 kb on - strand, within GFF1177at 23.468 kb on + strand, within GFF1177at 23.487 kb on + strand, within GFF1177at 23.487 kb on + strand, within GFF1177at 23.487 kb on + strand, within GFF1177at 23.612 kb on - strand, within GFF1177at 23.655 kb on - strandat 23.739 kb on + strand, within GFF1178at 23.739 kb on + strand, within GFF1178at 23.905 kb on - strandat 23.907 kb on - strandat 24.226 kb on - strandat 24.303 kb on + strand, within GFF1180at 24.489 kb on - strand, within GFF1180at 24.512 kb on - strand, within GFF1180at 24.534 kb on + strand, within GFF1180at 24.671 kb on + strand, within GFF1180at 24.672 kb on - strand, within GFF1180at 24.739 kb on + strandat 24.740 kb on - strandat 24.740 kb on - strandat 24.740 kb on - strandat 24.740 kb on - strandat 24.740 kb on - strandat 24.760 kb on + strandat 24.772 kb on + strandat 24.772 kb on + strandat 24.786 kb on + strandat 24.787 kb on - strandat 24.789 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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22,731 + -0.8
22,732 - -0.8
22,751 + +0.5
22,751 + -0.5
22,752 - -0.1
22,786 - GFF1176 0.16 -0.8
22,786 - GFF1176 0.16 +0.1
22,826 + GFF1176 0.35 -0.4
22,870 - GFF1176 0.57 +1.2
22,870 - GFF1176 0.57 +0.3
22,879 + GFF1176 0.61 +0.0
22,879 + GFF1176 0.61 -0.9
22,880 - GFF1176 0.61 +0.3
22,880 - GFF1176 0.61 +0.2
22,944 + -0.8
22,967 + -1.3
22,967 + +0.9
22,968 - -0.2
22,968 - -0.4
23,005 + -0.4
23,055 + GFF1177 0.12 -0.1
23,056 - GFF1177 0.12 -0.5
23,097 - GFF1177 0.17 +0.8
23,130 - GFF1177 0.22 -0.0
23,130 - GFF1177 0.22 -0.0
23,217 + GFF1177 0.33 -1.1
23,307 + GFF1177 0.45 -0.1
23,307 + GFF1177 0.45 -0.0
23,308 - GFF1177 0.45 -0.3
23,308 - GFF1177 0.45 -0.3
23,319 + GFF1177 0.47 -0.0
23,329 - GFF1177 0.48 -0.1
23,341 + GFF1177 0.50 -0.5
23,342 - GFF1177 0.50 -1.1
23,406 + GFF1177 0.58 -0.3
23,407 - GFF1177 0.58 +0.0
23,412 - GFF1177 0.59 +0.7
23,425 - GFF1177 0.61 -0.2
23,468 + GFF1177 0.66 +0.7
23,487 + GFF1177 0.69 -1.2
23,487 + GFF1177 0.69 -0.8
23,487 + GFF1177 0.69 -1.0
23,612 - GFF1177 0.86 -0.5
23,655 - -1.8
23,739 + GFF1178 0.38 +0.2
23,739 + GFF1178 0.38 -1.2
23,905 - -0.3
23,907 - -0.2
24,226 - +0.7
24,303 + GFF1180 0.16 -0.3
24,489 - GFF1180 0.50 +1.6
24,512 - GFF1180 0.54 -0.3
24,534 + GFF1180 0.58 +0.2
24,671 + GFF1180 0.83 -0.4
24,672 - GFF1180 0.83 -0.5
24,739 + +0.0
24,740 - +0.2
24,740 - +2.2
24,740 - +0.1
24,740 - +0.3
24,740 - -0.6
24,760 + +0.3
24,772 + +1.0
24,772 + -0.3
24,786 + -0.2
24,787 - -1.5
24,789 + -0.5

Or see this region's nucleotide sequence