Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1008

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1006 and GFF1007 are separated by 10 nucleotidesGFF1007 and GFF1008 are separated by 94 nucleotidesGFF1008 and GFF1009 are separated by 465 nucleotides GFF1006 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 189,652 to 190,608 GFF1006 GFF1007 - COG2879, Hypothetical small protein yjiX, at 190,619 to 190,822 GFF1007 GFF1008 - Carbon starvation protein A paralog, at 190,917 to 192,968 GFF1008 GFF1009 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 193,434 to 195,095 GFF1009 Position (kb) 190 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2at 189.961 kb on - strand, within GFF1006at 190.051 kb on + strand, within GFF1006at 190.177 kb on + strand, within GFF1006at 190.248 kb on - strand, within GFF1006at 190.259 kb on - strand, within GFF1006at 190.375 kb on + strand, within GFF1006at 190.376 kb on - strand, within GFF1006at 190.379 kb on - strand, within GFF1006at 190.547 kb on - strandat 190.581 kb on + strandat 190.586 kb on - strandat 190.609 kb on - strandat 190.609 kb on - strandat 190.656 kb on + strand, within GFF1007at 190.692 kb on + strand, within GFF1007at 190.693 kb on - strand, within GFF1007at 190.693 kb on - strand, within GFF1007at 190.693 kb on - strand, within GFF1007at 190.701 kb on + strand, within GFF1007at 190.701 kb on + strand, within GFF1007at 190.701 kb on + strand, within GFF1007at 190.702 kb on - strand, within GFF1007at 190.702 kb on - strand, within GFF1007at 190.702 kb on - strand, within GFF1007at 190.740 kb on + strand, within GFF1007at 190.741 kb on - strand, within GFF1007at 190.741 kb on - strand, within GFF1007at 190.741 kb on - strand, within GFF1007at 190.741 kb on - strand, within GFF1007at 190.813 kb on + strandat 190.877 kb on + strandat 191.033 kb on + strandat 191.034 kb on - strandat 191.034 kb on - strandat 191.037 kb on - strandat 191.041 kb on + strandat 191.063 kb on + strandat 191.083 kb on + strandat 191.083 kb on + strandat 191.159 kb on + strand, within GFF1008at 191.177 kb on - strand, within GFF1008at 191.282 kb on - strand, within GFF1008at 191.352 kb on - strand, within GFF1008at 191.422 kb on + strand, within GFF1008at 191.422 kb on + strand, within GFF1008at 191.651 kb on + strand, within GFF1008at 191.691 kb on + strand, within GFF1008at 192.124 kb on + strand, within GFF1008at 192.365 kb on + strand, within GFF1008at 192.437 kb on - strand, within GFF1008at 192.437 kb on - strand, within GFF1008at 192.555 kb on + strand, within GFF1008at 192.555 kb on + strand, within GFF1008at 192.555 kb on + strand, within GFF1008at 192.898 kb on + strandat 192.899 kb on - strandat 192.907 kb on + strandat 192.908 kb on - strandat 193.039 kb on - strandat 193.071 kb on - strandat 193.089 kb on + strandat 193.138 kb on - strandat 193.149 kb on + strandat 193.149 kb on + strandat 193.150 kb on - strandat 193.150 kb on - strandat 193.191 kb on - strandat 193.194 kb on + strandat 193.223 kb on - strandat 193.297 kb on + strandat 193.331 kb on + strandat 193.349 kb on - strandat 193.358 kb on - strandat 193.409 kb on + strandat 193.409 kb on + strandat 193.409 kb on + strandat 193.755 kb on + strand, within GFF1009at 193.818 kb on + strand, within GFF1009at 193.818 kb on + strand, within GFF1009at 193.818 kb on + strand, within GFF1009at 193.818 kb on + strand, within GFF1009at 193.819 kb on - strand, within GFF1009at 193.819 kb on - strand, within GFF1009at 193.819 kb on - strand, within GFF1009at 193.823 kb on + strand, within GFF1009at 193.823 kb on + strand, within GFF1009at 193.908 kb on + strand, within GFF1009at 193.932 kb on + strand, within GFF1009at 193.932 kb on + strand, within GFF1009at 193.932 kb on + strand, within GFF1009at 193.932 kb on + strand, within GFF1009at 193.933 kb on - strand, within GFF1009at 193.941 kb on + strand, within GFF1009at 193.942 kb on - strand, within GFF1009at 193.943 kb on + strand, within GFF1009at 193.943 kb on + strand, within GFF1009at 193.943 kb on + strand, within GFF1009at 193.965 kb on + strand, within GFF1009at 193.965 kb on + strand, within GFF1009

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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189,961 - GFF1006 0.32 +0.0
190,051 + GFF1006 0.42 -0.2
190,177 + GFF1006 0.55 +0.6
190,248 - GFF1006 0.62 -0.2
190,259 - GFF1006 0.63 -0.1
190,375 + GFF1006 0.76 -0.2
190,376 - GFF1006 0.76 +0.8
190,379 - GFF1006 0.76 +0.2
190,547 - -0.4
190,581 + +0.8
190,586 - -2.4
190,609 - -1.1
190,609 - -0.0
190,656 + GFF1007 0.18 +0.9
190,692 + GFF1007 0.36 -0.4
190,693 - GFF1007 0.36 -0.1
190,693 - GFF1007 0.36 -2.1
190,693 - GFF1007 0.36 -0.3
190,701 + GFF1007 0.40 +0.9
190,701 + GFF1007 0.40 -0.7
190,701 + GFF1007 0.40 +0.3
190,702 - GFF1007 0.41 +0.1
190,702 - GFF1007 0.41 -0.1
190,702 - GFF1007 0.41 -0.5
190,740 + GFF1007 0.59 +0.4
190,741 - GFF1007 0.60 +0.4
190,741 - GFF1007 0.60 +0.2
190,741 - GFF1007 0.60 +0.4
190,741 - GFF1007 0.60 -0.4
190,813 + -1.0
190,877 + -0.4
191,033 + +0.4
191,034 - -0.5
191,034 - -0.3
191,037 - +1.0
191,041 + -0.7
191,063 + -0.4
191,083 + -0.1
191,083 + +0.2
191,159 + GFF1008 0.12 -0.5
191,177 - GFF1008 0.13 +0.8
191,282 - GFF1008 0.18 +0.7
191,352 - GFF1008 0.21 +0.0
191,422 + GFF1008 0.25 +0.1
191,422 + GFF1008 0.25 -0.7
191,651 + GFF1008 0.36 +1.1
191,691 + GFF1008 0.38 +0.6
192,124 + GFF1008 0.59 -0.5
192,365 + GFF1008 0.71 +1.2
192,437 - GFF1008 0.74 +0.1
192,437 - GFF1008 0.74 +1.1
192,555 + GFF1008 0.80 +1.8
192,555 + GFF1008 0.80 +0.3
192,555 + GFF1008 0.80 +0.7
192,898 + -0.4
192,899 - +0.6
192,907 + +0.1
192,908 - -2.1
193,039 - +0.7
193,071 - -0.3
193,089 + -0.3
193,138 - +0.1
193,149 + +1.9
193,149 + +0.1
193,150 - -1.2
193,150 - -1.9
193,191 - +0.8
193,194 + +1.5
193,223 - +0.2
193,297 + -0.6
193,331 + +0.1
193,349 - +0.1
193,358 - -0.6
193,409 + +1.0
193,409 + +0.0
193,409 + +0.5
193,755 + GFF1009 0.19 +0.8
193,818 + GFF1009 0.23 +0.4
193,818 + GFF1009 0.23 +0.2
193,818 + GFF1009 0.23 +1.0
193,818 + GFF1009 0.23 +0.6
193,819 - GFF1009 0.23 -0.5
193,819 - GFF1009 0.23 -0.1
193,819 - GFF1009 0.23 +0.3
193,823 + GFF1009 0.23 -2.2
193,823 + GFF1009 0.23 +0.3
193,908 + GFF1009 0.29 -0.1
193,932 + GFF1009 0.30 -0.8
193,932 + GFF1009 0.30 -0.4
193,932 + GFF1009 0.30 -0.2
193,932 + GFF1009 0.30 +0.3
193,933 - GFF1009 0.30 +0.8
193,941 + GFF1009 0.31 +1.3
193,942 - GFF1009 0.31 +0.2
193,943 + GFF1009 0.31 +0.2
193,943 + GFF1009 0.31 -0.1
193,943 + GFF1009 0.31 -0.2
193,965 + GFF1009 0.32 -0.8
193,965 + GFF1009 0.32 +0.0

Or see this region's nucleotide sequence