Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2138

Experiment: m.b. acetate 300 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2137 and B158DRAFT_2138 are separated by 123 nucleotidesB158DRAFT_2138 and B158DRAFT_2139 are separated by 89 nucleotides B158DRAFT_2137: B158DRAFT_2137 - prepilin-type N-terminal cleavage/methylation domain, at 271,242 to 271,691 _2137 B158DRAFT_2138: B158DRAFT_2138 - type IV-A pilus assembly ATPase PilB, at 271,815 to 273,527 _2138 B158DRAFT_2139: B158DRAFT_2139 - Type II secretory pathway, component PulF, at 273,617 to 274,867 _2139 Position (kb) 271 272 273 274Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 270.817 kb on + strandat 270.819 kb on + strandat 270.835 kb on + strandat 270.835 kb on + strandat 271.087 kb on + strandat 271.087 kb on + strandat 271.095 kb on - strandat 271.118 kb on + strandat 271.126 kb on - strandat 271.126 kb on - strandat 271.126 kb on - strandat 271.139 kb on + strandat 271.139 kb on + strandat 271.139 kb on + strandat 271.139 kb on + strandat 271.139 kb on + strandat 271.139 kb on + strandat 271.139 kb on + strandat 271.139 kb on + strandat 271.147 kb on - strandat 271.147 kb on - strandat 271.147 kb on - strandat 271.147 kb on - strandat 271.147 kb on - strandat 271.147 kb on - strandat 271.147 kb on - strandat 271.147 kb on - strandat 271.147 kb on - strandat 271.147 kb on - strandat 271.284 kb on + strandat 271.455 kb on - strand, within B158DRAFT_2137at 271.635 kb on - strand, within B158DRAFT_2137at 271.778 kb on + strandat 271.778 kb on + strandat 271.778 kb on + strandat 271.791 kb on + strandat 271.924 kb on + strandat 271.932 kb on - strandat 271.951 kb on + strandat 272.089 kb on - strand, within B158DRAFT_2138at 272.102 kb on + strand, within B158DRAFT_2138at 272.121 kb on - strand, within B158DRAFT_2138at 272.166 kb on - strand, within B158DRAFT_2138at 272.188 kb on + strand, within B158DRAFT_2138at 272.339 kb on + strand, within B158DRAFT_2138at 272.339 kb on + strand, within B158DRAFT_2138at 272.422 kb on - strand, within B158DRAFT_2138at 272.422 kb on - strand, within B158DRAFT_2138at 272.437 kb on + strand, within B158DRAFT_2138at 272.604 kb on - strand, within B158DRAFT_2138at 272.643 kb on + strand, within B158DRAFT_2138at 272.785 kb on - strand, within B158DRAFT_2138at 272.791 kb on - strand, within B158DRAFT_2138at 272.792 kb on + strand, within B158DRAFT_2138at 272.792 kb on - strand, within B158DRAFT_2138at 272.892 kb on - strand, within B158DRAFT_2138at 272.914 kb on + strand, within B158DRAFT_2138at 272.914 kb on + strand, within B158DRAFT_2138at 272.914 kb on + strand, within B158DRAFT_2138at 272.914 kb on + strand, within B158DRAFT_2138at 272.922 kb on - strand, within B158DRAFT_2138at 272.922 kb on - strand, within B158DRAFT_2138at 272.922 kb on - strand, within B158DRAFT_2138at 272.922 kb on - strand, within B158DRAFT_2138at 272.922 kb on - strand, within B158DRAFT_2138at 272.922 kb on - strand, within B158DRAFT_2138at 272.922 kb on - strand, within B158DRAFT_2138at 272.932 kb on - strand, within B158DRAFT_2138at 272.932 kb on - strand, within B158DRAFT_2138at 272.946 kb on + strand, within B158DRAFT_2138at 273.052 kb on - strand, within B158DRAFT_2138at 273.097 kb on - strand, within B158DRAFT_2138at 273.117 kb on - strand, within B158DRAFT_2138at 273.136 kb on - strand, within B158DRAFT_2138at 273.255 kb on + strand, within B158DRAFT_2138at 273.333 kb on + strand, within B158DRAFT_2138at 273.457 kb on + strandat 273.483 kb on + strandat 273.521 kb on + strandat 273.521 kb on + strandat 273.529 kb on - strandat 273.637 kb on - strandat 273.784 kb on + strand, within B158DRAFT_2139at 273.950 kb on + strand, within B158DRAFT_2139at 274.032 kb on + strand, within B158DRAFT_2139at 274.083 kb on - strand, within B158DRAFT_2139at 274.141 kb on - strand, within B158DRAFT_2139at 274.141 kb on - strand, within B158DRAFT_2139at 274.157 kb on + strand, within B158DRAFT_2139at 274.162 kb on + strand, within B158DRAFT_2139at 274.281 kb on + strand, within B158DRAFT_2139at 274.355 kb on + strand, within B158DRAFT_2139at 274.511 kb on + strand, within B158DRAFT_2139

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 300 mM
remove
270,817 + -0.3
270,819 + -0.4
270,835 + -0.0
270,835 + -0.5
271,087 + -1.7
271,087 + -1.7
271,095 - -4.5
271,118 + -0.3
271,126 - -0.7
271,126 - -3.9
271,126 - -3.2
271,139 + -1.3
271,139 + -0.6
271,139 + +0.0
271,139 + -0.7
271,139 + -0.1
271,139 + -1.4
271,139 + -1.9
271,139 + -0.5
271,147 - -2.7
271,147 - -1.6
271,147 - -2.4
271,147 - -4.1
271,147 - -2.7
271,147 - -2.6
271,147 - -3.3
271,147 - -3.6
271,147 - -2.6
271,147 - -2.1
271,284 + -1.1
271,455 - B158DRAFT_2137 0.47 -2.5
271,635 - B158DRAFT_2137 0.87 -3.5
271,778 + +0.4
271,778 + +0.4
271,778 + -0.2
271,791 + +0.1
271,924 + +1.2
271,932 - +0.3
271,951 + +0.6
272,089 - B158DRAFT_2138 0.16 +0.8
272,102 + B158DRAFT_2138 0.17 +0.2
272,121 - B158DRAFT_2138 0.18 +0.7
272,166 - B158DRAFT_2138 0.20 +0.9
272,188 + B158DRAFT_2138 0.22 +0.6
272,339 + B158DRAFT_2138 0.31 +0.2
272,339 + B158DRAFT_2138 0.31 +0.2
272,422 - B158DRAFT_2138 0.35 -1.0
272,422 - B158DRAFT_2138 0.35 +0.1
272,437 + B158DRAFT_2138 0.36 +0.2
272,604 - B158DRAFT_2138 0.46 +1.3
272,643 + B158DRAFT_2138 0.48 +0.5
272,785 - B158DRAFT_2138 0.57 +0.6
272,791 - B158DRAFT_2138 0.57 +0.1
272,792 + B158DRAFT_2138 0.57 +0.7
272,792 - B158DRAFT_2138 0.57 +0.5
272,892 - B158DRAFT_2138 0.63 +0.4
272,914 + B158DRAFT_2138 0.64 +0.4
272,914 + B158DRAFT_2138 0.64 +0.5
272,914 + B158DRAFT_2138 0.64 +0.7
272,914 + B158DRAFT_2138 0.64 +0.2
272,922 - B158DRAFT_2138 0.65 +1.2
272,922 - B158DRAFT_2138 0.65 +0.3
272,922 - B158DRAFT_2138 0.65 +0.4
272,922 - B158DRAFT_2138 0.65 +0.5
272,922 - B158DRAFT_2138 0.65 +0.5
272,922 - B158DRAFT_2138 0.65 +0.1
272,922 - B158DRAFT_2138 0.65 +1.0
272,932 - B158DRAFT_2138 0.65 +0.6
272,932 - B158DRAFT_2138 0.65 +0.8
272,946 + B158DRAFT_2138 0.66 +0.9
273,052 - B158DRAFT_2138 0.72 +1.2
273,097 - B158DRAFT_2138 0.75 +1.2
273,117 - B158DRAFT_2138 0.76 -0.1
273,136 - B158DRAFT_2138 0.77 +0.6
273,255 + B158DRAFT_2138 0.84 +0.7
273,333 + B158DRAFT_2138 0.89 +0.4
273,457 + +0.3
273,483 + +0.6
273,521 + +0.1
273,521 + +2.5
273,529 - +1.2
273,637 - +0.9
273,784 + B158DRAFT_2139 0.13 +0.9
273,950 + B158DRAFT_2139 0.27 +0.5
274,032 + B158DRAFT_2139 0.33 +0.1
274,083 - B158DRAFT_2139 0.37 +0.5
274,141 - B158DRAFT_2139 0.42 +0.2
274,141 - B158DRAFT_2139 0.42 +0.5
274,157 + B158DRAFT_2139 0.43 +0.7
274,162 + B158DRAFT_2139 0.44 +1.0
274,281 + B158DRAFT_2139 0.53 +0.5
274,355 + B158DRAFT_2139 0.59 -0.6
274,511 + B158DRAFT_2139 0.71 +0.6

Or see this region's nucleotide sequence