Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0426

Experiment: m.b. acetate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0425 and B158DRAFT_0426 overlap by 14 nucleotidesB158DRAFT_0426 and B158DRAFT_0427 overlap by 14 nucleotidesB158DRAFT_0427 and B158DRAFT_0428 are separated by 1 nucleotides B158DRAFT_0425: B158DRAFT_0425 - Predicted exporter, at 428,085 to 430,421 _0425 B158DRAFT_0426: B158DRAFT_0426 - Outer membrane lipoprotein carrier protein LolA., at 430,408 to 431,040 _0426 B158DRAFT_0427: B158DRAFT_0427 - Predicted thioesterase, at 431,027 to 431,470 _0427 B158DRAFT_0428: B158DRAFT_0428 - Histidine ammonia-lyase, at 431,472 to 433,016 _0428 Position (kb) 430 431 432Strain fitness (log2 ratio) -1 0 1at 429.433 kb on - strand, within B158DRAFT_0425at 429.533 kb on - strand, within B158DRAFT_0425at 429.535 kb on + strand, within B158DRAFT_0425at 429.623 kb on + strand, within B158DRAFT_0425at 429.623 kb on + strand, within B158DRAFT_0425at 429.797 kb on - strand, within B158DRAFT_0425at 429.803 kb on - strand, within B158DRAFT_0425at 429.836 kb on + strand, within B158DRAFT_0425at 429.839 kb on - strand, within B158DRAFT_0425at 429.865 kb on + strand, within B158DRAFT_0425at 429.875 kb on + strand, within B158DRAFT_0425at 429.900 kb on + strand, within B158DRAFT_0425at 429.909 kb on + strand, within B158DRAFT_0425at 430.017 kb on + strand, within B158DRAFT_0425at 430.033 kb on + strand, within B158DRAFT_0425at 430.038 kb on + strand, within B158DRAFT_0425at 430.038 kb on + strand, within B158DRAFT_0425at 430.038 kb on + strand, within B158DRAFT_0425at 430.038 kb on + strand, within B158DRAFT_0425at 430.038 kb on + strand, within B158DRAFT_0425at 430.038 kb on + strand, within B158DRAFT_0425at 430.091 kb on + strand, within B158DRAFT_0425at 430.129 kb on + strand, within B158DRAFT_0425at 430.173 kb on - strand, within B158DRAFT_0425at 430.233 kb on - strandat 430.233 kb on - strandat 430.266 kb on + strandat 430.392 kb on + strandat 430.497 kb on + strand, within B158DRAFT_0426at 430.574 kb on - strand, within B158DRAFT_0426at 430.591 kb on + strand, within B158DRAFT_0426at 430.612 kb on + strand, within B158DRAFT_0426at 430.612 kb on + strand, within B158DRAFT_0426at 430.612 kb on + strand, within B158DRAFT_0426at 430.612 kb on + strand, within B158DRAFT_0426at 430.612 kb on + strand, within B158DRAFT_0426at 430.612 kb on + strand, within B158DRAFT_0426at 430.620 kb on - strand, within B158DRAFT_0426at 430.620 kb on - strand, within B158DRAFT_0426at 430.620 kb on - strand, within B158DRAFT_0426at 430.620 kb on - strand, within B158DRAFT_0426at 430.752 kb on + strand, within B158DRAFT_0426at 430.752 kb on + strand, within B158DRAFT_0426at 430.760 kb on - strand, within B158DRAFT_0426at 430.844 kb on + strand, within B158DRAFT_0426at 430.923 kb on + strand, within B158DRAFT_0426at 430.923 kb on + strand, within B158DRAFT_0426at 430.951 kb on + strand, within B158DRAFT_0426at 430.959 kb on - strand, within B158DRAFT_0426at 430.959 kb on - strand, within B158DRAFT_0426at 431.037 kb on + strandat 431.106 kb on + strand, within B158DRAFT_0427at 431.130 kb on + strand, within B158DRAFT_0427at 431.130 kb on + strand, within B158DRAFT_0427at 431.138 kb on - strand, within B158DRAFT_0427at 431.138 kb on - strand, within B158DRAFT_0427at 431.141 kb on + strand, within B158DRAFT_0427at 431.149 kb on - strand, within B158DRAFT_0427at 431.159 kb on - strand, within B158DRAFT_0427at 431.208 kb on - strand, within B158DRAFT_0427at 431.208 kb on - strand, within B158DRAFT_0427at 431.208 kb on - strand, within B158DRAFT_0427at 431.303 kb on - strand, within B158DRAFT_0427at 431.333 kb on - strand, within B158DRAFT_0427at 431.335 kb on + strand, within B158DRAFT_0427at 431.350 kb on + strand, within B158DRAFT_0427at 431.357 kb on + strand, within B158DRAFT_0427at 431.357 kb on + strand, within B158DRAFT_0427at 431.357 kb on + strand, within B158DRAFT_0427at 431.365 kb on - strand, within B158DRAFT_0427at 431.367 kb on - strand, within B158DRAFT_0427at 431.421 kb on + strand, within B158DRAFT_0427at 431.428 kb on + strandat 431.428 kb on + strandat 431.436 kb on - strandat 431.436 kb on - strandat 431.436 kb on - strandat 431.449 kb on + strandat 431.476 kb on - strandat 431.482 kb on + strandat 431.545 kb on + strandat 431.545 kb on + strandat 431.549 kb on - strandat 431.549 kb on - strandat 431.553 kb on - strandat 431.553 kb on - strandat 431.553 kb on - strandat 431.553 kb on - strandat 431.614 kb on - strandat 431.640 kb on + strand, within B158DRAFT_0428at 431.640 kb on + strand, within B158DRAFT_0428at 431.640 kb on + strand, within B158DRAFT_0428at 431.648 kb on - strand, within B158DRAFT_0428at 431.751 kb on - strand, within B158DRAFT_0428at 431.810 kb on + strand, within B158DRAFT_0428at 431.816 kb on - strand, within B158DRAFT_0428at 431.818 kb on - strand, within B158DRAFT_0428at 431.843 kb on - strand, within B158DRAFT_0428at 431.845 kb on + strand, within B158DRAFT_0428at 431.853 kb on - strand, within B158DRAFT_0428at 431.853 kb on - strand, within B158DRAFT_0428at 431.906 kb on + strand, within B158DRAFT_0428at 431.965 kb on + strand, within B158DRAFT_0428at 431.973 kb on - strand, within B158DRAFT_0428at 431.973 kb on - strand, within B158DRAFT_0428

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 300 mM
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429,433 - B158DRAFT_0425 0.58 -0.1
429,533 - B158DRAFT_0425 0.62 +0.0
429,535 + B158DRAFT_0425 0.62 +0.0
429,623 + B158DRAFT_0425 0.66 +0.0
429,623 + B158DRAFT_0425 0.66 +0.2
429,797 - B158DRAFT_0425 0.73 +0.1
429,803 - B158DRAFT_0425 0.74 +0.5
429,836 + B158DRAFT_0425 0.75 +0.3
429,839 - B158DRAFT_0425 0.75 +0.5
429,865 + B158DRAFT_0425 0.76 +0.2
429,875 + B158DRAFT_0425 0.77 +0.2
429,900 + B158DRAFT_0425 0.78 +0.1
429,909 + B158DRAFT_0425 0.78 -0.5
430,017 + B158DRAFT_0425 0.83 +0.0
430,033 + B158DRAFT_0425 0.83 +0.1
430,038 + B158DRAFT_0425 0.84 +0.1
430,038 + B158DRAFT_0425 0.84 +0.8
430,038 + B158DRAFT_0425 0.84 +0.1
430,038 + B158DRAFT_0425 0.84 +0.5
430,038 + B158DRAFT_0425 0.84 +0.2
430,038 + B158DRAFT_0425 0.84 +0.3
430,091 + B158DRAFT_0425 0.86 -1.6
430,129 + B158DRAFT_0425 0.87 +1.1
430,173 - B158DRAFT_0425 0.89 +0.9
430,233 - +0.5
430,233 - +0.3
430,266 + +0.3
430,392 + +0.5
430,497 + B158DRAFT_0426 0.14 +0.8
430,574 - B158DRAFT_0426 0.26 +0.4
430,591 + B158DRAFT_0426 0.29 -0.5
430,612 + B158DRAFT_0426 0.32 +0.3
430,612 + B158DRAFT_0426 0.32 +0.1
430,612 + B158DRAFT_0426 0.32 +0.2
430,612 + B158DRAFT_0426 0.32 +0.2
430,612 + B158DRAFT_0426 0.32 -0.1
430,612 + B158DRAFT_0426 0.32 +0.1
430,620 - B158DRAFT_0426 0.33 +0.5
430,620 - B158DRAFT_0426 0.33 +1.1
430,620 - B158DRAFT_0426 0.33 +1.2
430,620 - B158DRAFT_0426 0.33 +0.3
430,752 + B158DRAFT_0426 0.54 -0.0
430,752 + B158DRAFT_0426 0.54 +0.6
430,760 - B158DRAFT_0426 0.56 +0.2
430,844 + B158DRAFT_0426 0.69 +0.5
430,923 + B158DRAFT_0426 0.81 +0.4
430,923 + B158DRAFT_0426 0.81 +0.3
430,951 + B158DRAFT_0426 0.86 +0.0
430,959 - B158DRAFT_0426 0.87 -0.0
430,959 - B158DRAFT_0426 0.87 +0.3
431,037 + +0.2
431,106 + B158DRAFT_0427 0.18 -0.2
431,130 + B158DRAFT_0427 0.23 -0.1
431,130 + B158DRAFT_0427 0.23 -0.0
431,138 - B158DRAFT_0427 0.25 -0.1
431,138 - B158DRAFT_0427 0.25 -0.3
431,141 + B158DRAFT_0427 0.26 -0.0
431,149 - B158DRAFT_0427 0.27 -0.0
431,159 - B158DRAFT_0427 0.30 -0.4
431,208 - B158DRAFT_0427 0.41 -0.4
431,208 - B158DRAFT_0427 0.41 -0.3
431,208 - B158DRAFT_0427 0.41 -0.3
431,303 - B158DRAFT_0427 0.62 -0.4
431,333 - B158DRAFT_0427 0.69 +0.5
431,335 + B158DRAFT_0427 0.69 -0.3
431,350 + B158DRAFT_0427 0.73 -0.2
431,357 + B158DRAFT_0427 0.74 -0.3
431,357 + B158DRAFT_0427 0.74 -0.0
431,357 + B158DRAFT_0427 0.74 +0.1
431,365 - B158DRAFT_0427 0.76 -0.2
431,367 - B158DRAFT_0427 0.77 -0.0
431,421 + B158DRAFT_0427 0.89 -0.2
431,428 + -0.2
431,428 + +0.2
431,436 - -0.6
431,436 - -0.4
431,436 - -0.0
431,449 + -0.5
431,476 - -0.2
431,482 + +0.3
431,545 + -0.4
431,545 + +0.3
431,549 - -0.1
431,549 - -0.1
431,553 - -0.3
431,553 - -0.2
431,553 - +0.3
431,553 - -0.5
431,614 - -0.4
431,640 + B158DRAFT_0428 0.11 -0.0
431,640 + B158DRAFT_0428 0.11 -0.1
431,640 + B158DRAFT_0428 0.11 -0.5
431,648 - B158DRAFT_0428 0.11 -0.6
431,751 - B158DRAFT_0428 0.18 -0.3
431,810 + B158DRAFT_0428 0.22 -0.3
431,816 - B158DRAFT_0428 0.22 -0.3
431,818 - B158DRAFT_0428 0.22 -0.1
431,843 - B158DRAFT_0428 0.24 -0.1
431,845 + B158DRAFT_0428 0.24 -0.1
431,853 - B158DRAFT_0428 0.25 -0.5
431,853 - B158DRAFT_0428 0.25 +0.0
431,906 + B158DRAFT_0428 0.28 -0.6
431,965 + B158DRAFT_0428 0.32 +0.1
431,973 - B158DRAFT_0428 0.32 -0.0
431,973 - B158DRAFT_0428 0.32 -0.2

Or see this region's nucleotide sequence