Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4515

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4514 and PfGW456L13_4515 are separated by 8 nucleotidesPfGW456L13_4515 and PfGW456L13_4516 are separated by 31 nucleotides PfGW456L13_4514 - Sigma factor RpoE negative regulatory protein RseB precursor, at 5,047,188 to 5,048,147 _4514 PfGW456L13_4515 - Sigma factor RpoE negative regulatory protein RseA, at 5,048,156 to 5,048,743 _4515 PfGW456L13_4516 - RNA polymerase sigma-H factor AlgT, at 5,048,775 to 5,049,356 _4516 Position (kb) 5048 5049Strain fitness (log2 ratio) -2 -1 0 1at 5047.245 kb on - strandat 5047.254 kb on + strandat 5047.338 kb on - strand, within PfGW456L13_4514at 5047.408 kb on + strand, within PfGW456L13_4514at 5047.408 kb on + strand, within PfGW456L13_4514at 5047.408 kb on + strand, within PfGW456L13_4514at 5047.408 kb on + strand, within PfGW456L13_4514at 5047.408 kb on + strand, within PfGW456L13_4514at 5047.409 kb on - strand, within PfGW456L13_4514at 5047.409 kb on - strand, within PfGW456L13_4514at 5047.409 kb on - strand, within PfGW456L13_4514at 5047.409 kb on - strand, within PfGW456L13_4514at 5047.409 kb on - strand, within PfGW456L13_4514at 5047.418 kb on + strand, within PfGW456L13_4514at 5047.565 kb on + strand, within PfGW456L13_4514at 5047.566 kb on - strand, within PfGW456L13_4514at 5047.796 kb on - strand, within PfGW456L13_4514at 5047.982 kb on + strand, within PfGW456L13_4514at 5047.983 kb on - strand, within PfGW456L13_4514at 5047.998 kb on - strand, within PfGW456L13_4514at 5048.003 kb on + strand, within PfGW456L13_4514at 5048.012 kb on - strand, within PfGW456L13_4514at 5048.021 kb on + strand, within PfGW456L13_4514at 5048.021 kb on + strand, within PfGW456L13_4514at 5048.022 kb on - strand, within PfGW456L13_4514at 5048.130 kb on + strandat 5048.137 kb on - strandat 5048.137 kb on - strandat 5048.137 kb on - strandat 5048.431 kb on - strand, within PfGW456L13_4515at 5048.777 kb on - strandat 5048.888 kb on - strand, within PfGW456L13_4516at 5048.888 kb on - strand, within PfGW456L13_4516at 5048.888 kb on - strand, within PfGW456L13_4516at 5048.910 kb on + strand, within PfGW456L13_4516at 5048.911 kb on - strand, within PfGW456L13_4516at 5048.911 kb on - strand, within PfGW456L13_4516at 5048.911 kb on - strand, within PfGW456L13_4516at 5048.916 kb on + strand, within PfGW456L13_4516at 5049.037 kb on + strand, within PfGW456L13_4516at 5049.038 kb on - strand, within PfGW456L13_4516at 5049.038 kb on - strandat 5049.038 kb on - strand, within PfGW456L13_4516at 5049.038 kb on - strand, within PfGW456L13_4516at 5049.038 kb on - strand, within PfGW456L13_4516at 5049.140 kb on + strand, within PfGW456L13_4516at 5049.141 kb on - strand, within PfGW456L13_4516at 5049.141 kb on - strand, within PfGW456L13_4516at 5049.143 kb on - strand, within PfGW456L13_4516at 5049.143 kb on - strand, within PfGW456L13_4516at 5049.143 kb on - strand, within PfGW456L13_4516at 5049.182 kb on - strand, within PfGW456L13_4516at 5049.191 kb on + strand, within PfGW456L13_4516at 5049.272 kb on - strand, within PfGW456L13_4516at 5049.272 kb on - strand, within PfGW456L13_4516at 5049.272 kb on - strand, within PfGW456L13_4516at 5049.272 kb on - strand, within PfGW456L13_4516at 5049.282 kb on + strand, within PfGW456L13_4516at 5049.283 kb on - strand, within PfGW456L13_4516at 5049.283 kb on - strand, within PfGW456L13_4516at 5049.283 kb on - strand, within PfGW456L13_4516at 5049.395 kb on + strandat 5049.396 kb on - strandat 5049.417 kb on + strandat 5049.418 kb on - strandat 5049.418 kb on - strandat 5049.608 kb on + strandat 5049.641 kb on + strandat 5049.641 kb on + strandat 5049.642 kb on - strandat 5049.642 kb on - strandat 5049.642 kb on - strandat 5049.645 kb on + strandat 5049.645 kb on + strandat 5049.646 kb on - strandat 5049.647 kb on + strandat 5049.695 kb on + strandat 5049.696 kb on - strandat 5049.696 kb on - strandat 5049.696 kb on - strandat 5049.707 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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5,047,245 - -1.7
5,047,254 + +0.6
5,047,338 - PfGW456L13_4514 0.16 -0.7
5,047,408 + PfGW456L13_4514 0.23 -0.8
5,047,408 + PfGW456L13_4514 0.23 -1.4
5,047,408 + PfGW456L13_4514 0.23 -0.6
5,047,408 + PfGW456L13_4514 0.23 -1.0
5,047,408 + PfGW456L13_4514 0.23 -0.4
5,047,409 - PfGW456L13_4514 0.23 -1.0
5,047,409 - PfGW456L13_4514 0.23 -0.0
5,047,409 - PfGW456L13_4514 0.23 -1.4
5,047,409 - PfGW456L13_4514 0.23 -1.1
5,047,409 - PfGW456L13_4514 0.23 -0.0
5,047,418 + PfGW456L13_4514 0.24 +0.8
5,047,565 + PfGW456L13_4514 0.39 +1.0
5,047,566 - PfGW456L13_4514 0.39 -1.0
5,047,796 - PfGW456L13_4514 0.63 -0.5
5,047,982 + PfGW456L13_4514 0.83 -0.4
5,047,983 - PfGW456L13_4514 0.83 -1.7
5,047,998 - PfGW456L13_4514 0.84 -0.9
5,048,003 + PfGW456L13_4514 0.85 +0.8
5,048,012 - PfGW456L13_4514 0.86 -0.6
5,048,021 + PfGW456L13_4514 0.87 -0.3
5,048,021 + PfGW456L13_4514 0.87 -0.5
5,048,022 - PfGW456L13_4514 0.87 -1.2
5,048,130 + +0.7
5,048,137 - -0.4
5,048,137 - +0.6
5,048,137 - -0.0
5,048,431 - PfGW456L13_4515 0.47 +1.0
5,048,777 - +0.5
5,048,888 - PfGW456L13_4516 0.19 -0.2
5,048,888 - PfGW456L13_4516 0.19 -0.7
5,048,888 - PfGW456L13_4516 0.19 -0.7
5,048,910 + PfGW456L13_4516 0.23 -1.0
5,048,911 - PfGW456L13_4516 0.23 -1.3
5,048,911 - PfGW456L13_4516 0.23 -0.2
5,048,911 - PfGW456L13_4516 0.23 +0.4
5,048,916 + PfGW456L13_4516 0.24 -0.3
5,049,037 + PfGW456L13_4516 0.45 +0.6
5,049,038 - PfGW456L13_4516 0.45 -0.7
5,049,038 - -0.3
5,049,038 - PfGW456L13_4516 0.45 -0.0
5,049,038 - PfGW456L13_4516 0.45 -2.5
5,049,038 - PfGW456L13_4516 0.45 -1.3
5,049,140 + PfGW456L13_4516 0.63 -0.0
5,049,141 - PfGW456L13_4516 0.63 -0.7
5,049,141 - PfGW456L13_4516 0.63 +0.3
5,049,143 - PfGW456L13_4516 0.63 -0.9
5,049,143 - PfGW456L13_4516 0.63 -0.7
5,049,143 - PfGW456L13_4516 0.63 +0.9
5,049,182 - PfGW456L13_4516 0.70 -0.0
5,049,191 + PfGW456L13_4516 0.71 -1.0
5,049,272 - PfGW456L13_4516 0.85 -0.1
5,049,272 - PfGW456L13_4516 0.85 -1.3
5,049,272 - PfGW456L13_4516 0.85 -0.2
5,049,272 - PfGW456L13_4516 0.85 +0.2
5,049,282 + PfGW456L13_4516 0.87 -0.3
5,049,283 - PfGW456L13_4516 0.87 +0.1
5,049,283 - PfGW456L13_4516 0.87 +0.1
5,049,283 - PfGW456L13_4516 0.87 -0.2
5,049,395 + -1.3
5,049,396 - +0.2
5,049,417 + +0.1
5,049,418 - +0.1
5,049,418 - -1.3
5,049,608 + -0.1
5,049,641 + -0.7
5,049,641 + -0.9
5,049,642 - -0.3
5,049,642 - -0.9
5,049,642 - -1.2
5,049,645 + -0.2
5,049,645 + +1.4
5,049,646 - +0.1
5,049,647 + +0.1
5,049,695 + -0.2
5,049,696 - -1.0
5,049,696 - -1.4
5,049,696 - +0.2
5,049,707 - +0.4

Or see this region's nucleotide sequence