Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2529

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2527 and GFF2528 are separated by 45 nucleotidesGFF2528 and GFF2529 are separated by 58 nucleotidesGFF2529 and GFF2530 overlap by 26 nucleotides GFF2527 - Choloylglycine hydrolase (EC 3.5.1.24), at 40,950 to 42,041 GFF2527 GFF2528 - Hexuronate utilization operon transcriptional repressor ExuR, at 42,087 to 42,878 GFF2528 GFF2529 - L-galactonate dehydrogenase (EC 1.1.1.-), at 42,937 to 43,962 GFF2529 GFF2530 - putative transport protein, at 43,937 to 45,223 GFF2530 Position (kb) 42 43 44Strain fitness (log2 ratio) -2 -1 0 1 2at 41.969 kb on + strandat 42.215 kb on - strand, within GFF2528at 42.282 kb on - strand, within GFF2528at 42.686 kb on + strand, within GFF2528at 42.707 kb on + strand, within GFF2528at 42.717 kb on + strand, within GFF2528at 42.762 kb on - strand, within GFF2528at 42.954 kb on + strandat 43.071 kb on + strand, within GFF2529at 43.133 kb on + strand, within GFF2529at 43.134 kb on - strand, within GFF2529at 43.255 kb on + strand, within GFF2529at 43.334 kb on + strand, within GFF2529at 43.334 kb on + strand, within GFF2529at 43.358 kb on + strand, within GFF2529at 43.467 kb on - strand, within GFF2529at 43.467 kb on - strand, within GFF2529at 44.047 kb on - strandat 44.148 kb on - strand, within GFF2530at 44.503 kb on - strand, within GFF2530at 44.557 kb on - strand, within GFF2530at 44.677 kb on + strand, within GFF2530at 44.693 kb on + strand, within GFF2530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
remove
41,969 + -0.3
42,215 - GFF2528 0.16 +0.3
42,282 - GFF2528 0.25 -0.0
42,686 + GFF2528 0.76 -1.7
42,707 + GFF2528 0.78 -0.0
42,717 + GFF2528 0.80 -0.4
42,762 - GFF2528 0.85 +0.4
42,954 + +1.1
43,071 + GFF2529 0.13 -0.3
43,133 + GFF2529 0.19 -1.0
43,134 - GFF2529 0.19 -1.9
43,255 + GFF2529 0.31 -0.9
43,334 + GFF2529 0.39 +0.3
43,334 + GFF2529 0.39 -0.6
43,358 + GFF2529 0.41 -0.0
43,467 - GFF2529 0.52 -0.6
43,467 - GFF2529 0.52 -0.3
44,047 - +1.1
44,148 - GFF2530 0.16 -0.7
44,503 - GFF2530 0.44 +0.3
44,557 - GFF2530 0.48 -0.4
44,677 + GFF2530 0.57 +1.4
44,693 + GFF2530 0.59 +2.5

Or see this region's nucleotide sequence