Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1684

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1683 and GFF1684 are separated by 74 nucleotidesGFF1684 and GFF1685 are separated by 237 nucleotidesGFF1685 and GFF1686 are separated by 212 nucleotides GFF1683 - Tyrosine-specific transport protein, at 66,764 to 68,032 GFF1683 GFF1684 - FIG00637942: hypothetical protein, at 68,107 to 68,772 GFF1684 GFF1685 - FIG01045540: hypothetical protein, at 69,010 to 69,336 GFF1685 GFF1686 - FIG01200701: possible membrane protein, at 69,549 to 70,982 GFF1686 Position (kb) 68 69Strain fitness (log2 ratio) -1 0 1at 67.150 kb on + strand, within GFF1683at 67.506 kb on - strand, within GFF1683at 67.771 kb on + strand, within GFF1683at 68.200 kb on + strand, within GFF1684at 68.495 kb on + strand, within GFF1684at 68.588 kb on + strand, within GFF1684at 68.712 kb on - strandat 68.804 kb on + strandat 68.993 kb on - strandat 69.033 kb on - strandat 69.091 kb on + strand, within GFF1685at 69.219 kb on - strand, within GFF1685at 69.322 kb on - strandat 69.393 kb on + strandat 69.491 kb on + strandat 69.493 kb on + strandat 69.559 kb on + strandat 69.666 kb on - strandat 69.668 kb on + strandat 69.668 kb on + strandat 69.749 kb on - strand, within GFF1686

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
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67,150 + GFF1683 0.30 -0.8
67,506 - GFF1683 0.58 +0.0
67,771 + GFF1683 0.79 +0.5
68,200 + GFF1684 0.14 +0.0
68,495 + GFF1684 0.58 +0.9
68,588 + GFF1684 0.72 +0.4
68,712 - +1.6
68,804 + +0.6
68,993 - +0.0
69,033 - -0.2
69,091 + GFF1685 0.25 +1.0
69,219 - GFF1685 0.64 +0.2
69,322 - -0.5
69,393 + +0.0
69,491 + +0.9
69,493 + +0.5
69,559 + +1.4
69,666 - -0.1
69,668 + -0.2
69,668 + +0.4
69,749 - GFF1686 0.14 -0.2

Or see this region's nucleotide sequence