Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2406

Experiment: nitrate (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2405 and Echvi_2406 are separated by 488 nucleotidesEchvi_2406 and Echvi_2407 are separated by 225 nucleotides Echvi_2405: Echvi_2405 - Periplasmic protease, at 2,846,789 to 2,848,249 _2405 Echvi_2406: Echvi_2406 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 2,848,738 to 2,849,871 _2406 Echvi_2407: Echvi_2407 - Protein of unknown function (DUF3050)., at 2,850,097 to 2,850,879 _2407 Position (kb) 2848 2849 2850Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2847.759 kb on + strand, within Echvi_2405at 2847.760 kb on - strand, within Echvi_2405at 2847.773 kb on + strand, within Echvi_2405at 2847.853 kb on - strand, within Echvi_2405at 2847.869 kb on + strand, within Echvi_2405at 2847.960 kb on + strand, within Echvi_2405at 2847.970 kb on - strand, within Echvi_2405at 2847.996 kb on - strand, within Echvi_2405at 2848.015 kb on - strand, within Echvi_2405at 2848.057 kb on + strand, within Echvi_2405at 2848.057 kb on + strand, within Echvi_2405at 2848.106 kb on - strandat 2848.129 kb on + strandat 2848.194 kb on - strandat 2848.209 kb on - strandat 2848.209 kb on - strandat 2848.209 kb on - strandat 2848.209 kb on - strandat 2848.212 kb on - strandat 2848.220 kb on + strandat 2848.231 kb on - strandat 2848.231 kb on - strandat 2848.231 kb on - strandat 2848.269 kb on + strandat 2848.283 kb on + strandat 2848.284 kb on - strandat 2848.284 kb on - strandat 2848.303 kb on + strandat 2848.304 kb on - strandat 2848.304 kb on - strandat 2848.305 kb on + strandat 2848.305 kb on + strandat 2848.306 kb on - strandat 2848.313 kb on - strandat 2848.314 kb on + strandat 2848.314 kb on + strandat 2848.315 kb on - strandat 2848.321 kb on - strandat 2848.321 kb on - strandat 2848.325 kb on + strandat 2848.325 kb on + strandat 2848.326 kb on - strandat 2848.326 kb on - strandat 2848.326 kb on - strandat 2848.326 kb on - strandat 2848.329 kb on - strandat 2848.330 kb on + strandat 2848.330 kb on + strandat 2848.377 kb on + strandat 2848.380 kb on + strandat 2848.381 kb on - strandat 2848.381 kb on - strandat 2848.381 kb on - strandat 2848.391 kb on - strandat 2848.392 kb on + strandat 2848.473 kb on + strandat 2848.473 kb on + strandat 2848.473 kb on + strandat 2848.473 kb on + strandat 2848.474 kb on - strandat 2848.474 kb on - strandat 2848.474 kb on - strandat 2848.476 kb on + strandat 2848.508 kb on + strandat 2848.566 kb on + strandat 2848.567 kb on - strandat 2848.569 kb on + strandat 2848.569 kb on + strandat 2848.570 kb on - strandat 2848.570 kb on - strandat 2848.570 kb on - strandat 2848.589 kb on - strandat 2848.614 kb on + strandat 2848.675 kb on + strandat 2848.676 kb on - strandat 2848.676 kb on - strandat 2848.676 kb on - strandat 2848.676 kb on - strandat 2848.676 kb on - strandat 2848.692 kb on + strandat 2848.692 kb on + strandat 2848.696 kb on + strandat 2848.696 kb on + strandat 2848.697 kb on - strandat 2848.723 kb on + strandat 2848.724 kb on - strandat 2848.726 kb on + strandat 2848.727 kb on - strandat 2848.741 kb on + strandat 2848.741 kb on + strandat 2848.741 kb on + strandat 2848.741 kb on + strandat 2848.741 kb on + strandat 2848.742 kb on - strandat 2848.742 kb on - strandat 2848.743 kb on + strandat 2848.743 kb on + strandat 2848.743 kb on + strandat 2848.743 kb on + strandat 2848.744 kb on - strandat 2848.744 kb on - strandat 2848.787 kb on + strandat 2848.790 kb on + strandat 2848.807 kb on - strandat 2848.815 kb on - strandat 2848.815 kb on - strandat 2848.914 kb on - strand, within Echvi_2406at 2848.914 kb on - strand, within Echvi_2406at 2849.088 kb on + strand, within Echvi_2406at 2849.124 kb on - strand, within Echvi_2406at 2849.149 kb on + strand, within Echvi_2406at 2849.150 kb on - strand, within Echvi_2406at 2849.172 kb on - strand, within Echvi_2406at 2849.172 kb on - strand, within Echvi_2406at 2849.175 kb on - strand, within Echvi_2406at 2849.175 kb on - strand, within Echvi_2406at 2849.181 kb on + strand, within Echvi_2406at 2849.181 kb on + strand, within Echvi_2406at 2849.181 kb on + strand, within Echvi_2406at 2849.181 kb on + strand, within Echvi_2406at 2849.182 kb on - strand, within Echvi_2406at 2849.220 kb on - strand, within Echvi_2406at 2849.287 kb on - strand, within Echvi_2406at 2849.291 kb on - strand, within Echvi_2406at 2849.291 kb on - strand, within Echvi_2406at 2849.334 kb on + strand, within Echvi_2406at 2849.335 kb on - strand, within Echvi_2406at 2849.335 kb on - strand, within Echvi_2406at 2849.339 kb on + strand, within Echvi_2406at 2849.340 kb on - strand, within Echvi_2406at 2849.342 kb on - strand, within Echvi_2406at 2849.342 kb on - strand, within Echvi_2406at 2849.342 kb on - strandat 2849.343 kb on + strand, within Echvi_2406at 2849.343 kb on + strand, within Echvi_2406at 2849.343 kb on + strand, within Echvi_2406at 2849.344 kb on - strand, within Echvi_2406at 2849.344 kb on - strand, within Echvi_2406at 2849.344 kb on - strand, within Echvi_2406at 2849.344 kb on - strand, within Echvi_2406at 2849.344 kb on - strand, within Echvi_2406at 2849.400 kb on + strand, within Echvi_2406at 2849.400 kb on + strand, within Echvi_2406at 2849.403 kb on - strand, within Echvi_2406at 2849.405 kb on + strand, within Echvi_2406at 2849.467 kb on - strand, within Echvi_2406at 2849.594 kb on + strand, within Echvi_2406at 2849.594 kb on + strand, within Echvi_2406at 2849.594 kb on + strand, within Echvi_2406at 2849.595 kb on - strand, within Echvi_2406at 2849.595 kb on - strand, within Echvi_2406at 2849.595 kb on - strand, within Echvi_2406at 2849.610 kb on - strand, within Echvi_2406at 2849.636 kb on + strand, within Echvi_2406at 2849.636 kb on + strand, within Echvi_2406at 2849.636 kb on + strand, within Echvi_2406at 2849.658 kb on + strand, within Echvi_2406at 2849.672 kb on + strand, within Echvi_2406at 2849.739 kb on - strand, within Echvi_2406at 2849.739 kb on - strand, within Echvi_2406at 2849.813 kb on + strandat 2849.870 kb on - strandat 2849.939 kb on + strandat 2849.940 kb on - strandat 2849.983 kb on + strandat 2849.984 kb on - strandat 2850.004 kb on + strandat 2850.005 kb on - strandat 2850.005 kb on - strandat 2850.005 kb on - strandat 2850.005 kb on - strandat 2850.007 kb on + strandat 2850.007 kb on + strandat 2850.007 kb on + strandat 2850.008 kb on - strandat 2850.008 kb on - strandat 2850.046 kb on + strandat 2850.098 kb on + strandat 2850.099 kb on - strandat 2850.103 kb on + strandat 2850.276 kb on + strand, within Echvi_2407at 2850.276 kb on + strand, within Echvi_2407at 2850.291 kb on - strand, within Echvi_2407at 2850.291 kb on - strand, within Echvi_2407at 2850.291 kb on - strand, within Echvi_2407at 2850.293 kb on + strand, within Echvi_2407at 2850.463 kb on + strand, within Echvi_2407at 2850.463 kb on + strand, within Echvi_2407at 2850.464 kb on - strand, within Echvi_2407at 2850.546 kb on + strand, within Echvi_2407at 2850.546 kb on + strand, within Echvi_2407at 2850.579 kb on - strand, within Echvi_2407at 2850.616 kb on + strand, within Echvi_2407at 2850.616 kb on + strand, within Echvi_2407at 2850.638 kb on - strand, within Echvi_2407at 2850.705 kb on + strand, within Echvi_2407at 2850.706 kb on - strand, within Echvi_2407at 2850.738 kb on + strand, within Echvi_2407at 2850.791 kb on - strand, within Echvi_2407at 2850.799 kb on + strand, within Echvi_2407at 2850.799 kb on + strandat 2850.799 kb on + strand, within Echvi_2407at 2850.800 kb on - strand, within Echvi_2407at 2850.810 kb on - strandat 2850.811 kb on + strandat 2850.811 kb on + strandat 2850.831 kb on + strandat 2850.831 kb on + strandat 2850.831 kb on + strandat 2850.832 kb on - strandat 2850.869 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
remove
2,847,759 + Echvi_2405 0.66 -1.1
2,847,760 - Echvi_2405 0.66 +0.5
2,847,773 + Echvi_2405 0.67 -0.1
2,847,853 - Echvi_2405 0.73 +0.5
2,847,869 + Echvi_2405 0.74 +2.3
2,847,960 + Echvi_2405 0.80 +0.6
2,847,970 - Echvi_2405 0.81 +0.8
2,847,996 - Echvi_2405 0.83 -0.2
2,848,015 - Echvi_2405 0.84 +0.4
2,848,057 + Echvi_2405 0.87 -0.1
2,848,057 + Echvi_2405 0.87 -2.1
2,848,106 - +0.7
2,848,129 + -1.1
2,848,194 - -0.5
2,848,209 - +0.4
2,848,209 - +0.7
2,848,209 - +0.2
2,848,209 - -2.1
2,848,212 - -1.3
2,848,220 + +0.2
2,848,231 - -0.4
2,848,231 - -0.4
2,848,231 - +1.1
2,848,269 + +1.0
2,848,283 + -0.4
2,848,284 - +0.5
2,848,284 - +1.2
2,848,303 + -0.6
2,848,304 - +0.0
2,848,304 - +0.5
2,848,305 + +0.9
2,848,305 + +0.5
2,848,306 - +0.6
2,848,313 - +0.0
2,848,314 + -1.3
2,848,314 + +0.7
2,848,315 - +0.0
2,848,321 - +2.0
2,848,321 - +0.7
2,848,325 + +0.2
2,848,325 + -1.5
2,848,326 - +0.0
2,848,326 - -1.2
2,848,326 - +0.5
2,848,326 - -2.5
2,848,329 - +0.2
2,848,330 + +1.5
2,848,330 + -0.4
2,848,377 + +0.7
2,848,380 + -1.3
2,848,381 - +0.2
2,848,381 - +0.2
2,848,381 - +0.0
2,848,391 - +0.0
2,848,392 + -1.0
2,848,473 + -0.8
2,848,473 + -0.1
2,848,473 + +1.8
2,848,473 + +1.3
2,848,474 - +0.3
2,848,474 - -0.3
2,848,474 - -0.1
2,848,476 + +1.7
2,848,508 + -3.0
2,848,566 + +0.3
2,848,567 - -1.0
2,848,569 + -1.0
2,848,569 + +1.4
2,848,570 - -0.4
2,848,570 - +0.6
2,848,570 - -1.2
2,848,589 - -0.7
2,848,614 + +0.6
2,848,675 + -1.3
2,848,676 - -0.8
2,848,676 - +1.0
2,848,676 - -1.2
2,848,676 - -1.2
2,848,676 - +0.4
2,848,692 + +1.1
2,848,692 + +0.4
2,848,696 + -1.6
2,848,696 + +0.8
2,848,697 - -0.8
2,848,723 + +0.2
2,848,724 - -0.1
2,848,726 + +0.3
2,848,727 - +0.3
2,848,741 + +0.2
2,848,741 + +1.0
2,848,741 + -0.2
2,848,741 + +0.0
2,848,741 + -2.6
2,848,742 - -0.2
2,848,742 - -0.5
2,848,743 + +1.3
2,848,743 + +0.5
2,848,743 + -0.6
2,848,743 + -0.3
2,848,744 - -0.1
2,848,744 - -0.8
2,848,787 + +0.4
2,848,790 + -0.4
2,848,807 - +0.2
2,848,815 - -1.8
2,848,815 - +0.3
2,848,914 - Echvi_2406 0.16 +0.3
2,848,914 - Echvi_2406 0.16 +1.2
2,849,088 + Echvi_2406 0.31 +0.0
2,849,124 - Echvi_2406 0.34 -0.0
2,849,149 + Echvi_2406 0.36 -0.2
2,849,150 - Echvi_2406 0.36 +2.1
2,849,172 - Echvi_2406 0.38 -0.4
2,849,172 - Echvi_2406 0.38 -0.1
2,849,175 - Echvi_2406 0.39 +0.6
2,849,175 - Echvi_2406 0.39 -0.3
2,849,181 + Echvi_2406 0.39 -1.8
2,849,181 + Echvi_2406 0.39 -0.3
2,849,181 + Echvi_2406 0.39 -1.5
2,849,181 + Echvi_2406 0.39 -0.3
2,849,182 - Echvi_2406 0.39 +0.1
2,849,220 - Echvi_2406 0.43 -0.4
2,849,287 - Echvi_2406 0.48 -0.5
2,849,291 - Echvi_2406 0.49 -0.1
2,849,291 - Echvi_2406 0.49 +0.7
2,849,334 + Echvi_2406 0.53 -0.2
2,849,335 - Echvi_2406 0.53 +0.6
2,849,335 - Echvi_2406 0.53 +0.4
2,849,339 + Echvi_2406 0.53 -0.4
2,849,340 - Echvi_2406 0.53 +0.3
2,849,342 - Echvi_2406 0.53 +1.9
2,849,342 - Echvi_2406 0.53 -2.0
2,849,342 - +3.0
2,849,343 + Echvi_2406 0.53 -1.3
2,849,343 + Echvi_2406 0.53 -0.2
2,849,343 + Echvi_2406 0.53 -2.0
2,849,344 - Echvi_2406 0.53 -0.3
2,849,344 - Echvi_2406 0.53 -0.3
2,849,344 - Echvi_2406 0.53 -0.6
2,849,344 - Echvi_2406 0.53 -2.3
2,849,344 - Echvi_2406 0.53 +0.2
2,849,400 + Echvi_2406 0.58 -0.2
2,849,400 + Echvi_2406 0.58 -0.3
2,849,403 - Echvi_2406 0.59 -0.9
2,849,405 + Echvi_2406 0.59 -1.5
2,849,467 - Echvi_2406 0.64 -1.7
2,849,594 + Echvi_2406 0.75 -0.8
2,849,594 + Echvi_2406 0.75 -0.8
2,849,594 + Echvi_2406 0.75 -0.1
2,849,595 - Echvi_2406 0.76 +1.7
2,849,595 - Echvi_2406 0.76 -0.1
2,849,595 - Echvi_2406 0.76 -0.4
2,849,610 - Echvi_2406 0.77 -0.4
2,849,636 + Echvi_2406 0.79 +0.3
2,849,636 + Echvi_2406 0.79 -1.0
2,849,636 + Echvi_2406 0.79 -0.6
2,849,658 + Echvi_2406 0.81 +1.1
2,849,672 + Echvi_2406 0.82 -1.7
2,849,739 - Echvi_2406 0.88 +0.5
2,849,739 - Echvi_2406 0.88 +0.4
2,849,813 + +1.2
2,849,870 - -1.1
2,849,939 + +0.7
2,849,940 - +0.6
2,849,983 + -0.3
2,849,984 - +0.8
2,850,004 + -2.2
2,850,005 - +0.6
2,850,005 - +0.0
2,850,005 - -1.0
2,850,005 - -0.7
2,850,007 + +0.1
2,850,007 + -0.6
2,850,007 + -2.0
2,850,008 - -1.1
2,850,008 - +0.0
2,850,046 + -0.4
2,850,098 + -0.2
2,850,099 - -0.1
2,850,103 + -0.2
2,850,276 + Echvi_2407 0.23 +1.6
2,850,276 + Echvi_2407 0.23 -2.7
2,850,291 - Echvi_2407 0.25 -0.8
2,850,291 - Echvi_2407 0.25 +1.5
2,850,291 - Echvi_2407 0.25 -1.9
2,850,293 + Echvi_2407 0.25 +0.9
2,850,463 + Echvi_2407 0.47 -1.9
2,850,463 + Echvi_2407 0.47 +0.4
2,850,464 - Echvi_2407 0.47 +1.3
2,850,546 + Echvi_2407 0.57 -1.0
2,850,546 + Echvi_2407 0.57 -0.1
2,850,579 - Echvi_2407 0.62 +0.3
2,850,616 + Echvi_2407 0.66 -3.4
2,850,616 + Echvi_2407 0.66 -0.9
2,850,638 - Echvi_2407 0.69 -1.9
2,850,705 + Echvi_2407 0.78 -0.9
2,850,706 - Echvi_2407 0.78 +1.4
2,850,738 + Echvi_2407 0.82 +0.2
2,850,791 - Echvi_2407 0.89 -1.5
2,850,799 + Echvi_2407 0.90 +0.3
2,850,799 + +1.2
2,850,799 + Echvi_2407 0.90 +0.2
2,850,800 - Echvi_2407 0.90 +0.1
2,850,810 - -0.3
2,850,811 + -1.6
2,850,811 + +1.2
2,850,831 + -1.1
2,850,831 + -0.2
2,850,831 + +0.2
2,850,832 - +1.1
2,850,869 - +0.6

Or see this region's nucleotide sequence