Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2405 and Echvi_2406 are separated by 488 nucleotides Echvi_2406 and Echvi_2407 are separated by 225 nucleotides
Echvi_2405: Echvi_2405 - Periplasmic protease, at 2,846,789 to 2,848,249
_2405
Echvi_2406: Echvi_2406 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 2,848,738 to 2,849,871
_2406
Echvi_2407: Echvi_2407 - Protein of unknown function (DUF3050)., at 2,850,097 to 2,850,879
_2407
Position (kb)
2848
2849
2850 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2847.759 kb on + strand, within Echvi_2405 at 2847.760 kb on - strand, within Echvi_2405 at 2847.773 kb on + strand, within Echvi_2405 at 2847.853 kb on - strand, within Echvi_2405 at 2847.869 kb on + strand, within Echvi_2405 at 2847.960 kb on + strand, within Echvi_2405 at 2847.970 kb on - strand, within Echvi_2405 at 2847.996 kb on - strand, within Echvi_2405 at 2848.015 kb on - strand, within Echvi_2405 at 2848.057 kb on + strand, within Echvi_2405 at 2848.057 kb on + strand, within Echvi_2405 at 2848.106 kb on - strand at 2848.129 kb on + strand at 2848.194 kb on - strand at 2848.209 kb on - strand at 2848.209 kb on - strand at 2848.209 kb on - strand at 2848.209 kb on - strand at 2848.212 kb on - strand at 2848.220 kb on + strand at 2848.231 kb on - strand at 2848.231 kb on - strand at 2848.231 kb on - strand at 2848.269 kb on + strand at 2848.283 kb on + strand at 2848.284 kb on - strand at 2848.284 kb on - strand at 2848.303 kb on + strand at 2848.304 kb on - strand at 2848.304 kb on - strand at 2848.305 kb on + strand at 2848.305 kb on + strand at 2848.306 kb on - strand at 2848.313 kb on - strand at 2848.314 kb on + strand at 2848.314 kb on + strand at 2848.315 kb on - strand at 2848.321 kb on - strand at 2848.321 kb on - strand at 2848.325 kb on + strand at 2848.325 kb on + strand at 2848.326 kb on - strand at 2848.326 kb on - strand at 2848.326 kb on - strand at 2848.326 kb on - strand at 2848.329 kb on - strand at 2848.330 kb on + strand at 2848.330 kb on + strand at 2848.377 kb on + strand at 2848.380 kb on + strand at 2848.381 kb on - strand at 2848.381 kb on - strand at 2848.381 kb on - strand at 2848.391 kb on - strand at 2848.392 kb on + strand at 2848.473 kb on + strand at 2848.473 kb on + strand at 2848.473 kb on + strand at 2848.473 kb on + strand at 2848.474 kb on - strand at 2848.474 kb on - strand at 2848.474 kb on - strand at 2848.476 kb on + strand at 2848.508 kb on + strand at 2848.566 kb on + strand at 2848.567 kb on - strand at 2848.569 kb on + strand at 2848.569 kb on + strand at 2848.570 kb on - strand at 2848.570 kb on - strand at 2848.570 kb on - strand at 2848.589 kb on - strand at 2848.614 kb on + strand at 2848.675 kb on + strand at 2848.676 kb on - strand at 2848.676 kb on - strand at 2848.676 kb on - strand at 2848.676 kb on - strand at 2848.676 kb on - strand at 2848.692 kb on + strand at 2848.692 kb on + strand at 2848.696 kb on + strand at 2848.696 kb on + strand at 2848.697 kb on - strand at 2848.723 kb on + strand at 2848.724 kb on - strand at 2848.726 kb on + strand at 2848.727 kb on - strand at 2848.741 kb on + strand at 2848.741 kb on + strand at 2848.741 kb on + strand at 2848.741 kb on + strand at 2848.741 kb on + strand at 2848.742 kb on - strand at 2848.742 kb on - strand at 2848.743 kb on + strand at 2848.743 kb on + strand at 2848.743 kb on + strand at 2848.743 kb on + strand at 2848.744 kb on - strand at 2848.744 kb on - strand at 2848.787 kb on + strand at 2848.790 kb on + strand at 2848.807 kb on - strand at 2848.815 kb on - strand at 2848.815 kb on - strand at 2848.914 kb on - strand, within Echvi_2406 at 2848.914 kb on - strand, within Echvi_2406 at 2849.088 kb on + strand, within Echvi_2406 at 2849.124 kb on - strand, within Echvi_2406 at 2849.149 kb on + strand, within Echvi_2406 at 2849.150 kb on - strand, within Echvi_2406 at 2849.172 kb on - strand, within Echvi_2406 at 2849.172 kb on - strand, within Echvi_2406 at 2849.175 kb on - strand, within Echvi_2406 at 2849.175 kb on - strand, within Echvi_2406 at 2849.181 kb on + strand, within Echvi_2406 at 2849.181 kb on + strand, within Echvi_2406 at 2849.181 kb on + strand, within Echvi_2406 at 2849.181 kb on + strand, within Echvi_2406 at 2849.182 kb on - strand, within Echvi_2406 at 2849.220 kb on - strand, within Echvi_2406 at 2849.287 kb on - strand, within Echvi_2406 at 2849.291 kb on - strand, within Echvi_2406 at 2849.291 kb on - strand, within Echvi_2406 at 2849.334 kb on + strand, within Echvi_2406 at 2849.335 kb on - strand, within Echvi_2406 at 2849.335 kb on - strand, within Echvi_2406 at 2849.339 kb on + strand, within Echvi_2406 at 2849.340 kb on - strand, within Echvi_2406 at 2849.342 kb on - strand, within Echvi_2406 at 2849.342 kb on - strand, within Echvi_2406 at 2849.342 kb on - strand at 2849.343 kb on + strand, within Echvi_2406 at 2849.343 kb on + strand, within Echvi_2406 at 2849.343 kb on + strand, within Echvi_2406 at 2849.344 kb on - strand, within Echvi_2406 at 2849.344 kb on - strand, within Echvi_2406 at 2849.344 kb on - strand, within Echvi_2406 at 2849.344 kb on - strand, within Echvi_2406 at 2849.344 kb on - strand, within Echvi_2406 at 2849.400 kb on + strand, within Echvi_2406 at 2849.400 kb on + strand, within Echvi_2406 at 2849.403 kb on - strand, within Echvi_2406 at 2849.405 kb on + strand, within Echvi_2406 at 2849.467 kb on - strand, within Echvi_2406 at 2849.594 kb on + strand, within Echvi_2406 at 2849.594 kb on + strand, within Echvi_2406 at 2849.594 kb on + strand, within Echvi_2406 at 2849.595 kb on - strand, within Echvi_2406 at 2849.595 kb on - strand, within Echvi_2406 at 2849.595 kb on - strand, within Echvi_2406 at 2849.610 kb on - strand, within Echvi_2406 at 2849.636 kb on + strand, within Echvi_2406 at 2849.636 kb on + strand, within Echvi_2406 at 2849.636 kb on + strand, within Echvi_2406 at 2849.658 kb on + strand, within Echvi_2406 at 2849.672 kb on + strand, within Echvi_2406 at 2849.739 kb on - strand, within Echvi_2406 at 2849.739 kb on - strand, within Echvi_2406 at 2849.813 kb on + strand at 2849.870 kb on - strand at 2849.939 kb on + strand at 2849.940 kb on - strand at 2849.983 kb on + strand at 2849.984 kb on - strand at 2850.004 kb on + strand at 2850.005 kb on - strand at 2850.005 kb on - strand at 2850.005 kb on - strand at 2850.005 kb on - strand at 2850.007 kb on + strand at 2850.007 kb on + strand at 2850.007 kb on + strand at 2850.008 kb on - strand at 2850.008 kb on - strand at 2850.046 kb on + strand at 2850.098 kb on + strand at 2850.099 kb on - strand at 2850.103 kb on + strand at 2850.276 kb on + strand, within Echvi_2407 at 2850.276 kb on + strand, within Echvi_2407 at 2850.291 kb on - strand, within Echvi_2407 at 2850.291 kb on - strand, within Echvi_2407 at 2850.291 kb on - strand, within Echvi_2407 at 2850.293 kb on + strand, within Echvi_2407 at 2850.463 kb on + strand, within Echvi_2407 at 2850.463 kb on + strand, within Echvi_2407 at 2850.464 kb on - strand, within Echvi_2407 at 2850.546 kb on + strand, within Echvi_2407 at 2850.546 kb on + strand, within Echvi_2407 at 2850.579 kb on - strand, within Echvi_2407 at 2850.616 kb on + strand, within Echvi_2407 at 2850.616 kb on + strand, within Echvi_2407 at 2850.638 kb on - strand, within Echvi_2407 at 2850.705 kb on + strand, within Echvi_2407 at 2850.706 kb on - strand, within Echvi_2407 at 2850.738 kb on + strand, within Echvi_2407 at 2850.791 kb on - strand, within Echvi_2407 at 2850.799 kb on + strand, within Echvi_2407 at 2850.799 kb on + strand at 2850.799 kb on + strand, within Echvi_2407 at 2850.800 kb on - strand, within Echvi_2407 at 2850.810 kb on - strand at 2850.811 kb on + strand at 2850.811 kb on + strand at 2850.831 kb on + strand at 2850.831 kb on + strand at 2850.831 kb on + strand at 2850.832 kb on - strand at 2850.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 2,847,759 + Echvi_2405 0.66 -1.1 2,847,760 - Echvi_2405 0.66 +0.5 2,847,773 + Echvi_2405 0.67 -0.1 2,847,853 - Echvi_2405 0.73 +0.5 2,847,869 + Echvi_2405 0.74 +2.3 2,847,960 + Echvi_2405 0.80 +0.6 2,847,970 - Echvi_2405 0.81 +0.8 2,847,996 - Echvi_2405 0.83 -0.2 2,848,015 - Echvi_2405 0.84 +0.4 2,848,057 + Echvi_2405 0.87 -0.1 2,848,057 + Echvi_2405 0.87 -2.1 2,848,106 - +0.7 2,848,129 + -1.1 2,848,194 - -0.5 2,848,209 - +0.4 2,848,209 - +0.7 2,848,209 - +0.2 2,848,209 - -2.1 2,848,212 - -1.3 2,848,220 + +0.2 2,848,231 - -0.4 2,848,231 - -0.4 2,848,231 - +1.1 2,848,269 + +1.0 2,848,283 + -0.4 2,848,284 - +0.5 2,848,284 - +1.2 2,848,303 + -0.6 2,848,304 - +0.0 2,848,304 - +0.5 2,848,305 + +0.9 2,848,305 + +0.5 2,848,306 - +0.6 2,848,313 - +0.0 2,848,314 + -1.3 2,848,314 + +0.7 2,848,315 - +0.0 2,848,321 - +2.0 2,848,321 - +0.7 2,848,325 + +0.2 2,848,325 + -1.5 2,848,326 - +0.0 2,848,326 - -1.2 2,848,326 - +0.5 2,848,326 - -2.5 2,848,329 - +0.2 2,848,330 + +1.5 2,848,330 + -0.4 2,848,377 + +0.7 2,848,380 + -1.3 2,848,381 - +0.2 2,848,381 - +0.2 2,848,381 - +0.0 2,848,391 - +0.0 2,848,392 + -1.0 2,848,473 + -0.8 2,848,473 + -0.1 2,848,473 + +1.8 2,848,473 + +1.3 2,848,474 - +0.3 2,848,474 - -0.3 2,848,474 - -0.1 2,848,476 + +1.7 2,848,508 + -3.0 2,848,566 + +0.3 2,848,567 - -1.0 2,848,569 + -1.0 2,848,569 + +1.4 2,848,570 - -0.4 2,848,570 - +0.6 2,848,570 - -1.2 2,848,589 - -0.7 2,848,614 + +0.6 2,848,675 + -1.3 2,848,676 - -0.8 2,848,676 - +1.0 2,848,676 - -1.2 2,848,676 - -1.2 2,848,676 - +0.4 2,848,692 + +1.1 2,848,692 + +0.4 2,848,696 + -1.6 2,848,696 + +0.8 2,848,697 - -0.8 2,848,723 + +0.2 2,848,724 - -0.1 2,848,726 + +0.3 2,848,727 - +0.3 2,848,741 + +0.2 2,848,741 + +1.0 2,848,741 + -0.2 2,848,741 + +0.0 2,848,741 + -2.6 2,848,742 - -0.2 2,848,742 - -0.5 2,848,743 + +1.3 2,848,743 + +0.5 2,848,743 + -0.6 2,848,743 + -0.3 2,848,744 - -0.1 2,848,744 - -0.8 2,848,787 + +0.4 2,848,790 + -0.4 2,848,807 - +0.2 2,848,815 - -1.8 2,848,815 - +0.3 2,848,914 - Echvi_2406 0.16 +0.3 2,848,914 - Echvi_2406 0.16 +1.2 2,849,088 + Echvi_2406 0.31 +0.0 2,849,124 - Echvi_2406 0.34 -0.0 2,849,149 + Echvi_2406 0.36 -0.2 2,849,150 - Echvi_2406 0.36 +2.1 2,849,172 - Echvi_2406 0.38 -0.4 2,849,172 - Echvi_2406 0.38 -0.1 2,849,175 - Echvi_2406 0.39 +0.6 2,849,175 - Echvi_2406 0.39 -0.3 2,849,181 + Echvi_2406 0.39 -1.8 2,849,181 + Echvi_2406 0.39 -0.3 2,849,181 + Echvi_2406 0.39 -1.5 2,849,181 + Echvi_2406 0.39 -0.3 2,849,182 - Echvi_2406 0.39 +0.1 2,849,220 - Echvi_2406 0.43 -0.4 2,849,287 - Echvi_2406 0.48 -0.5 2,849,291 - Echvi_2406 0.49 -0.1 2,849,291 - Echvi_2406 0.49 +0.7 2,849,334 + Echvi_2406 0.53 -0.2 2,849,335 - Echvi_2406 0.53 +0.6 2,849,335 - Echvi_2406 0.53 +0.4 2,849,339 + Echvi_2406 0.53 -0.4 2,849,340 - Echvi_2406 0.53 +0.3 2,849,342 - Echvi_2406 0.53 +1.9 2,849,342 - Echvi_2406 0.53 -2.0 2,849,342 - +3.0 2,849,343 + Echvi_2406 0.53 -1.3 2,849,343 + Echvi_2406 0.53 -0.2 2,849,343 + Echvi_2406 0.53 -2.0 2,849,344 - Echvi_2406 0.53 -0.3 2,849,344 - Echvi_2406 0.53 -0.3 2,849,344 - Echvi_2406 0.53 -0.6 2,849,344 - Echvi_2406 0.53 -2.3 2,849,344 - Echvi_2406 0.53 +0.2 2,849,400 + Echvi_2406 0.58 -0.2 2,849,400 + Echvi_2406 0.58 -0.3 2,849,403 - Echvi_2406 0.59 -0.9 2,849,405 + Echvi_2406 0.59 -1.5 2,849,467 - Echvi_2406 0.64 -1.7 2,849,594 + Echvi_2406 0.75 -0.8 2,849,594 + Echvi_2406 0.75 -0.8 2,849,594 + Echvi_2406 0.75 -0.1 2,849,595 - Echvi_2406 0.76 +1.7 2,849,595 - Echvi_2406 0.76 -0.1 2,849,595 - Echvi_2406 0.76 -0.4 2,849,610 - Echvi_2406 0.77 -0.4 2,849,636 + Echvi_2406 0.79 +0.3 2,849,636 + Echvi_2406 0.79 -1.0 2,849,636 + Echvi_2406 0.79 -0.6 2,849,658 + Echvi_2406 0.81 +1.1 2,849,672 + Echvi_2406 0.82 -1.7 2,849,739 - Echvi_2406 0.88 +0.5 2,849,739 - Echvi_2406 0.88 +0.4 2,849,813 + +1.2 2,849,870 - -1.1 2,849,939 + +0.7 2,849,940 - +0.6 2,849,983 + -0.3 2,849,984 - +0.8 2,850,004 + -2.2 2,850,005 - +0.6 2,850,005 - +0.0 2,850,005 - -1.0 2,850,005 - -0.7 2,850,007 + +0.1 2,850,007 + -0.6 2,850,007 + -2.0 2,850,008 - -1.1 2,850,008 - +0.0 2,850,046 + -0.4 2,850,098 + -0.2 2,850,099 - -0.1 2,850,103 + -0.2 2,850,276 + Echvi_2407 0.23 +1.6 2,850,276 + Echvi_2407 0.23 -2.7 2,850,291 - Echvi_2407 0.25 -0.8 2,850,291 - Echvi_2407 0.25 +1.5 2,850,291 - Echvi_2407 0.25 -1.9 2,850,293 + Echvi_2407 0.25 +0.9 2,850,463 + Echvi_2407 0.47 -1.9 2,850,463 + Echvi_2407 0.47 +0.4 2,850,464 - Echvi_2407 0.47 +1.3 2,850,546 + Echvi_2407 0.57 -1.0 2,850,546 + Echvi_2407 0.57 -0.1 2,850,579 - Echvi_2407 0.62 +0.3 2,850,616 + Echvi_2407 0.66 -3.4 2,850,616 + Echvi_2407 0.66 -0.9 2,850,638 - Echvi_2407 0.69 -1.9 2,850,705 + Echvi_2407 0.78 -0.9 2,850,706 - Echvi_2407 0.78 +1.4 2,850,738 + Echvi_2407 0.82 +0.2 2,850,791 - Echvi_2407 0.89 -1.5 2,850,799 + Echvi_2407 0.90 +0.3 2,850,799 + +1.2 2,850,799 + Echvi_2407 0.90 +0.2 2,850,800 - Echvi_2407 0.90 +0.1 2,850,810 - -0.3 2,850,811 + -1.6 2,850,811 + +1.2 2,850,831 + -1.1 2,850,831 + -0.2 2,850,831 + +0.2 2,850,832 - +1.1 2,850,869 - +0.6
Or see this region's nucleotide sequence