Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1013

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
1,175,408	+		Echvi_1012	0.80	+0.0
1,175,409	-		Echvi_1012	0.80	-0.3
1,175,415	-		Echvi_1012	0.80	+0.4
1,175,416	+		Echvi_1012	0.80	-2.7
1,175,416	+		Echvi_1012	0.80	+0.5
1,175,417	-		Echvi_1012	0.81	-1.3
1,175,417	-		Echvi_1012	0.81	-0.5
1,175,417	-		Echvi_1012	0.81	+1.4
1,175,496	+		Echvi_1012	0.84	-1.7
1,175,613	+		Echvi_1012	0.88	-1.8
1,175,613	+		Echvi_1012	0.88	-0.8
1,175,614	-		Echvi_1012	0.88	+1.2
1,175,625	+		Echvi_1012	0.89	-1.4
1,175,643	+		Echvi_1012	0.89	+1.1
1,175,644	-		Echvi_1012	0.90	-1.1
1,175,646	+		Echvi_1012	0.90	-0.9
1,175,646	+		Echvi_1012	0.90	-0.5
1,175,647	-		Echvi_1012	0.90	-0.4
1,175,647	-		Echvi_1012	0.90	-1.0
1,175,687	+				-0.0
1,175,688	-				+1.4
1,175,709	-				-2.1
1,175,741	+				-0.1
1,175,815	+				+0.5
1,175,816	-				+0.5
1,175,816	-				+1.6
1,175,820	+				+0.8
1,175,870	+				-0.3
1,175,870	+				-1.0
1,175,870	+				-0.6
1,175,870	+				-0.1
1,175,870	+				-0.1
1,175,870	+				-2.3
1,175,871	-				-2.3
1,175,871	-				-2.3
1,175,924	+				-2.0
1,175,925	-				-0.9
1,175,925	-				-0.2
1,176,045	+				-2.5
1,176,045	+				+0.1
1,176,046	-				-0.1
1,176,068	+				+1.3
1,176,068	+				+1.3
1,176,068	+				+0.9
1,176,069	-				+0.6
1,176,102	+				+0.3
1,176,145	+				+1.2
1,176,146	-				+0.7
1,176,146	-				-1.0
1,176,148	-				+0.2
1,176,148	-				-0.0
1,176,210	+				-2.5
1,176,213	-				-1.1
1,176,258	+				+1.2
1,176,298	-				+4.3
1,176,301	+				-0.1
1,176,302	-				-2.9
1,176,302	-				-0.3
1,176,315	-				-0.7
1,176,340	+				+0.2
1,176,341	-				+1.7
1,176,341	-				-1.0
1,176,341	-				+0.1
1,176,344	-				+0.4
1,176,360	-				-1.7
1,176,375	+				-0.5
1,176,375	+				+0.8
1,176,375	+				+2.7
1,176,376	-				-0.4
1,176,376	-				-0.7
1,176,376	-				-0.5
1,176,430	-				-0.9
1,176,430	-				-1.6
1,176,431	+				+0.7
1,176,432	-				-0.1
1,176,432	-				-0.5
1,176,432	-				+0.4
1,176,552	+		Echvi_1013	0.11	-1.0
1,176,552	+		Echvi_1013	0.11	+1.7
1,176,553	-		Echvi_1013	0.11	+1.9
1,176,687	+		Echvi_1013	0.19	+0.5
1,176,687	+		Echvi_1013	0.19	+1.7
1,176,687	+		Echvi_1013	0.19	+1.3
1,176,688	-		Echvi_1013	0.19	+1.0
1,176,688	-		Echvi_1013	0.19	+0.1
1,176,688	-		Echvi_1013	0.19	+1.6
1,176,717	+		Echvi_1013	0.21	+0.0
1,176,717	+		Echvi_1013	0.21	+0.7
1,176,717	+		Echvi_1013	0.21	-1.1
1,176,717	+		Echvi_1013	0.21	-0.1
1,176,718	-		Echvi_1013	0.21	+0.3
1,176,718	-		Echvi_1013	0.21	+1.2
1,176,718	-		Echvi_1013	0.21	-0.1
1,176,718	-		Echvi_1013	0.21	+0.3
1,176,718	-		Echvi_1013	0.21	-1.8
1,176,844	+		Echvi_1013	0.30	-0.2
1,176,845	-		Echvi_1013	0.30	+0.2
1,176,857	+		Echvi_1013	0.30	-0.0
1,176,863	+		Echvi_1013	0.31	-0.1
1,176,912	+		Echvi_1013	0.34	-0.5
1,176,912	+		Echvi_1013	0.34	+1.7
1,177,000	+		Echvi_1013	0.40	+1.2
1,177,000	+		Echvi_1013	0.40	+0.6
1,177,001	-		Echvi_1013	0.40	+0.3
1,177,047	+		Echvi_1013	0.43	-0.3
1,177,047	+		Echvi_1013	0.43	+1.0
1,177,048	-		Echvi_1013	0.43	-1.4
1,177,071	+		Echvi_1013	0.44	+3.9
1,177,071	+		Echvi_1013	0.44	+2.1
1,177,072	-		Echvi_1013	0.44	+0.2
1,177,081	+		Echvi_1013	0.45	+0.6
1,177,127	-		Echvi_1013	0.48	+0.1
1,177,161	-		Echvi_1013	0.50	-1.3
1,177,227	+		Echvi_1013	0.54	+0.6
1,177,228	-		Echvi_1013	0.55	-0.0
1,177,248	+		Echvi_1013	0.56	+2.4
1,177,248	+		Echvi_1013	0.56	-1.6
1,177,249	-		Echvi_1013	0.56	-0.7
1,177,261	+		Echvi_1013	0.57	-0.6
1,177,261	+				+0.7
1,177,261	+		Echvi_1013	0.57	-1.4
1,177,262	-		Echvi_1013	0.57	+0.7
1,177,262	-		Echvi_1013	0.57	-0.6
1,177,262	-		Echvi_1013	0.57	+1.0
1,177,262	-		Echvi_1013	0.57	-2.5
1,177,306	+		Echvi_1013	0.60	-0.3
1,177,306	+		Echvi_1013	0.60	-1.6
1,177,306	+		Echvi_1013	0.60	+0.4
1,177,307	-		Echvi_1013	0.60	-0.1
1,177,307	-		Echvi_1013	0.60	-0.9
1,177,310	+		Echvi_1013	0.60	+2.3
1,177,311	-		Echvi_1013	0.60	-2.1
1,177,311	-		Echvi_1013	0.60	-1.1
1,177,327	+		Echvi_1013	0.61	-1.7
1,177,328	-		Echvi_1013	0.61	-1.8
1,177,328	-		Echvi_1013	0.61	+0.7
1,177,388	+		Echvi_1013	0.65	+0.1
1,177,389	-		Echvi_1013	0.65	+0.5
1,177,423	+		Echvi_1013	0.67	-0.4
1,177,423	+		Echvi_1013	0.67	-0.5
1,177,423	+		Echvi_1013	0.67	+1.6
1,177,424	-		Echvi_1013	0.67	-2.2
1,177,424	-		Echvi_1013	0.67	+0.7
1,177,489	+		Echvi_1013	0.72	-2.4
1,177,490	-		Echvi_1013	0.72	-1.3
1,177,497	+		Echvi_1013	0.72	+0.5
1,177,527	+		Echvi_1013	0.74	+1.5
1,177,527	+		Echvi_1013	0.74	-0.8
1,177,527	+		Echvi_1013	0.74	+0.6
1,177,627	+		Echvi_1013	0.81	-0.2
1,177,628	-		Echvi_1013	0.81	-1.9
1,177,628	-		Echvi_1013	0.81	-0.5
1,177,628	-		Echvi_1013	0.81	-2.4
1,177,751	-		Echvi_1013	0.89	-0.4
1,177,824	+				-0.4
1,177,825	-				+0.7
1,177,847	+				+1.1
1,177,848	-				-0.1
1,177,849	+				-1.1
1,177,850	-				+0.5
1,177,906	+				-1.1
1,177,907	-				+0.7
1,177,915	+				-0.5
1,177,916	-				-1.9
1,177,916	-				-2.6
1,177,916	-				-0.6
1,177,916	-				+1.6
1,177,943	-				-0.6
1,178,002	+				+0.9
1,178,006	-				+0.2
1,178,042	+		Echvi_1014	0.13	+2.0
1,178,074	+		Echvi_1014	0.33	+1.2
1,178,074	+		Echvi_1014	0.33	-1.1
1,178,074	+		Echvi_1014	0.33	-0.0
1,178,074	+		Echvi_1014	0.33	-0.5
1,178,075	-		Echvi_1014	0.33	-0.3
1,178,075	-		Echvi_1014	0.33	-0.2
1,178,075	-		Echvi_1014	0.33	+0.2
1,178,156	+		Echvi_1014	0.84	+1.7
1,178,179	-				-0.8