Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0207 and Echvi_0208 are separated by 153 nucleotides Echvi_0208 and Echvi_0209 are separated by 14 nucleotides
Echvi_0207: Echvi_0207 - Transposase DDE domain., at 226,700 to 227,596
_0207
Echvi_0208: Echvi_0208 - hypothetical protein, at 227,750 to 228,499
_0208
Echvi_0209: Echvi_0209 - hypothetical protein, at 228,514 to 229,602
_0209
Position (kb) 227
228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 227.873 kb on + strand, within Echvi_0208 at 227.874 kb on - strand, within Echvi_0208 at 227.885 kb on + strand, within Echvi_0208 at 228.006 kb on - strand, within Echvi_0208 at 228.054 kb on + strand, within Echvi_0208 at 228.055 kb on - strand, within Echvi_0208 at 228.128 kb on - strand, within Echvi_0208 at 228.128 kb on - strand, within Echvi_0208 at 228.164 kb on + strand, within Echvi_0208 at 228.164 kb on + strand, within Echvi_0208 at 228.165 kb on - strand, within Echvi_0208 at 228.264 kb on + strand, within Echvi_0208 at 228.264 kb on + strand, within Echvi_0208 at 228.265 kb on - strand, within Echvi_0208 at 228.265 kb on - strand, within Echvi_0208 at 228.338 kb on + strand, within Echvi_0208 at 228.361 kb on + strand, within Echvi_0208 at 228.522 kb on - strand at 228.543 kb on + strand at 228.543 kb on + strand at 228.544 kb on - strand at 228.544 kb on - strand at 228.545 kb on + strand at 228.545 kb on + strand at 228.545 kb on + strand at 228.546 kb on - strand at 228.546 kb on - strand at 228.546 kb on - strand at 228.613 kb on + strand at 228.613 kb on + strand at 228.613 kb on + strand at 228.614 kb on - strand at 228.614 kb on - strand at 228.618 kb on + strand at 228.632 kb on + strand, within Echvi_0209 at 228.644 kb on + strand, within Echvi_0209 at 228.651 kb on - strand, within Echvi_0209 at 228.651 kb on - strand, within Echvi_0209 at 228.657 kb on + strand, within Echvi_0209 at 228.657 kb on + strand, within Echvi_0209 at 228.669 kb on - strand, within Echvi_0209 at 228.729 kb on + strand, within Echvi_0209 at 228.730 kb on - strand, within Echvi_0209 at 228.736 kb on - strand, within Echvi_0209 at 228.760 kb on + strand, within Echvi_0209 at 228.767 kb on + strand, within Echvi_0209 at 228.814 kb on - strand, within Echvi_0209 at 229.021 kb on + strand, within Echvi_0209 at 229.039 kb on + strand, within Echvi_0209 at 229.120 kb on + strand, within Echvi_0209 at 229.120 kb on + strand, within Echvi_0209 at 229.121 kb on - strand, within Echvi_0209 at 229.130 kb on + strand, within Echvi_0209 at 229.130 kb on + strand, within Echvi_0209 at 229.130 kb on + strand, within Echvi_0209 at 229.130 kb on + strand, within Echvi_0209 at 229.170 kb on - strand, within Echvi_0209 at 229.186 kb on + strand, within Echvi_0209 at 229.206 kb on + strand, within Echvi_0209 at 229.207 kb on - strand, within Echvi_0209 at 229.242 kb on + strand, within Echvi_0209 at 229.243 kb on - strand, within Echvi_0209 at 229.318 kb on - strand, within Echvi_0209 at 229.336 kb on - strand, within Echvi_0209 at 229.346 kb on - strand, within Echvi_0209 at 229.375 kb on + strand, within Echvi_0209 at 229.376 kb on - strand, within Echvi_0209 at 229.408 kb on - strand, within Echvi_0209 at 229.443 kb on + strand, within Echvi_0209 at 229.443 kb on + strand, within Echvi_0209
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 227,873 + Echvi_0208 0.16 +0.3 227,874 - Echvi_0208 0.17 +0.2 227,885 + Echvi_0208 0.18 +0.4 228,006 - Echvi_0208 0.34 +0.9 228,054 + Echvi_0208 0.41 -0.5 228,055 - Echvi_0208 0.41 -0.9 228,128 - Echvi_0208 0.50 -1.6 228,128 - Echvi_0208 0.50 -0.8 228,164 + Echvi_0208 0.55 -0.2 228,164 + Echvi_0208 0.55 -1.5 228,165 - Echvi_0208 0.55 +0.7 228,264 + Echvi_0208 0.69 -1.1 228,264 + Echvi_0208 0.69 -2.8 228,265 - Echvi_0208 0.69 -1.8 228,265 - Echvi_0208 0.69 -1.9 228,338 + Echvi_0208 0.78 +0.9 228,361 + Echvi_0208 0.81 -2.1 228,522 - -0.4 228,543 + +0.1 228,543 + +2.0 228,544 - -0.7 228,544 - +0.9 228,545 + -1.5 228,545 + +1.2 228,545 + +0.3 228,546 - +1.8 228,546 - +0.7 228,546 - +1.1 228,613 + +1.7 228,613 + -0.5 228,613 + -0.4 228,614 - -1.9 228,614 - -0.6 228,618 + +2.6 228,632 + Echvi_0209 0.11 +0.6 228,644 + Echvi_0209 0.12 -1.0 228,651 - Echvi_0209 0.13 -1.5 228,651 - Echvi_0209 0.13 +0.2 228,657 + Echvi_0209 0.13 -3.6 228,657 + Echvi_0209 0.13 -1.9 228,669 - Echvi_0209 0.14 -1.1 228,729 + Echvi_0209 0.20 -0.3 228,730 - Echvi_0209 0.20 -0.2 228,736 - Echvi_0209 0.20 -1.5 228,760 + Echvi_0209 0.23 -0.5 228,767 + Echvi_0209 0.23 -2.1 228,814 - Echvi_0209 0.28 -1.3 229,021 + Echvi_0209 0.47 +0.6 229,039 + Echvi_0209 0.48 -1.7 229,120 + Echvi_0209 0.56 +1.2 229,120 + Echvi_0209 0.56 -1.9 229,121 - Echvi_0209 0.56 +0.2 229,130 + Echvi_0209 0.57 +0.7 229,130 + Echvi_0209 0.57 -0.3 229,130 + Echvi_0209 0.57 -1.2 229,130 + Echvi_0209 0.57 +1.4 229,170 - Echvi_0209 0.60 -0.3 229,186 + Echvi_0209 0.62 -0.1 229,206 + Echvi_0209 0.64 -0.6 229,207 - Echvi_0209 0.64 +1.0 229,242 + Echvi_0209 0.67 -1.2 229,243 - Echvi_0209 0.67 -0.5 229,318 - Echvi_0209 0.74 -2.4 229,336 - Echvi_0209 0.75 -0.1 229,346 - Echvi_0209 0.76 +0.1 229,375 + Echvi_0209 0.79 -0.7 229,376 - Echvi_0209 0.79 +0.2 229,408 - Echvi_0209 0.82 -0.5 229,443 + Echvi_0209 0.85 +1.1 229,443 + Echvi_0209 0.85 -0.1
Or see this region's nucleotide sequence