Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0154 and Echvi_0155 are separated by 0 nucleotides Echvi_0155 and Echvi_0156 are separated by 8 nucleotides Echvi_0156 and Echvi_0157 overlap by 8 nucleotides Echvi_0157 and Echvi_0158 are separated by 2 nucleotides
Echvi_0154: Echvi_0154 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 156,184 to 157,167
_0154
Echvi_0155: Echvi_0155 - ketose-bisphosphate aldolases, at 157,168 to 157,992
_0155
Echvi_0156: Echvi_0156 - Sugar kinases, ribokinase family, at 158,001 to 158,945
_0156
Echvi_0157: Echvi_0157 - hexose kinase, 1-phosphofructokinase family, at 158,938 to 159,861
_0157
Echvi_0158: Echvi_0158 - Predicted phosphosugar isomerases, at 159,864 to 161,036
_0158
Position (kb) 158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 157.133 kb on - strand at 157.133 kb on - strand at 157.138 kb on + strand at 157.151 kb on - strand at 157.152 kb on + strand at 157.152 kb on + strand at 157.152 kb on + strand at 157.199 kb on + strand at 157.200 kb on - strand at 157.276 kb on + strand, within Echvi_0155 at 157.277 kb on - strand, within Echvi_0155 at 157.592 kb on + strand, within Echvi_0155 at 157.592 kb on + strand, within Echvi_0155 at 157.592 kb on + strand, within Echvi_0155 at 157.609 kb on + strand, within Echvi_0155 at 157.622 kb on + strand, within Echvi_0155 at 157.626 kb on + strand, within Echvi_0155 at 157.626 kb on + strand, within Echvi_0155 at 157.661 kb on - strand, within Echvi_0155 at 157.661 kb on - strand, within Echvi_0155 at 157.784 kb on + strand, within Echvi_0155 at 157.785 kb on - strand, within Echvi_0155 at 157.835 kb on + strand, within Echvi_0155 at 158.002 kb on + strand at 158.041 kb on - strand at 158.049 kb on + strand at 158.057 kb on + strand at 158.058 kb on - strand at 158.084 kb on + strand at 158.160 kb on - strand, within Echvi_0156 at 158.200 kb on - strand, within Echvi_0156 at 158.215 kb on - strand, within Echvi_0156 at 158.327 kb on + strand, within Echvi_0156 at 158.379 kb on + strand, within Echvi_0156 at 158.379 kb on + strand, within Echvi_0156 at 158.379 kb on + strand, within Echvi_0156 at 158.379 kb on + strand, within Echvi_0156 at 158.379 kb on + strand, within Echvi_0156 at 158.380 kb on - strand, within Echvi_0156 at 158.381 kb on + strand at 158.381 kb on + strand, within Echvi_0156 at 158.381 kb on + strand, within Echvi_0156 at 158.382 kb on - strand, within Echvi_0156 at 158.382 kb on - strand, within Echvi_0156 at 158.382 kb on - strand, within Echvi_0156 at 158.385 kb on + strand, within Echvi_0156 at 158.385 kb on + strand, within Echvi_0156 at 158.386 kb on - strand, within Echvi_0156 at 158.496 kb on - strand, within Echvi_0156 at 158.498 kb on + strand, within Echvi_0156 at 158.611 kb on + strand, within Echvi_0156 at 158.615 kb on + strand, within Echvi_0156 at 158.615 kb on + strand, within Echvi_0156 at 158.615 kb on + strand, within Echvi_0156 at 158.639 kb on - strand, within Echvi_0156 at 158.666 kb on + strand, within Echvi_0156 at 158.666 kb on + strand, within Echvi_0156 at 158.666 kb on + strand, within Echvi_0156 at 158.965 kb on + strand at 158.966 kb on - strand at 158.998 kb on - strand at 158.999 kb on + strand at 159.001 kb on + strand at 159.001 kb on + strand at 159.001 kb on + strand at 159.077 kb on + strand, within Echvi_0157 at 159.100 kb on + strand, within Echvi_0157 at 159.360 kb on + strand, within Echvi_0157 at 159.556 kb on - strand, within Echvi_0157 at 159.591 kb on - strand, within Echvi_0157 at 159.613 kb on + strand, within Echvi_0157 at 159.705 kb on + strand, within Echvi_0157 at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.825 kb on + strand at 159.826 kb on - strand at 159.826 kb on - strand at 159.826 kb on - strand at 159.826 kb on - strand at 159.826 kb on - strand at 159.829 kb on + strand at 159.829 kb on + strand at 159.829 kb on + strand at 159.875 kb on + strand at 159.875 kb on + strand at 159.877 kb on + strand at 159.878 kb on - strand at 159.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 157,133 - +1.0 157,133 - -0.4 157,138 + -1.6 157,151 - +0.8 157,152 + +1.1 157,152 + -0.7 157,152 + -0.4 157,199 + -0.2 157,200 - -0.1 157,276 + Echvi_0155 0.13 -0.1 157,277 - Echvi_0155 0.13 -0.1 157,592 + Echvi_0155 0.51 -0.3 157,592 + Echvi_0155 0.51 -0.8 157,592 + Echvi_0155 0.51 +0.3 157,609 + Echvi_0155 0.53 -0.1 157,622 + Echvi_0155 0.55 -0.4 157,626 + Echvi_0155 0.56 -0.1 157,626 + Echvi_0155 0.56 +2.2 157,661 - Echvi_0155 0.60 -2.0 157,661 - Echvi_0155 0.60 -1.5 157,784 + Echvi_0155 0.75 +1.2 157,785 - Echvi_0155 0.75 -0.3 157,835 + Echvi_0155 0.81 -1.3 158,002 + +0.3 158,041 - +1.2 158,049 + -1.5 158,057 + -0.0 158,058 - -0.5 158,084 + -0.2 158,160 - Echvi_0156 0.17 -2.0 158,200 - Echvi_0156 0.21 -0.6 158,215 - Echvi_0156 0.23 -1.7 158,327 + Echvi_0156 0.34 +0.3 158,379 + Echvi_0156 0.40 -0.2 158,379 + Echvi_0156 0.40 +0.8 158,379 + Echvi_0156 0.40 +0.5 158,379 + Echvi_0156 0.40 -0.3 158,379 + Echvi_0156 0.40 +0.1 158,380 - Echvi_0156 0.40 +1.3 158,381 + +3.2 158,381 + Echvi_0156 0.40 +1.4 158,381 + Echvi_0156 0.40 -1.2 158,382 - Echvi_0156 0.40 -1.1 158,382 - Echvi_0156 0.40 +2.0 158,382 - Echvi_0156 0.40 +0.2 158,385 + Echvi_0156 0.41 +2.5 158,385 + Echvi_0156 0.41 -1.9 158,386 - Echvi_0156 0.41 +1.2 158,496 - Echvi_0156 0.52 +0.8 158,498 + Echvi_0156 0.53 -2.0 158,611 + Echvi_0156 0.65 +0.5 158,615 + Echvi_0156 0.65 -0.0 158,615 + Echvi_0156 0.65 -0.2 158,615 + Echvi_0156 0.65 -0.2 158,639 - Echvi_0156 0.68 +1.9 158,666 + Echvi_0156 0.70 -0.1 158,666 + Echvi_0156 0.70 +0.3 158,666 + Echvi_0156 0.70 +0.5 158,965 + -1.7 158,966 - +1.2 158,998 - -0.8 158,999 + +4.5 159,001 + -0.4 159,001 + -0.9 159,001 + +0.5 159,077 + Echvi_0157 0.15 +1.0 159,100 + Echvi_0157 0.18 +0.4 159,360 + Echvi_0157 0.46 +0.3 159,556 - Echvi_0157 0.67 +0.8 159,591 - Echvi_0157 0.71 -0.3 159,613 + Echvi_0157 0.73 -2.2 159,705 + Echvi_0157 0.83 -3.3 159,821 + +0.4 159,821 + +1.2 159,821 + -1.6 159,821 + +0.4 159,825 + +0.1 159,826 - +0.2 159,826 - -0.2 159,826 - +0.2 159,826 - -0.4 159,826 - -0.2 159,829 + -0.3 159,829 + +3.2 159,829 + -0.8 159,875 + -0.4 159,875 + +1.8 159,877 + +1.7 159,878 - +0.2 159,878 - +0.0
Or see this region's nucleotide sequence