Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0063

Experiment: nitrate (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0062 and Echvi_0063 are separated by 263 nucleotidesEchvi_0063 and Echvi_0064 are separated by 609 nucleotidesEchvi_0064 and Echvi_0065 are separated by 95 nucleotides Echvi_0062: Echvi_0062 - Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis, at 60,652 to 61,785 _0062 Echvi_0063: Echvi_0063 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 62,049 to 63,203 _0063 Echvi_0064: Echvi_0064 - 5S, at 63,813 to 63,924 _0064 Echvi_0065: Echvi_0065 - 23S, at 64,020 to 66,913 _0065 Position (kb) 62 63 64Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 61.053 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.064 kb on - strand, within Echvi_0062at 61.080 kb on + strand, within Echvi_0062at 61.092 kb on + strand, within Echvi_0062at 61.092 kb on + strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.108 kb on - strand, within Echvi_0062at 61.108 kb on - strand, within Echvi_0062at 61.116 kb on - strand, within Echvi_0062at 61.142 kb on - strand, within Echvi_0062at 61.183 kb on - strand, within Echvi_0062at 61.238 kb on + strand, within Echvi_0062at 61.279 kb on + strand, within Echvi_0062at 61.280 kb on - strand, within Echvi_0062at 61.329 kb on - strand, within Echvi_0062at 61.331 kb on + strand, within Echvi_0062at 61.391 kb on - strand, within Echvi_0062at 61.500 kb on + strand, within Echvi_0062at 61.625 kb on + strand, within Echvi_0062at 61.626 kb on - strand, within Echvi_0062at 61.635 kb on + strand, within Echvi_0062at 61.651 kb on - strand, within Echvi_0062at 61.651 kb on - strand, within Echvi_0062at 61.651 kb on - strand, within Echvi_0062at 61.669 kb on + strand, within Echvi_0062at 61.670 kb on - strand, within Echvi_0062at 61.685 kb on + strandat 61.685 kb on + strandat 61.686 kb on - strandat 61.686 kb on - strandat 61.812 kb on - strandat 61.815 kb on - strandat 61.815 kb on - strandat 61.937 kb on - strandat 61.955 kb on + strandat 61.955 kb on + strandat 61.956 kb on - strandat 61.998 kb on + strandat 62.030 kb on + strandat 62.032 kb on + strandat 62.050 kb on + strandat 62.060 kb on + strandat 62.075 kb on + strandat 62.075 kb on + strandat 62.076 kb on - strandat 62.111 kb on + strandat 62.111 kb on + strandat 62.111 kb on + strandat 62.136 kb on + strandat 62.196 kb on + strand, within Echvi_0063at 62.211 kb on + strand, within Echvi_0063at 62.263 kb on - strand, within Echvi_0063at 62.292 kb on - strand, within Echvi_0063at 62.301 kb on + strand, within Echvi_0063at 62.328 kb on - strand, within Echvi_0063at 62.328 kb on - strand, within Echvi_0063at 62.344 kb on - strand, within Echvi_0063at 62.388 kb on - strand, within Echvi_0063at 62.412 kb on + strand, within Echvi_0063at 62.412 kb on + strand, within Echvi_0063at 62.423 kb on + strand, within Echvi_0063at 62.423 kb on + strand, within Echvi_0063at 62.440 kb on - strand, within Echvi_0063at 62.440 kb on - strand, within Echvi_0063at 62.463 kb on + strand, within Echvi_0063at 62.507 kb on + strand, within Echvi_0063at 62.507 kb on + strand, within Echvi_0063at 62.508 kb on - strand, within Echvi_0063at 62.522 kb on + strand, within Echvi_0063at 62.529 kb on + strand, within Echvi_0063at 62.529 kb on + strand, within Echvi_0063at 62.529 kb on + strand, within Echvi_0063at 62.530 kb on - strand, within Echvi_0063at 62.530 kb on - strand, within Echvi_0063at 62.530 kb on - strand, within Echvi_0063at 62.538 kb on + strand, within Echvi_0063at 62.538 kb on + strand, within Echvi_0063at 62.551 kb on - strand, within Echvi_0063at 62.600 kb on + strand, within Echvi_0063at 62.601 kb on - strand, within Echvi_0063at 62.602 kb on + strand, within Echvi_0063at 62.617 kb on - strand, within Echvi_0063at 62.654 kb on - strand, within Echvi_0063at 62.657 kb on + strand, within Echvi_0063at 62.657 kb on + strand, within Echvi_0063at 62.657 kb on + strand, within Echvi_0063at 62.658 kb on - strand, within Echvi_0063at 62.658 kb on - strand, within Echvi_0063at 62.658 kb on - strand, within Echvi_0063at 62.658 kb on - strand, within Echvi_0063at 62.658 kb on - strand, within Echvi_0063at 62.660 kb on + strand, within Echvi_0063at 62.702 kb on + strand, within Echvi_0063at 62.705 kb on - strand, within Echvi_0063at 62.708 kb on + strand, within Echvi_0063at 62.708 kb on + strand, within Echvi_0063at 62.708 kb on + strand, within Echvi_0063at 62.708 kb on + strand, within Echvi_0063at 62.708 kb on + strand, within Echvi_0063at 62.708 kb on + strand, within Echvi_0063at 62.709 kb on - strand, within Echvi_0063at 62.709 kb on - strand, within Echvi_0063at 62.709 kb on - strand, within Echvi_0063at 62.709 kb on - strand, within Echvi_0063at 62.712 kb on + strand, within Echvi_0063at 62.712 kb on + strand, within Echvi_0063at 62.713 kb on - strand, within Echvi_0063at 62.744 kb on + strand, within Echvi_0063at 62.782 kb on - strand, within Echvi_0063at 62.818 kb on + strand, within Echvi_0063at 62.830 kb on - strand, within Echvi_0063at 62.886 kb on + strand, within Echvi_0063at 62.887 kb on - strand, within Echvi_0063at 62.887 kb on - strand, within Echvi_0063at 62.951 kb on + strand, within Echvi_0063at 62.960 kb on + strand, within Echvi_0063at 62.960 kb on + strand, within Echvi_0063at 62.961 kb on - strand, within Echvi_0063at 62.961 kb on - strand, within Echvi_0063at 63.004 kb on + strand, within Echvi_0063at 63.005 kb on - strand, within Echvi_0063at 63.030 kb on + strand, within Echvi_0063at 63.062 kb on + strand, within Echvi_0063at 63.076 kb on + strand, within Echvi_0063at 63.111 kb on + strandat 63.150 kb on + strandat 63.153 kb on + strandat 63.154 kb on - strandat 63.154 kb on - strandat 63.155 kb on + strandat 63.155 kb on + strandat 63.156 kb on - strandat 63.156 kb on - strandat 63.156 kb on - strandat 63.156 kb on - strandat 63.189 kb on + strandat 63.189 kb on + strandat 63.195 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.199 kb on - strandat 63.220 kb on + strandat 63.227 kb on + strandat 63.466 kb on - strandat 63.517 kb on - strandat 63.517 kb on - strandat 63.579 kb on + strandat 63.580 kb on - strandat 63.737 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
remove
61,053 + Echvi_0062 0.35 -1.2
61,060 + Echvi_0062 0.36 +0.0
61,060 + Echvi_0062 0.36 +1.4
61,060 + Echvi_0062 0.36 +1.1
61,060 + Echvi_0062 0.36 -0.6
61,060 + Echvi_0062 0.36 +0.2
61,060 + Echvi_0062 0.36 -2.5
61,061 - Echvi_0062 0.36 +0.3
61,061 - Echvi_0062 0.36 -0.3
61,061 - Echvi_0062 0.36 -0.8
61,061 - Echvi_0062 0.36 -2.8
61,061 - Echvi_0062 0.36 +1.3
61,061 - Echvi_0062 0.36 +0.2
61,061 - Echvi_0062 0.36 -0.3
61,061 - Echvi_0062 0.36 +1.1
61,064 - Echvi_0062 0.36 +1.8
61,080 + Echvi_0062 0.38 +0.3
61,092 + Echvi_0062 0.39 -0.0
61,092 + Echvi_0062 0.39 -0.1
61,093 - Echvi_0062 0.39 -2.0
61,093 - Echvi_0062 0.39 +0.2
61,093 - Echvi_0062 0.39 +0.8
61,093 - Echvi_0062 0.39 -0.1
61,093 - Echvi_0062 0.39 +1.4
61,093 - Echvi_0062 0.39 -0.1
61,108 - Echvi_0062 0.40 +0.9
61,108 - Echvi_0062 0.40 +0.0
61,116 - Echvi_0062 0.41 -0.5
61,142 - Echvi_0062 0.43 +1.1
61,183 - Echvi_0062 0.47 +0.4
61,238 + Echvi_0062 0.52 +2.0
61,279 + Echvi_0062 0.55 -0.8
61,280 - Echvi_0062 0.55 -1.4
61,329 - Echvi_0062 0.60 -2.1
61,331 + Echvi_0062 0.60 +0.9
61,391 - Echvi_0062 0.65 +1.5
61,500 + Echvi_0062 0.75 +0.4
61,625 + Echvi_0062 0.86 +0.5
61,626 - Echvi_0062 0.86 +1.3
61,635 + Echvi_0062 0.87 -2.8
61,651 - Echvi_0062 0.88 +0.6
61,651 - Echvi_0062 0.88 -1.0
61,651 - Echvi_0062 0.88 -2.4
61,669 + Echvi_0062 0.90 -0.6
61,670 - Echvi_0062 0.90 +0.2
61,685 + -1.1
61,685 + +0.9
61,686 - -1.4
61,686 - +0.2
61,812 - +3.0
61,815 - +1.0
61,815 - -0.1
61,937 - +0.0
61,955 + +0.8
61,955 + +0.1
61,956 - -1.1
61,998 + -2.9
62,030 + -0.1
62,032 + -0.8
62,050 + -0.8
62,060 + -1.0
62,075 + +0.2
62,075 + +0.4
62,076 - -0.5
62,111 + -0.4
62,111 + +0.9
62,111 + -0.7
62,136 + -0.3
62,196 + Echvi_0063 0.13 -0.6
62,211 + Echvi_0063 0.14 -0.0
62,263 - Echvi_0063 0.19 -0.5
62,292 - Echvi_0063 0.21 -0.6
62,301 + Echvi_0063 0.22 +0.0
62,328 - Echvi_0063 0.24 -1.2
62,328 - Echvi_0063 0.24 -0.5
62,344 - Echvi_0063 0.26 +0.6
62,388 - Echvi_0063 0.29 -0.5
62,412 + Echvi_0063 0.31 +0.4
62,412 + Echvi_0063 0.31 +0.2
62,423 + Echvi_0063 0.32 +0.1
62,423 + Echvi_0063 0.32 -0.6
62,440 - Echvi_0063 0.34 +0.1
62,440 - Echvi_0063 0.34 +0.1
62,463 + Echvi_0063 0.36 +0.6
62,507 + Echvi_0063 0.40 +0.6
62,507 + Echvi_0063 0.40 +0.1
62,508 - Echvi_0063 0.40 -1.3
62,522 + Echvi_0063 0.41 +0.2
62,529 + Echvi_0063 0.42 -1.4
62,529 + Echvi_0063 0.42 -0.8
62,529 + Echvi_0063 0.42 +0.3
62,530 - Echvi_0063 0.42 +1.5
62,530 - Echvi_0063 0.42 +0.5
62,530 - Echvi_0063 0.42 -1.0
62,538 + Echvi_0063 0.42 +3.8
62,538 + Echvi_0063 0.42 +0.8
62,551 - Echvi_0063 0.43 -0.3
62,600 + Echvi_0063 0.48 -0.8
62,601 - Echvi_0063 0.48 -0.9
62,602 + Echvi_0063 0.48 -2.5
62,617 - Echvi_0063 0.49 -0.5
62,654 - Echvi_0063 0.52 -0.8
62,657 + Echvi_0063 0.53 -1.1
62,657 + Echvi_0063 0.53 +1.1
62,657 + Echvi_0063 0.53 -1.9
62,658 - Echvi_0063 0.53 +2.0
62,658 - Echvi_0063 0.53 +0.3
62,658 - Echvi_0063 0.53 -1.1
62,658 - Echvi_0063 0.53 -0.8
62,658 - Echvi_0063 0.53 -1.6
62,660 + Echvi_0063 0.53 -1.3
62,702 + Echvi_0063 0.57 -0.4
62,705 - Echvi_0063 0.57 -1.1
62,708 + Echvi_0063 0.57 +0.2
62,708 + Echvi_0063 0.57 +2.6
62,708 + Echvi_0063 0.57 -1.9
62,708 + Echvi_0063 0.57 -0.2
62,708 + Echvi_0063 0.57 +0.5
62,708 + Echvi_0063 0.57 -1.5
62,709 - Echvi_0063 0.57 +1.3
62,709 - Echvi_0063 0.57 +0.3
62,709 - Echvi_0063 0.57 -0.6
62,709 - Echvi_0063 0.57 -1.7
62,712 + Echvi_0063 0.57 -0.6
62,712 + Echvi_0063 0.57 +0.2
62,713 - Echvi_0063 0.57 -1.4
62,744 + Echvi_0063 0.60 +1.6
62,782 - Echvi_0063 0.63 -1.6
62,818 + Echvi_0063 0.67 +0.3
62,830 - Echvi_0063 0.68 -1.5
62,886 + Echvi_0063 0.72 +0.6
62,887 - Echvi_0063 0.73 +0.9
62,887 - Echvi_0063 0.73 -0.7
62,951 + Echvi_0063 0.78 +2.0
62,960 + Echvi_0063 0.79 +1.7
62,960 + Echvi_0063 0.79 -0.5
62,961 - Echvi_0063 0.79 -0.4
62,961 - Echvi_0063 0.79 -1.6
63,004 + Echvi_0063 0.83 -0.6
63,005 - Echvi_0063 0.83 -1.3
63,030 + Echvi_0063 0.85 -0.4
63,062 + Echvi_0063 0.88 +1.3
63,076 + Echvi_0063 0.89 +0.2
63,111 + +0.0
63,150 + -0.0
63,153 + +0.2
63,154 - +0.7
63,154 - -0.1
63,155 + -0.3
63,155 + -1.6
63,156 - +0.4
63,156 - -1.2
63,156 - +0.1
63,156 - -0.6
63,189 + +0.9
63,189 + +1.1
63,195 + -0.2
63,198 + +0.2
63,198 + -2.4
63,198 + -0.8
63,198 + +0.4
63,198 + +1.2
63,198 + +0.6
63,199 - -3.4
63,220 + -0.8
63,227 + -1.0
63,466 - +0.5
63,517 - +0.2
63,517 - +0.1
63,579 + -2.5
63,580 - +1.4
63,737 - -1.0

Or see this region's nucleotide sequence