Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1161

Experiment: m.b. acetate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1159 and B158DRAFT_1160 are separated by 255 nucleotidesB158DRAFT_1160 and B158DRAFT_1161 are separated by 250 nucleotidesB158DRAFT_1161 and B158DRAFT_1162 are separated by 82 nucleotidesB158DRAFT_1162 and B158DRAFT_1163 are separated by 75 nucleotidesB158DRAFT_1163 and B158DRAFT_1164 overlap by 4 nucleotides B158DRAFT_1159: B158DRAFT_1159 - GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit, at 1,196,694 to 1,198,271 _1159 B158DRAFT_1160: B158DRAFT_1160 - tRNA-adenosine deaminase (EC 3.5.4.-), at 1,198,527 to 1,199,006 _1160 B158DRAFT_1161: B158DRAFT_1161 - aspartate kinase (EC 2.7.2.4), at 1,199,257 to 1,201,824 _1161 B158DRAFT_1162: B158DRAFT_1162 - hypothetical protein, at 1,201,907 to 1,202,332 _1162 B158DRAFT_1163: B158DRAFT_1163 - hypothetical protein, at 1,202,408 to 1,202,752 _1163 B158DRAFT_1164: B158DRAFT_1164 - valyl-tRNA synthetase (EC 6.1.1.9), at 1,202,749 to 1,205,520 _1164 Position (kb) 1199 1200 1201 1202Strain fitness (log2 ratio) -1 0 1at 1198.265 kb on + strandat 1198.467 kb on - strandat 1198.483 kb on + strandat 1198.491 kb on - strandat 1199.284 kb on + strandat 1199.397 kb on + strandat 1199.397 kb on + strandat 1199.405 kb on - strandat 1199.417 kb on + strandat 1199.425 kb on - strandat 1199.631 kb on + strand, within B158DRAFT_1161at 1199.631 kb on + strand, within B158DRAFT_1161at 1199.631 kb on + strand, within B158DRAFT_1161at 1199.639 kb on - strand, within B158DRAFT_1161at 1199.639 kb on - strand, within B158DRAFT_1161at 1199.639 kb on - strand, within B158DRAFT_1161at 1199.818 kb on + strand, within B158DRAFT_1161at 1199.865 kb on - strand, within B158DRAFT_1161at 1199.885 kb on + strand, within B158DRAFT_1161at 1199.893 kb on - strand, within B158DRAFT_1161at 1199.914 kb on + strand, within B158DRAFT_1161at 1200.062 kb on + strand, within B158DRAFT_1161at 1200.119 kb on + strand, within B158DRAFT_1161at 1200.127 kb on - strand, within B158DRAFT_1161at 1200.328 kb on - strand, within B158DRAFT_1161at 1200.408 kb on + strand, within B158DRAFT_1161at 1200.449 kb on + strand, within B158DRAFT_1161at 1200.506 kb on + strand, within B158DRAFT_1161at 1200.536 kb on + strand, within B158DRAFT_1161at 1200.590 kb on + strand, within B158DRAFT_1161at 1200.658 kb on - strand, within B158DRAFT_1161at 1200.688 kb on - strand, within B158DRAFT_1161at 1200.730 kb on - strand, within B158DRAFT_1161at 1200.852 kb on - strand, within B158DRAFT_1161at 1200.939 kb on + strand, within B158DRAFT_1161at 1200.997 kb on - strand, within B158DRAFT_1161at 1201.052 kb on - strand, within B158DRAFT_1161at 1201.202 kb on - strand, within B158DRAFT_1161at 1201.270 kb on + strand, within B158DRAFT_1161at 1201.278 kb on - strand, within B158DRAFT_1161at 1201.288 kb on - strand, within B158DRAFT_1161at 1201.288 kb on - strand, within B158DRAFT_1161at 1201.369 kb on + strand, within B158DRAFT_1161at 1201.452 kb on + strand, within B158DRAFT_1161at 1201.457 kb on + strand, within B158DRAFT_1161at 1201.460 kb on - strand, within B158DRAFT_1161at 1201.465 kb on - strand, within B158DRAFT_1161at 1201.585 kb on + strandat 1201.593 kb on - strandat 1201.764 kb on - strandat 1201.796 kb on - strandat 1201.809 kb on + strandat 1201.809 kb on + strandat 1201.819 kb on + strandat 1201.958 kb on + strand, within B158DRAFT_1162at 1202.049 kb on - strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.080 kb on + strand, within B158DRAFT_1162at 1202.088 kb on - strand, within B158DRAFT_1162at 1202.088 kb on - strand, within B158DRAFT_1162at 1202.088 kb on - strand, within B158DRAFT_1162at 1202.088 kb on - strand, within B158DRAFT_1162at 1202.088 kb on - strand, within B158DRAFT_1162at 1202.088 kb on - strand, within B158DRAFT_1162at 1202.088 kb on - strand, within B158DRAFT_1162at 1202.088 kb on - strand, within B158DRAFT_1162at 1202.088 kb on - strand, within B158DRAFT_1162at 1202.088 kb on - strand, within B158DRAFT_1162at 1202.088 kb on - strand, within B158DRAFT_1162at 1202.124 kb on + strand, within B158DRAFT_1162at 1202.124 kb on + strand, within B158DRAFT_1162at 1202.132 kb on - strand, within B158DRAFT_1162at 1202.132 kb on - strand, within B158DRAFT_1162at 1202.132 kb on - strand, within B158DRAFT_1162at 1202.142 kb on - strand, within B158DRAFT_1162at 1202.189 kb on + strand, within B158DRAFT_1162at 1202.189 kb on + strand, within B158DRAFT_1162at 1202.197 kb on - strand, within B158DRAFT_1162at 1202.227 kb on - strand, within B158DRAFT_1162at 1202.319 kb on - strandat 1202.413 kb on + strandat 1202.474 kb on + strand, within B158DRAFT_1163at 1202.482 kb on - strand, within B158DRAFT_1163at 1202.543 kb on - strand, within B158DRAFT_1163at 1202.599 kb on - strand, within B158DRAFT_1163at 1202.634 kb on + strand, within B158DRAFT_1163at 1202.642 kb on - strand, within B158DRAFT_1163at 1202.642 kb on - strand, within B158DRAFT_1163at 1202.648 kb on + strand, within B158DRAFT_1163

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 150 mM
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1,198,265 + -0.2
1,198,467 - -0.7
1,198,483 + -0.2
1,198,491 - +0.6
1,199,284 + -0.3
1,199,397 + +0.1
1,199,397 + +0.1
1,199,405 - -0.4
1,199,417 + -0.6
1,199,425 - +0.1
1,199,631 + B158DRAFT_1161 0.15 +0.3
1,199,631 + B158DRAFT_1161 0.15 -0.7
1,199,631 + B158DRAFT_1161 0.15 -0.4
1,199,639 - B158DRAFT_1161 0.15 -0.8
1,199,639 - B158DRAFT_1161 0.15 +0.1
1,199,639 - B158DRAFT_1161 0.15 -0.1
1,199,818 + B158DRAFT_1161 0.22 -0.1
1,199,865 - B158DRAFT_1161 0.24 -0.4
1,199,885 + B158DRAFT_1161 0.24 -0.3
1,199,893 - B158DRAFT_1161 0.25 -0.0
1,199,914 + B158DRAFT_1161 0.26 -0.0
1,200,062 + B158DRAFT_1161 0.31 -0.4
1,200,119 + B158DRAFT_1161 0.34 -0.4
1,200,127 - B158DRAFT_1161 0.34 -0.4
1,200,328 - B158DRAFT_1161 0.42 -0.3
1,200,408 + B158DRAFT_1161 0.45 +0.1
1,200,449 + B158DRAFT_1161 0.46 +0.0
1,200,506 + B158DRAFT_1161 0.49 -0.3
1,200,536 + B158DRAFT_1161 0.50 -0.1
1,200,590 + B158DRAFT_1161 0.52 +0.8
1,200,658 - B158DRAFT_1161 0.55 -0.3
1,200,688 - B158DRAFT_1161 0.56 -0.3
1,200,730 - B158DRAFT_1161 0.57 -0.4
1,200,852 - B158DRAFT_1161 0.62 -0.3
1,200,939 + B158DRAFT_1161 0.65 -0.4
1,200,997 - B158DRAFT_1161 0.68 -0.3
1,201,052 - B158DRAFT_1161 0.70 -0.0
1,201,202 - B158DRAFT_1161 0.76 -0.1
1,201,270 + B158DRAFT_1161 0.78 -0.7
1,201,278 - B158DRAFT_1161 0.79 -0.3
1,201,288 - B158DRAFT_1161 0.79 -0.2
1,201,288 - B158DRAFT_1161 0.79 -1.6
1,201,369 + B158DRAFT_1161 0.82 -0.2
1,201,452 + B158DRAFT_1161 0.85 -0.1
1,201,457 + B158DRAFT_1161 0.86 -0.3
1,201,460 - B158DRAFT_1161 0.86 +0.7
1,201,465 - B158DRAFT_1161 0.86 -0.5
1,201,585 + -0.7
1,201,593 - -0.6
1,201,764 - -0.0
1,201,796 - -0.0
1,201,809 + +0.0
1,201,809 + +0.4
1,201,819 + -0.9
1,201,958 + B158DRAFT_1162 0.12 -0.7
1,202,049 - B158DRAFT_1162 0.33 +0.1
1,202,080 + B158DRAFT_1162 0.41 -0.2
1,202,080 + B158DRAFT_1162 0.41 +0.2
1,202,080 + B158DRAFT_1162 0.41 +0.1
1,202,080 + B158DRAFT_1162 0.41 +0.1
1,202,080 + B158DRAFT_1162 0.41 +0.5
1,202,080 + B158DRAFT_1162 0.41 -0.6
1,202,080 + B158DRAFT_1162 0.41 -1.3
1,202,080 + B158DRAFT_1162 0.41 -0.1
1,202,080 + B158DRAFT_1162 0.41 -1.2
1,202,080 + B158DRAFT_1162 0.41 +0.5
1,202,080 + B158DRAFT_1162 0.41 +0.1
1,202,080 + B158DRAFT_1162 0.41 -0.1
1,202,080 + B158DRAFT_1162 0.41 +0.3
1,202,080 + B158DRAFT_1162 0.41 -0.1
1,202,080 + B158DRAFT_1162 0.41 -0.3
1,202,080 + B158DRAFT_1162 0.41 -0.2
1,202,080 + B158DRAFT_1162 0.41 +0.2
1,202,080 + B158DRAFT_1162 0.41 -0.5
1,202,080 + B158DRAFT_1162 0.41 -0.5
1,202,088 - B158DRAFT_1162 0.42 -0.1
1,202,088 - B158DRAFT_1162 0.42 +0.4
1,202,088 - B158DRAFT_1162 0.42 +0.2
1,202,088 - B158DRAFT_1162 0.42 -0.2
1,202,088 - B158DRAFT_1162 0.42 -0.6
1,202,088 - B158DRAFT_1162 0.42 +0.1
1,202,088 - B158DRAFT_1162 0.42 -0.7
1,202,088 - B158DRAFT_1162 0.42 -0.2
1,202,088 - B158DRAFT_1162 0.42 -1.3
1,202,088 - B158DRAFT_1162 0.42 -0.1
1,202,088 - B158DRAFT_1162 0.42 -0.4
1,202,124 + B158DRAFT_1162 0.51 -0.5
1,202,124 + B158DRAFT_1162 0.51 -0.4
1,202,132 - B158DRAFT_1162 0.53 +0.1
1,202,132 - B158DRAFT_1162 0.53 -0.1
1,202,132 - B158DRAFT_1162 0.53 -0.2
1,202,142 - B158DRAFT_1162 0.55 -0.4
1,202,189 + B158DRAFT_1162 0.66 +0.0
1,202,189 + B158DRAFT_1162 0.66 -0.1
1,202,197 - B158DRAFT_1162 0.68 +0.1
1,202,227 - B158DRAFT_1162 0.75 -0.4
1,202,319 - -0.4
1,202,413 + -0.7
1,202,474 + B158DRAFT_1163 0.19 -0.1
1,202,482 - B158DRAFT_1163 0.21 +0.1
1,202,543 - B158DRAFT_1163 0.39 +0.2
1,202,599 - B158DRAFT_1163 0.55 -0.3
1,202,634 + B158DRAFT_1163 0.66 +0.3
1,202,642 - B158DRAFT_1163 0.68 -0.5
1,202,642 - B158DRAFT_1163 0.68 -0.1
1,202,648 + B158DRAFT_1163 0.70 -0.7

Or see this region's nucleotide sequence