Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0935

Experiment: m.b. acetate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0933 and B158DRAFT_0934 are separated by 1 nucleotidesB158DRAFT_0934 and B158DRAFT_0935 overlap by 7 nucleotidesB158DRAFT_0935 and B158DRAFT_0936 are separated by 132 nucleotides B158DRAFT_0933: B158DRAFT_0933 - Na+/proline symporter, at 961,123 to 962,544 _0933 B158DRAFT_0934: B158DRAFT_0934 - hypothetical protein, at 962,546 to 962,668 _0934 B158DRAFT_0935: B158DRAFT_0935 - Aspartate carbamoyltransferase, catalytic chain, at 962,662 to 963,732 _0935 B158DRAFT_0936: B158DRAFT_0936 - asparagine synthase (glutamine-hydrolyzing), at 963,865 to 965,877 _0936 Position (kb) 962 963 964Strain fitness (log2 ratio) -1 0 1at 961.705 kb on + strand, within B158DRAFT_0933at 961.785 kb on - strand, within B158DRAFT_0933at 961.785 kb on - strand, within B158DRAFT_0933at 962.017 kb on + strand, within B158DRAFT_0933at 962.025 kb on - strand, within B158DRAFT_0933at 962.066 kb on - strand, within B158DRAFT_0933at 962.140 kb on - strand, within B158DRAFT_0933at 962.172 kb on - strand, within B158DRAFT_0933at 962.207 kb on - strand, within B158DRAFT_0933at 962.258 kb on - strand, within B158DRAFT_0933at 962.259 kb on + strand, within B158DRAFT_0933at 962.259 kb on + strand, within B158DRAFT_0933at 962.275 kb on - strand, within B158DRAFT_0933at 962.382 kb on - strand, within B158DRAFT_0933at 962.465 kb on + strandat 962.473 kb on - strandat 962.594 kb on + strand, within B158DRAFT_0934at 962.602 kb on - strand, within B158DRAFT_0934at 962.604 kb on + strand, within B158DRAFT_0934at 962.627 kb on + strand, within B158DRAFT_0934at 962.646 kb on + strand, within B158DRAFT_0934at 962.654 kb on - strand, within B158DRAFT_0934at 962.733 kb on + strandat 962.733 kb on + strandat 962.733 kb on + strandat 962.733 kb on + strandat 962.891 kb on - strand, within B158DRAFT_0935at 962.921 kb on - strand, within B158DRAFT_0935at 962.973 kb on - strand, within B158DRAFT_0935at 963.080 kb on + strand, within B158DRAFT_0935at 963.080 kb on + strand, within B158DRAFT_0935at 963.080 kb on + strand, within B158DRAFT_0935at 963.080 kb on + strand, within B158DRAFT_0935at 963.080 kb on + strand, within B158DRAFT_0935at 963.080 kb on + strand, within B158DRAFT_0935at 963.080 kb on + strand, within B158DRAFT_0935at 963.080 kb on + strand, within B158DRAFT_0935at 963.080 kb on + strand, within B158DRAFT_0935at 963.088 kb on - strand, within B158DRAFT_0935at 963.088 kb on - strand, within B158DRAFT_0935at 963.088 kb on - strand, within B158DRAFT_0935at 963.088 kb on - strand, within B158DRAFT_0935at 963.088 kb on - strand, within B158DRAFT_0935at 963.088 kb on - strand, within B158DRAFT_0935at 963.088 kb on - strand, within B158DRAFT_0935at 963.088 kb on - strand, within B158DRAFT_0935at 963.088 kb on - strand, within B158DRAFT_0935at 963.088 kb on - strand, within B158DRAFT_0935at 963.186 kb on + strand, within B158DRAFT_0935at 963.285 kb on + strand, within B158DRAFT_0935at 963.285 kb on + strand, within B158DRAFT_0935at 963.295 kb on + strand, within B158DRAFT_0935at 963.303 kb on - strand, within B158DRAFT_0935at 963.596 kb on + strand, within B158DRAFT_0935at 963.596 kb on + strand, within B158DRAFT_0935at 963.604 kb on - strand, within B158DRAFT_0935at 963.604 kb on - strand, within B158DRAFT_0935at 963.682 kb on + strandat 963.682 kb on + strandat 963.682 kb on + strandat 963.743 kb on + strandat 963.816 kb on - strandat 964.003 kb on + strandat 964.003 kb on + strandat 964.011 kb on - strandat 964.011 kb on - strandat 964.011 kb on - strandat 964.026 kb on - strandat 964.368 kb on - strand, within B158DRAFT_0936at 964.414 kb on + strand, within B158DRAFT_0936at 964.414 kb on + strand, within B158DRAFT_0936at 964.552 kb on + strand, within B158DRAFT_0936at 964.642 kb on + strand, within B158DRAFT_0936at 964.642 kb on + strand, within B158DRAFT_0936at 964.730 kb on - strand, within B158DRAFT_0936

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 150 mM
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961,705 + B158DRAFT_0933 0.41 +0.1
961,785 - B158DRAFT_0933 0.47 +0.0
961,785 - B158DRAFT_0933 0.47 +0.1
962,017 + B158DRAFT_0933 0.63 -1.2
962,025 - B158DRAFT_0933 0.63 -1.1
962,066 - B158DRAFT_0933 0.66 -0.3
962,140 - B158DRAFT_0933 0.72 -0.1
962,172 - B158DRAFT_0933 0.74 -0.6
962,207 - B158DRAFT_0933 0.76 +0.2
962,258 - B158DRAFT_0933 0.80 +0.0
962,259 + B158DRAFT_0933 0.80 -0.2
962,259 + B158DRAFT_0933 0.80 +0.3
962,275 - B158DRAFT_0933 0.81 +0.2
962,382 - B158DRAFT_0933 0.89 +0.3
962,465 + -0.5
962,473 - +0.3
962,594 + B158DRAFT_0934 0.39 +0.2
962,602 - B158DRAFT_0934 0.46 -0.1
962,604 + B158DRAFT_0934 0.47 -0.1
962,627 + B158DRAFT_0934 0.66 -0.5
962,646 + B158DRAFT_0934 0.81 +0.5
962,654 - B158DRAFT_0934 0.88 +0.1
962,733 + +0.0
962,733 + +0.8
962,733 + +0.1
962,733 + +0.4
962,891 - B158DRAFT_0935 0.21 -0.0
962,921 - B158DRAFT_0935 0.24 -0.4
962,973 - B158DRAFT_0935 0.29 +0.0
963,080 + B158DRAFT_0935 0.39 +0.2
963,080 + B158DRAFT_0935 0.39 -0.1
963,080 + B158DRAFT_0935 0.39 +0.0
963,080 + B158DRAFT_0935 0.39 +0.5
963,080 + B158DRAFT_0935 0.39 -0.1
963,080 + B158DRAFT_0935 0.39 +0.2
963,080 + B158DRAFT_0935 0.39 +0.1
963,080 + B158DRAFT_0935 0.39 -0.2
963,080 + B158DRAFT_0935 0.39 -0.5
963,088 - B158DRAFT_0935 0.40 -0.1
963,088 - B158DRAFT_0935 0.40 -0.8
963,088 - B158DRAFT_0935 0.40 -0.2
963,088 - B158DRAFT_0935 0.40 -0.7
963,088 - B158DRAFT_0935 0.40 -0.9
963,088 - B158DRAFT_0935 0.40 -0.1
963,088 - B158DRAFT_0935 0.40 -0.5
963,088 - B158DRAFT_0935 0.40 -0.1
963,088 - B158DRAFT_0935 0.40 -0.0
963,088 - B158DRAFT_0935 0.40 +0.0
963,186 + B158DRAFT_0935 0.49 +0.2
963,285 + B158DRAFT_0935 0.58 +0.0
963,285 + B158DRAFT_0935 0.58 -0.4
963,295 + B158DRAFT_0935 0.59 +0.0
963,303 - B158DRAFT_0935 0.60 -0.1
963,596 + B158DRAFT_0935 0.87 -0.3
963,596 + B158DRAFT_0935 0.87 +0.4
963,604 - B158DRAFT_0935 0.88 -0.3
963,604 - B158DRAFT_0935 0.88 -0.0
963,682 + +0.0
963,682 + -0.1
963,682 + +0.2
963,743 + -0.4
963,816 - -0.2
964,003 + -0.2
964,003 + -0.9
964,011 - +1.1
964,011 - -0.4
964,011 - -1.5
964,026 - -0.3
964,368 - B158DRAFT_0936 0.25 -0.0
964,414 + B158DRAFT_0936 0.27 -0.4
964,414 + B158DRAFT_0936 0.27 -0.2
964,552 + B158DRAFT_0936 0.34 -0.3
964,642 + B158DRAFT_0936 0.39 +0.5
964,642 + B158DRAFT_0936 0.39 -0.8
964,730 - B158DRAFT_0936 0.43 -1.3

Or see this region's nucleotide sequence