Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3741 and Atu3742 are separated by 590 nucleotides Atu3742 and Atu3743 are separated by 153 nucleotides Atu3743 and Atu3744 are separated by 261 nucleotides
Atu3741: Atu3741 - MFS permease, at 823,147 to 824,436
Atu3741
Atu3742: Atu3742 - hypothetical protein, at 825,027 to 825,542
Atu3742
Atu3743: Atu3743 - 50S ribosomal protein L31, at 825,696 to 825,917
Atu3743
Atu3744: Atu3744 - ABC transporter permease, at 826,179 to 827,978
Atu3744
Position (kb) 825
826 Strain fitness (log2 ratio) -1
0
1
2 at 824.059 kb on + strand, within Atu3741 at 824.077 kb on + strand, within Atu3741 at 824.185 kb on + strand, within Atu3741 at 824.193 kb on - strand, within Atu3741 at 824.193 kb on - strand, within Atu3741 at 824.203 kb on - strand, within Atu3741 at 824.222 kb on - strand, within Atu3741 at 824.360 kb on + strand at 824.360 kb on + strand at 824.366 kb on + strand at 824.483 kb on - strand at 824.491 kb on + strand at 824.653 kb on - strand at 824.835 kb on - strand at 825.616 kb on + strand at 825.622 kb on - strand at 826.168 kb on + strand at 826.168 kb on + strand at 826.168 kb on + strand at 826.257 kb on - strand at 826.269 kb on - strand at 826.441 kb on - strand, within Atu3744 at 826.522 kb on - strand, within Atu3744
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 824,059 + Atu3741 0.71 -0.8 824,077 + Atu3741 0.72 +0.2 824,185 + Atu3741 0.80 +0.1 824,193 - Atu3741 0.81 -0.4 824,193 - Atu3741 0.81 +0.2 824,203 - Atu3741 0.82 +0.0 824,222 - Atu3741 0.83 -0.2 824,360 + +0.3 824,360 + +0.6 824,366 + +0.2 824,483 - +2.3 824,491 + +0.5 824,653 - -0.1 824,835 - +1.2 825,616 + +0.4 825,622 - -0.0 826,168 + -0.1 826,168 + -1.0 826,168 + +0.1 826,257 - +0.7 826,269 - +0.1 826,441 - Atu3744 0.15 -0.3 826,522 - Atu3744 0.19 -0.1
Or see this region's nucleotide sequence