Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_890

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_888 and PfGW456L13_889 are separated by 150 nucleotidesPfGW456L13_889 and PfGW456L13_890 are separated by 142 nucleotidesPfGW456L13_890 and PfGW456L13_891 are separated by 195 nucleotidesPfGW456L13_891 and PfGW456L13_892 are separated by 35 nucleotides PfGW456L13_888 - Quinone oxidoreductase (EC 1.6.5.5), at 997,985 to 998,962 _888 PfGW456L13_889 - Flagellar biosynthesis protein FliL, at 999,113 to 999,520 _889 PfGW456L13_890 - FIG006231: RNA-binding protein, at 999,663 to 1,000,115 _890 PfGW456L13_891 - FIG00953390: hypothetical protein, at 1,000,311 to 1,000,466 _891 PfGW456L13_892 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 1,000,502 to 1,001,107 _892 Position (kb) 999 1000 1001Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 998.811 kb on + strand, within PfGW456L13_888at 998.811 kb on + strand, within PfGW456L13_888at 998.811 kb on + strand, within PfGW456L13_888at 998.812 kb on - strand, within PfGW456L13_888at 998.812 kb on - strand, within PfGW456L13_888at 998.812 kb on - strand, within PfGW456L13_888at 998.969 kb on + strandat 998.969 kb on + strandat 998.993 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 998.999 kb on + strandat 999.000 kb on - strandat 999.000 kb on - strandat 999.000 kb on - strandat 999.000 kb on - strandat 999.000 kb on - strandat 999.000 kb on - strandat 999.000 kb on - strandat 999.042 kb on + strandat 999.043 kb on - strandat 999.052 kb on + strandat 999.052 kb on + strandat 999.052 kb on + strandat 999.053 kb on - strandat 999.053 kb on - strandat 999.080 kb on - strandat 999.085 kb on - strandat 999.100 kb on + strandat 999.206 kb on + strand, within PfGW456L13_889at 999.206 kb on + strand, within PfGW456L13_889at 999.206 kb on + strand, within PfGW456L13_889at 999.206 kb on + strand, within PfGW456L13_889at 999.206 kb on + strand, within PfGW456L13_889at 999.206 kb on + strand, within PfGW456L13_889at 999.206 kb on + strand, within PfGW456L13_889at 999.206 kb on + strand, within PfGW456L13_889at 999.206 kb on + strand, within PfGW456L13_889at 999.206 kb on + strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.207 kb on - strand, within PfGW456L13_889at 999.236 kb on - strand, within PfGW456L13_889at 999.239 kb on + strand, within PfGW456L13_889at 999.239 kb on + strand, within PfGW456L13_889at 999.239 kb on + strand, within PfGW456L13_889at 999.240 kb on - strand, within PfGW456L13_889at 999.240 kb on - strand, within PfGW456L13_889at 999.240 kb on - strand, within PfGW456L13_889at 999.240 kb on - strand, within PfGW456L13_889at 999.240 kb on - strand, within PfGW456L13_889at 999.272 kb on + strand, within PfGW456L13_889at 999.272 kb on + strand, within PfGW456L13_889at 999.272 kb on + strand, within PfGW456L13_889at 999.272 kb on + strand, within PfGW456L13_889at 999.272 kb on + strand, within PfGW456L13_889at 999.273 kb on - strand, within PfGW456L13_889at 999.273 kb on - strand, within PfGW456L13_889at 999.273 kb on - strand, within PfGW456L13_889at 999.273 kb on - strand, within PfGW456L13_889at 999.273 kb on - strand, within PfGW456L13_889at 999.519 kb on - strandat 999.519 kb on - strandat 999.778 kb on + strand, within PfGW456L13_890at 999.779 kb on - strand, within PfGW456L13_890at 999.819 kb on + strand, within PfGW456L13_890at 999.819 kb on + strand, within PfGW456L13_890at 999.819 kb on + strand, within PfGW456L13_890at 999.819 kb on + strand, within PfGW456L13_890at 999.819 kb on + strand, within PfGW456L13_890at 999.820 kb on - strand, within PfGW456L13_890at 999.820 kb on - strand, within PfGW456L13_890at 999.820 kb on - strand, within PfGW456L13_890at 999.820 kb on - strand, within PfGW456L13_890at 999.820 kb on - strand, within PfGW456L13_890at 999.820 kb on - strand, within PfGW456L13_890at 999.845 kb on + strand, within PfGW456L13_890at 999.860 kb on + strand, within PfGW456L13_890at 999.871 kb on + strand, within PfGW456L13_890at 999.967 kb on + strand, within PfGW456L13_890at 999.968 kb on - strand, within PfGW456L13_890at 1000.021 kb on + strand, within PfGW456L13_890at 1000.232 kb on + strandat 1000.257 kb on + strandat 1000.330 kb on + strand, within PfGW456L13_891at 1000.331 kb on - strand, within PfGW456L13_891at 1000.331 kb on - strand, within PfGW456L13_891at 1000.331 kb on - strand, within PfGW456L13_891at 1000.334 kb on - strand, within PfGW456L13_891at 1000.334 kb on - strand, within PfGW456L13_891at 1000.393 kb on + strand, within PfGW456L13_891at 1000.394 kb on - strand, within PfGW456L13_891at 1000.394 kb on - strand, within PfGW456L13_891at 1000.394 kb on - strand, within PfGW456L13_891at 1000.512 kb on + strandat 1000.515 kb on + strandat 1000.516 kb on - strandat 1000.516 kb on - strandat 1000.516 kb on - strandat 1000.516 kb on - strandat 1000.516 kb on - strandat 1000.647 kb on + strand, within PfGW456L13_892at 1000.648 kb on - strand, within PfGW456L13_892at 1000.665 kb on + strand, within PfGW456L13_892at 1000.666 kb on - strand, within PfGW456L13_892at 1000.786 kb on + strand, within PfGW456L13_892at 1000.872 kb on - strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.875 kb on + strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.876 kb on - strand, within PfGW456L13_892at 1000.948 kb on - strand, within PfGW456L13_892at 1000.948 kb on - strand, within PfGW456L13_892at 1001.001 kb on + strand, within PfGW456L13_892at 1001.001 kb on + strand, within PfGW456L13_892at 1001.002 kb on - strand, within PfGW456L13_892at 1001.002 kb on - strand, within PfGW456L13_892at 1001.002 kb on - strand, within PfGW456L13_892at 1001.002 kb on - strand, within PfGW456L13_892at 1001.109 kb on + strandat 1001.109 kb on + strandat 1001.109 kb on + strandat 1001.109 kb on + strandat 1001.110 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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998,811 + PfGW456L13_888 0.84 +0.8
998,811 + PfGW456L13_888 0.84 -0.8
998,811 + PfGW456L13_888 0.84 -0.1
998,812 - PfGW456L13_888 0.85 -0.5
998,812 - PfGW456L13_888 0.85 -1.4
998,812 - PfGW456L13_888 0.85 +0.4
998,969 + +0.1
998,969 + -0.0
998,993 + +1.3
998,999 + -0.7
998,999 + -0.1
998,999 + +0.4
998,999 + -0.1
998,999 + -0.2
998,999 + +0.8
998,999 + -0.9
998,999 + -1.2
998,999 + -0.2
998,999 + -0.0
998,999 + -0.6
998,999 + +0.3
998,999 + +0.3
998,999 + +0.4
998,999 + -0.5
998,999 + +0.0
998,999 + -0.7
998,999 + -0.4
998,999 + -1.3
999,000 - -0.2
999,000 - +0.0
999,000 - +0.7
999,000 - -0.3
999,000 - -0.1
999,000 - +0.1
999,000 - +0.2
999,042 + +0.2
999,043 - -0.3
999,052 + -0.4
999,052 + +0.9
999,052 + -0.2
999,053 - -0.2
999,053 - -1.1
999,080 - -0.3
999,085 - -0.0
999,100 + +0.5
999,206 + PfGW456L13_889 0.23 -0.1
999,206 + PfGW456L13_889 0.23 -1.0
999,206 + PfGW456L13_889 0.23 -0.4
999,206 + PfGW456L13_889 0.23 -0.3
999,206 + PfGW456L13_889 0.23 +0.9
999,206 + PfGW456L13_889 0.23 +0.9
999,206 + PfGW456L13_889 0.23 -0.8
999,206 + PfGW456L13_889 0.23 -0.3
999,206 + PfGW456L13_889 0.23 +1.2
999,206 + PfGW456L13_889 0.23 +0.3
999,207 - PfGW456L13_889 0.23 +0.7
999,207 - PfGW456L13_889 0.23 -0.9
999,207 - PfGW456L13_889 0.23 -0.2
999,207 - PfGW456L13_889 0.23 -1.0
999,207 - PfGW456L13_889 0.23 +1.0
999,207 - PfGW456L13_889 0.23 -0.0
999,207 - PfGW456L13_889 0.23 -0.7
999,207 - PfGW456L13_889 0.23 -1.5
999,207 - PfGW456L13_889 0.23 -1.5
999,207 - PfGW456L13_889 0.23 -0.3
999,207 - PfGW456L13_889 0.23 +0.8
999,207 - PfGW456L13_889 0.23 +0.3
999,236 - PfGW456L13_889 0.30 +0.8
999,239 + PfGW456L13_889 0.31 -0.3
999,239 + PfGW456L13_889 0.31 +1.3
999,239 + PfGW456L13_889 0.31 +0.5
999,240 - PfGW456L13_889 0.31 +0.2
999,240 - PfGW456L13_889 0.31 +0.3
999,240 - PfGW456L13_889 0.31 -0.8
999,240 - PfGW456L13_889 0.31 -2.3
999,240 - PfGW456L13_889 0.31 +0.6
999,272 + PfGW456L13_889 0.39 +0.1
999,272 + PfGW456L13_889 0.39 +0.4
999,272 + PfGW456L13_889 0.39 +0.3
999,272 + PfGW456L13_889 0.39 +0.4
999,272 + PfGW456L13_889 0.39 +1.6
999,273 - PfGW456L13_889 0.39 +0.3
999,273 - PfGW456L13_889 0.39 -0.2
999,273 - PfGW456L13_889 0.39 -0.1
999,273 - PfGW456L13_889 0.39 -0.8
999,273 - PfGW456L13_889 0.39 +0.0
999,519 - +1.0
999,519 - -0.8
999,778 + PfGW456L13_890 0.25 -0.2
999,779 - PfGW456L13_890 0.26 +0.3
999,819 + PfGW456L13_890 0.34 +1.4
999,819 + PfGW456L13_890 0.34 +0.8
999,819 + PfGW456L13_890 0.34 +0.0
999,819 + PfGW456L13_890 0.34 +0.5
999,819 + PfGW456L13_890 0.34 -0.7
999,820 - PfGW456L13_890 0.35 -0.5
999,820 - PfGW456L13_890 0.35 -1.5
999,820 - PfGW456L13_890 0.35 +1.7
999,820 - PfGW456L13_890 0.35 +0.9
999,820 - PfGW456L13_890 0.35 +0.7
999,820 - PfGW456L13_890 0.35 -0.1
999,845 + PfGW456L13_890 0.40 +0.5
999,860 + PfGW456L13_890 0.43 +0.3
999,871 + PfGW456L13_890 0.46 -0.8
999,967 + PfGW456L13_890 0.67 +0.8
999,968 - PfGW456L13_890 0.67 -0.3
1,000,021 + PfGW456L13_890 0.79 +0.5
1,000,232 + -0.0
1,000,257 + +0.7
1,000,330 + PfGW456L13_891 0.12 +1.0
1,000,331 - PfGW456L13_891 0.13 +0.3
1,000,331 - PfGW456L13_891 0.13 -0.9
1,000,331 - PfGW456L13_891 0.13 -0.3
1,000,334 - PfGW456L13_891 0.15 -0.3
1,000,334 - PfGW456L13_891 0.15 -0.0
1,000,393 + PfGW456L13_891 0.53 +0.2
1,000,394 - PfGW456L13_891 0.53 -0.2
1,000,394 - PfGW456L13_891 0.53 -0.8
1,000,394 - PfGW456L13_891 0.53 -0.1
1,000,512 + +0.0
1,000,515 + -2.7
1,000,516 - -3.6
1,000,516 - -4.2
1,000,516 - -2.7
1,000,516 - -3.0
1,000,516 - -0.9
1,000,647 + PfGW456L13_892 0.24 -2.5
1,000,648 - PfGW456L13_892 0.24 -2.3
1,000,665 + PfGW456L13_892 0.27 -2.0
1,000,666 - PfGW456L13_892 0.27 -2.5
1,000,786 + PfGW456L13_892 0.47 -1.8
1,000,872 - PfGW456L13_892 0.61 -3.5
1,000,875 + PfGW456L13_892 0.62 -1.1
1,000,875 + PfGW456L13_892 0.62 -1.8
1,000,875 + PfGW456L13_892 0.62 -3.2
1,000,875 + PfGW456L13_892 0.62 -1.8
1,000,875 + PfGW456L13_892 0.62 -3.1
1,000,875 + PfGW456L13_892 0.62 -3.0
1,000,875 + PfGW456L13_892 0.62 -2.1
1,000,875 + PfGW456L13_892 0.62 -3.3
1,000,875 + PfGW456L13_892 0.62 -3.2
1,000,875 + PfGW456L13_892 0.62 +0.0
1,000,875 + PfGW456L13_892 0.62 -2.4
1,000,875 + PfGW456L13_892 0.62 -1.2
1,000,875 + PfGW456L13_892 0.62 -3.7
1,000,876 - PfGW456L13_892 0.62 -2.9
1,000,876 - PfGW456L13_892 0.62 -3.7
1,000,876 - PfGW456L13_892 0.62 -2.0
1,000,876 - PfGW456L13_892 0.62 -2.7
1,000,876 - PfGW456L13_892 0.62 -1.0
1,000,876 - PfGW456L13_892 0.62 -1.1
1,000,876 - PfGW456L13_892 0.62 -0.8
1,000,876 - PfGW456L13_892 0.62 -3.3
1,000,876 - PfGW456L13_892 0.62 -2.5
1,000,876 - PfGW456L13_892 0.62 -3.0
1,000,876 - PfGW456L13_892 0.62 -4.5
1,000,876 - PfGW456L13_892 0.62 -4.2
1,000,876 - PfGW456L13_892 0.62 -1.9
1,000,876 - PfGW456L13_892 0.62 -2.2
1,000,876 - PfGW456L13_892 0.62 -2.2
1,000,948 - PfGW456L13_892 0.74 -2.7
1,000,948 - PfGW456L13_892 0.74 -2.8
1,001,001 + PfGW456L13_892 0.82 -2.3
1,001,001 + PfGW456L13_892 0.82 -1.1
1,001,002 - PfGW456L13_892 0.83 -2.8
1,001,002 - PfGW456L13_892 0.83 -3.1
1,001,002 - PfGW456L13_892 0.83 -1.9
1,001,002 - PfGW456L13_892 0.83 +0.5
1,001,109 + -1.1
1,001,109 + -2.0
1,001,109 + -0.4
1,001,109 + -2.4
1,001,110 - +1.0

Or see this region's nucleotide sequence