Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_848

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_845 and PfGW456L13_846 are separated by 12 nucleotidesPfGW456L13_846 and PfGW456L13_847 overlap by 18 nucleotidesPfGW456L13_847 and PfGW456L13_848 overlap by 1 nucleotidesPfGW456L13_848 and PfGW456L13_849 are separated by 490 nucleotidesPfGW456L13_849 and PfGW456L13_850 are separated by 7 nucleotides PfGW456L13_845 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 952,260 to 953,507 _845 PfGW456L13_846 - Lipoprotein LppL-related protein, at 953,520 to 953,645 _846 PfGW456L13_847 - hypothetical protein, at 953,628 to 953,906 _847 PfGW456L13_848 - Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly, at 953,906 to 954,238 _848 PfGW456L13_849 - Regulator of nucleoside diphosphate kinase, at 954,729 to 955,139 _849 PfGW456L13_850 - Adenylate cyclase (EC 4.6.1.1), at 955,147 to 957,990 _850 Position (kb) 953 954 955Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 953.026 kb on + strand, within PfGW456L13_845at 953.339 kb on - strand, within PfGW456L13_845at 953.377 kb on + strand, within PfGW456L13_845at 953.378 kb on - strand, within PfGW456L13_845at 953.387 kb on - strandat 953.387 kb on - strandat 953.387 kb on - strandat 953.387 kb on - strandat 953.419 kb on + strandat 953.419 kb on + strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.429 kb on + strandat 953.492 kb on - strandat 953.495 kb on + strandat 953.496 kb on - strandat 953.496 kb on - strandat 953.496 kb on - strandat 953.518 kb on + strandat 953.518 kb on + strandat 953.518 kb on + strandat 953.519 kb on - strandat 953.519 kb on - strandat 953.519 kb on - strandat 953.522 kb on - strandat 953.522 kb on - strandat 953.522 kb on - strandat 953.527 kb on + strandat 953.527 kb on + strandat 953.528 kb on - strandat 953.528 kb on - strandat 953.528 kb on - strandat 953.720 kb on - strand, within PfGW456L13_847at 953.720 kb on - strand, within PfGW456L13_847at 953.720 kb on - strand, within PfGW456L13_847at 953.734 kb on - strand, within PfGW456L13_847at 953.735 kb on + strand, within PfGW456L13_847at 953.759 kb on - strand, within PfGW456L13_847at 953.830 kb on - strand, within PfGW456L13_847at 953.858 kb on + strand, within PfGW456L13_847at 953.859 kb on - strand, within PfGW456L13_847at 954.122 kb on + strand, within PfGW456L13_848at 954.190 kb on + strand, within PfGW456L13_848at 954.190 kb on + strand, within PfGW456L13_848at 954.191 kb on - strand, within PfGW456L13_848at 954.191 kb on - strand, within PfGW456L13_848at 954.283 kb on - strandat 954.283 kb on - strandat 954.380 kb on + strandat 954.380 kb on + strandat 954.381 kb on - strandat 954.381 kb on - strandat 954.381 kb on - strandat 954.413 kb on + strandat 954.413 kb on + strandat 954.414 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.573 kb on + strandat 954.573 kb on + strandat 954.573 kb on + strandat 954.573 kb on + strandat 954.574 kb on - strandat 954.574 kb on - strandat 954.608 kb on - strandat 954.608 kb on - strandat 954.610 kb on - strandat 954.627 kb on - strandat 954.939 kb on + strand, within PfGW456L13_849at 954.940 kb on - strand, within PfGW456L13_849at 954.940 kb on - strand, within PfGW456L13_849at 954.940 kb on - strand, within PfGW456L13_849at 955.205 kb on + strandat 955.205 kb on + strandat 955.206 kb on - strandat 955.206 kb on - strandat 955.206 kb on - strandat 955.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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952,963 + PfGW456L13_845 0.56 -1.9
952,963 + PfGW456L13_845 0.56 -1.4
952,963 + PfGW456L13_845 0.56 -1.4
952,963 + PfGW456L13_845 0.56 -1.0
952,964 - PfGW456L13_845 0.56 -1.4
952,964 - PfGW456L13_845 0.56 -2.3
952,964 - PfGW456L13_845 0.56 -1.8
952,964 - PfGW456L13_845 0.56 -2.2
952,964 - PfGW456L13_845 0.56 -3.5
952,964 - PfGW456L13_845 0.56 -2.3
952,964 - PfGW456L13_845 0.56 -2.0
952,964 - PfGW456L13_845 0.56 -3.1
953,026 + PfGW456L13_845 0.61 -2.3
953,339 - PfGW456L13_845 0.86 -2.5
953,377 + PfGW456L13_845 0.90 -1.7
953,378 - PfGW456L13_845 0.90 -3.0
953,387 - -1.0
953,387 - -2.0
953,387 - -1.0
953,387 - -2.8
953,419 + -0.5
953,419 + -1.0
953,420 - -0.2
953,420 - -2.0
953,420 - -2.4
953,420 - -3.5
953,420 - -1.7
953,420 - -2.2
953,429 + -1.3
953,492 - -1.5
953,495 + -1.5
953,496 - -2.5
953,496 - -1.9
953,496 - -1.3
953,518 + +0.0
953,518 + -1.8
953,518 + +0.0
953,519 - -2.1
953,519 - +0.0
953,519 - -1.2
953,522 - -0.4
953,522 - -0.7
953,522 - -0.8
953,527 + +0.0
953,527 + -0.8
953,528 - +0.4
953,528 - +0.2
953,528 - +0.1
953,720 - PfGW456L13_847 0.33 -0.7
953,720 - PfGW456L13_847 0.33 -0.4
953,720 - PfGW456L13_847 0.33 +2.0
953,734 - PfGW456L13_847 0.38 +0.4
953,735 + PfGW456L13_847 0.38 -0.1
953,759 - PfGW456L13_847 0.47 -0.0
953,830 - PfGW456L13_847 0.72 +0.6
953,858 + PfGW456L13_847 0.82 -2.1
953,859 - PfGW456L13_847 0.83 +1.4
954,122 + PfGW456L13_848 0.65 -0.9
954,190 + PfGW456L13_848 0.85 -0.6
954,190 + PfGW456L13_848 0.85 -2.3
954,191 - PfGW456L13_848 0.86 +1.0
954,191 - PfGW456L13_848 0.86 -1.3
954,283 - +0.2
954,283 - -0.6
954,380 + +0.5
954,380 + +0.0
954,381 - -0.8
954,381 - +0.0
954,381 - -0.9
954,413 + +0.0
954,413 + -0.1
954,414 - -0.4
954,460 - -0.1
954,460 - -0.8
954,573 + +0.0
954,573 + -0.3
954,573 + -0.5
954,573 + -0.3
954,574 - -0.1
954,574 - -1.9
954,608 - -1.1
954,608 - +0.9
954,610 - -1.5
954,627 - -0.5
954,939 + PfGW456L13_849 0.51 -0.3
954,940 - PfGW456L13_849 0.51 -0.0
954,940 - PfGW456L13_849 0.51 -0.2
954,940 - PfGW456L13_849 0.51 -0.3
955,205 + -0.4
955,205 + +0.1
955,206 - -1.0
955,206 - -0.5
955,206 - +0.2
955,206 - -0.3

Or see this region's nucleotide sequence