Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4660

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4659 and PfGW456L13_4660 are separated by 204 nucleotidesPfGW456L13_4660 and PfGW456L13_4661 overlap by 4 nucleotidesPfGW456L13_4661 and PfGW456L13_4662 are separated by 75 nucleotides PfGW456L13_4659 - Ferredoxin--NADP(+) reductase (EC 1.18.1.2), at 5,199,834 to 5,200,613 _4659 PfGW456L13_4660 - LysR family transcriptional regulator PA3398, at 5,200,818 to 5,201,687 _4660 PfGW456L13_4661 - Diacylglycerol kinase (EC 2.7.1.107), at 5,201,684 to 5,202,046 _4661 PfGW456L13_4662 - Transcriptional regulator, LuxR family, at 5,202,122 to 5,202,772 _4662 Position (kb) 5200 5201 5202Strain fitness (log2 ratio) -3 -2 -1 0 1at 5199.819 kb on - strandat 5199.819 kb on - strandat 5199.819 kb on - strandat 5200.700 kb on - strandat 5200.700 kb on - strandat 5200.700 kb on - strandat 5200.700 kb on - strandat 5200.700 kb on - strandat 5200.715 kb on - strandat 5200.715 kb on - strandat 5200.715 kb on - strandat 5200.770 kb on - strandat 5200.770 kb on - strandat 5200.790 kb on - strandat 5200.790 kb on - strandat 5201.070 kb on + strand, within PfGW456L13_4660at 5201.070 kb on + strandat 5201.070 kb on + strand, within PfGW456L13_4660at 5201.071 kb on - strand, within PfGW456L13_4660at 5201.137 kb on + strand, within PfGW456L13_4660at 5201.137 kb on + strand, within PfGW456L13_4660at 5201.137 kb on + strand, within PfGW456L13_4660at 5201.137 kb on + strand, within PfGW456L13_4660at 5201.137 kb on + strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.138 kb on - strand, within PfGW456L13_4660at 5201.154 kb on - strand, within PfGW456L13_4660at 5201.175 kb on + strand, within PfGW456L13_4660at 5201.565 kb on + strand, within PfGW456L13_4660at 5201.565 kb on + strand, within PfGW456L13_4660at 5201.566 kb on - strand, within PfGW456L13_4660at 5201.579 kb on + strand, within PfGW456L13_4660at 5201.590 kb on - strand, within PfGW456L13_4660at 5201.590 kb on - strand, within PfGW456L13_4660at 5201.685 kb on + strandat 5201.855 kb on + strand, within PfGW456L13_4661at 5201.855 kb on + strand, within PfGW456L13_4661at 5201.855 kb on + strand, within PfGW456L13_4661at 5201.856 kb on - strand, within PfGW456L13_4661at 5201.933 kb on + strand, within PfGW456L13_4661at 5201.933 kb on + strand, within PfGW456L13_4661at 5201.933 kb on + strand, within PfGW456L13_4661at 5201.933 kb on + strand, within PfGW456L13_4661at 5201.933 kb on + strand, within PfGW456L13_4661at 5201.934 kb on - strand, within PfGW456L13_4661at 5201.934 kb on - strand, within PfGW456L13_4661at 5202.010 kb on + strandat 5202.011 kb on - strandat 5202.011 kb on - strandat 5202.011 kb on - strandat 5202.011 kb on - strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.046 kb on + strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.047 kb on - strandat 5202.082 kb on + strandat 5202.082 kb on + strandat 5202.082 kb on + strandat 5202.082 kb on + strandat 5202.083 kb on - strandat 5202.083 kb on - strandat 5202.083 kb on - strandat 5202.223 kb on + strand, within PfGW456L13_4662at 5202.223 kb on + strand, within PfGW456L13_4662at 5202.249 kb on + strand, within PfGW456L13_4662

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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5,199,819 - +0.1
5,199,819 - +0.4
5,199,819 - +0.2
5,200,700 - +0.4
5,200,700 - -0.6
5,200,700 - -0.4
5,200,700 - -1.2
5,200,700 - -1.6
5,200,715 - -0.6
5,200,715 - -3.3
5,200,715 - -2.2
5,200,770 - +0.8
5,200,770 - -0.2
5,200,790 - +0.5
5,200,790 - +0.0
5,201,070 + PfGW456L13_4660 0.29 -0.6
5,201,070 + +1.7
5,201,070 + PfGW456L13_4660 0.29 +0.7
5,201,071 - PfGW456L13_4660 0.29 -0.6
5,201,137 + PfGW456L13_4660 0.37 -1.5
5,201,137 + PfGW456L13_4660 0.37 -1.5
5,201,137 + PfGW456L13_4660 0.37 -0.6
5,201,137 + PfGW456L13_4660 0.37 -0.9
5,201,137 + PfGW456L13_4660 0.37 -1.1
5,201,138 - PfGW456L13_4660 0.37 -1.3
5,201,138 - PfGW456L13_4660 0.37 -0.7
5,201,138 - PfGW456L13_4660 0.37 +1.0
5,201,138 - PfGW456L13_4660 0.37 -0.2
5,201,138 - PfGW456L13_4660 0.37 -0.1
5,201,138 - PfGW456L13_4660 0.37 +0.3
5,201,138 - PfGW456L13_4660 0.37 +0.5
5,201,154 - PfGW456L13_4660 0.39 -2.2
5,201,175 + PfGW456L13_4660 0.41 -1.1
5,201,565 + PfGW456L13_4660 0.86 -3.0
5,201,565 + PfGW456L13_4660 0.86 -2.5
5,201,566 - PfGW456L13_4660 0.86 -0.6
5,201,579 + PfGW456L13_4660 0.87 -2.5
5,201,590 - PfGW456L13_4660 0.89 +0.7
5,201,590 - PfGW456L13_4660 0.89 -1.9
5,201,685 + +1.4
5,201,855 + PfGW456L13_4661 0.47 +0.4
5,201,855 + PfGW456L13_4661 0.47 +0.1
5,201,855 + PfGW456L13_4661 0.47 -1.7
5,201,856 - PfGW456L13_4661 0.47 +1.3
5,201,933 + PfGW456L13_4661 0.69 -0.2
5,201,933 + PfGW456L13_4661 0.69 -0.4
5,201,933 + PfGW456L13_4661 0.69 +0.4
5,201,933 + PfGW456L13_4661 0.69 +0.7
5,201,933 + PfGW456L13_4661 0.69 -1.1
5,201,934 - PfGW456L13_4661 0.69 +0.5
5,201,934 - PfGW456L13_4661 0.69 -0.6
5,202,010 + +0.6
5,202,011 - +0.3
5,202,011 - +0.4
5,202,011 - +0.5
5,202,011 - +0.2
5,202,046 + -0.1
5,202,046 + -1.6
5,202,046 + +0.2
5,202,046 + +0.2
5,202,046 + +0.7
5,202,046 + -1.6
5,202,046 + -0.6
5,202,046 + +1.1
5,202,046 + +1.2
5,202,046 + +0.1
5,202,046 + -0.6
5,202,046 + +0.6
5,202,046 + +0.2
5,202,047 - -0.1
5,202,047 - -1.2
5,202,047 - +0.3
5,202,047 - -0.5
5,202,047 - +1.3
5,202,047 - +1.1
5,202,047 - +0.7
5,202,047 - +0.0
5,202,047 - -0.0
5,202,047 - -0.9
5,202,047 - +0.8
5,202,047 - -0.1
5,202,047 - +0.1
5,202,047 - +0.4
5,202,047 - +0.3
5,202,082 + -0.4
5,202,082 + -0.8
5,202,082 + +0.1
5,202,082 + -1.8
5,202,083 - -0.2
5,202,083 - +0.0
5,202,083 - -0.1
5,202,223 + PfGW456L13_4662 0.16 +0.2
5,202,223 + PfGW456L13_4662 0.16 +0.8
5,202,249 + PfGW456L13_4662 0.20 +1.5

Or see this region's nucleotide sequence