Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4659 and PfGW456L13_4660 are separated by 204 nucleotides PfGW456L13_4660 and PfGW456L13_4661 overlap by 4 nucleotides PfGW456L13_4661 and PfGW456L13_4662 are separated by 75 nucleotides
PfGW456L13_4659 - Ferredoxin--NADP(+) reductase (EC 1.18.1.2), at 5,199,834 to 5,200,613
_4659
PfGW456L13_4660 - LysR family transcriptional regulator PA3398, at 5,200,818 to 5,201,687
_4660
PfGW456L13_4661 - Diacylglycerol kinase (EC 2.7.1.107), at 5,201,684 to 5,202,046
_4661
PfGW456L13_4662 - Transcriptional regulator, LuxR family, at 5,202,122 to 5,202,772
_4662
Position (kb)
5200
5201
5202 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5199.819 kb on - strand at 5199.819 kb on - strand at 5199.819 kb on - strand at 5200.700 kb on - strand at 5200.700 kb on - strand at 5200.700 kb on - strand at 5200.700 kb on - strand at 5200.700 kb on - strand at 5200.715 kb on - strand at 5200.715 kb on - strand at 5200.715 kb on - strand at 5200.770 kb on - strand at 5200.770 kb on - strand at 5200.790 kb on - strand at 5200.790 kb on - strand at 5201.070 kb on + strand, within PfGW456L13_4660 at 5201.070 kb on + strand at 5201.070 kb on + strand, within PfGW456L13_4660 at 5201.071 kb on - strand, within PfGW456L13_4660 at 5201.137 kb on + strand, within PfGW456L13_4660 at 5201.137 kb on + strand, within PfGW456L13_4660 at 5201.137 kb on + strand, within PfGW456L13_4660 at 5201.137 kb on + strand, within PfGW456L13_4660 at 5201.137 kb on + strand, within PfGW456L13_4660 at 5201.138 kb on - strand, within PfGW456L13_4660 at 5201.138 kb on - strand, within PfGW456L13_4660 at 5201.138 kb on - strand, within PfGW456L13_4660 at 5201.138 kb on - strand, within PfGW456L13_4660 at 5201.138 kb on - strand, within PfGW456L13_4660 at 5201.138 kb on - strand, within PfGW456L13_4660 at 5201.138 kb on - strand, within PfGW456L13_4660 at 5201.154 kb on - strand, within PfGW456L13_4660 at 5201.175 kb on + strand, within PfGW456L13_4660 at 5201.565 kb on + strand, within PfGW456L13_4660 at 5201.565 kb on + strand, within PfGW456L13_4660 at 5201.566 kb on - strand, within PfGW456L13_4660 at 5201.579 kb on + strand, within PfGW456L13_4660 at 5201.590 kb on - strand, within PfGW456L13_4660 at 5201.590 kb on - strand, within PfGW456L13_4660 at 5201.685 kb on + strand at 5201.855 kb on + strand, within PfGW456L13_4661 at 5201.855 kb on + strand, within PfGW456L13_4661 at 5201.855 kb on + strand, within PfGW456L13_4661 at 5201.856 kb on - strand, within PfGW456L13_4661 at 5201.933 kb on + strand, within PfGW456L13_4661 at 5201.933 kb on + strand, within PfGW456L13_4661 at 5201.933 kb on + strand, within PfGW456L13_4661 at 5201.933 kb on + strand, within PfGW456L13_4661 at 5201.933 kb on + strand, within PfGW456L13_4661 at 5201.934 kb on - strand, within PfGW456L13_4661 at 5201.934 kb on - strand, within PfGW456L13_4661 at 5202.010 kb on + strand at 5202.011 kb on - strand at 5202.011 kb on - strand at 5202.011 kb on - strand at 5202.011 kb on - strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.046 kb on + strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.047 kb on - strand at 5202.082 kb on + strand at 5202.082 kb on + strand at 5202.082 kb on + strand at 5202.082 kb on + strand at 5202.083 kb on - strand at 5202.083 kb on - strand at 5202.083 kb on - strand at 5202.223 kb on + strand, within PfGW456L13_4662 at 5202.223 kb on + strand, within PfGW456L13_4662 at 5202.249 kb on + strand, within PfGW456L13_4662
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 5,199,819 - +0.1 5,199,819 - +0.4 5,199,819 - +0.2 5,200,700 - +0.4 5,200,700 - -0.6 5,200,700 - -0.4 5,200,700 - -1.2 5,200,700 - -1.6 5,200,715 - -0.6 5,200,715 - -3.3 5,200,715 - -2.2 5,200,770 - +0.8 5,200,770 - -0.2 5,200,790 - +0.5 5,200,790 - +0.0 5,201,070 + PfGW456L13_4660 0.29 -0.6 5,201,070 + +1.7 5,201,070 + PfGW456L13_4660 0.29 +0.7 5,201,071 - PfGW456L13_4660 0.29 -0.6 5,201,137 + PfGW456L13_4660 0.37 -1.5 5,201,137 + PfGW456L13_4660 0.37 -1.5 5,201,137 + PfGW456L13_4660 0.37 -0.6 5,201,137 + PfGW456L13_4660 0.37 -0.9 5,201,137 + PfGW456L13_4660 0.37 -1.1 5,201,138 - PfGW456L13_4660 0.37 -1.3 5,201,138 - PfGW456L13_4660 0.37 -0.7 5,201,138 - PfGW456L13_4660 0.37 +1.0 5,201,138 - PfGW456L13_4660 0.37 -0.2 5,201,138 - PfGW456L13_4660 0.37 -0.1 5,201,138 - PfGW456L13_4660 0.37 +0.3 5,201,138 - PfGW456L13_4660 0.37 +0.5 5,201,154 - PfGW456L13_4660 0.39 -2.2 5,201,175 + PfGW456L13_4660 0.41 -1.1 5,201,565 + PfGW456L13_4660 0.86 -3.0 5,201,565 + PfGW456L13_4660 0.86 -2.5 5,201,566 - PfGW456L13_4660 0.86 -0.6 5,201,579 + PfGW456L13_4660 0.87 -2.5 5,201,590 - PfGW456L13_4660 0.89 +0.7 5,201,590 - PfGW456L13_4660 0.89 -1.9 5,201,685 + +1.4 5,201,855 + PfGW456L13_4661 0.47 +0.4 5,201,855 + PfGW456L13_4661 0.47 +0.1 5,201,855 + PfGW456L13_4661 0.47 -1.7 5,201,856 - PfGW456L13_4661 0.47 +1.3 5,201,933 + PfGW456L13_4661 0.69 -0.2 5,201,933 + PfGW456L13_4661 0.69 -0.4 5,201,933 + PfGW456L13_4661 0.69 +0.4 5,201,933 + PfGW456L13_4661 0.69 +0.7 5,201,933 + PfGW456L13_4661 0.69 -1.1 5,201,934 - PfGW456L13_4661 0.69 +0.5 5,201,934 - PfGW456L13_4661 0.69 -0.6 5,202,010 + +0.6 5,202,011 - +0.3 5,202,011 - +0.4 5,202,011 - +0.5 5,202,011 - +0.2 5,202,046 + -0.1 5,202,046 + -1.6 5,202,046 + +0.2 5,202,046 + +0.2 5,202,046 + +0.7 5,202,046 + -1.6 5,202,046 + -0.6 5,202,046 + +1.1 5,202,046 + +1.2 5,202,046 + +0.1 5,202,046 + -0.6 5,202,046 + +0.6 5,202,046 + +0.2 5,202,047 - -0.1 5,202,047 - -1.2 5,202,047 - +0.3 5,202,047 - -0.5 5,202,047 - +1.3 5,202,047 - +1.1 5,202,047 - +0.7 5,202,047 - +0.0 5,202,047 - -0.0 5,202,047 - -0.9 5,202,047 - +0.8 5,202,047 - -0.1 5,202,047 - +0.1 5,202,047 - +0.4 5,202,047 - +0.3 5,202,082 + -0.4 5,202,082 + -0.8 5,202,082 + +0.1 5,202,082 + -1.8 5,202,083 - -0.2 5,202,083 - +0.0 5,202,083 - -0.1 5,202,223 + PfGW456L13_4662 0.16 +0.2 5,202,223 + PfGW456L13_4662 0.16 +0.8 5,202,249 + PfGW456L13_4662 0.20 +1.5
Or see this region's nucleotide sequence