Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4299

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4298 and PfGW456L13_4299 overlap by 11 nucleotidesPfGW456L13_4299 and PfGW456L13_4300 are separated by 88 nucleotides PfGW456L13_4298 - D-glycerate 2-kinase (EC 2.7.1.-), at 4,814,913 to 4,816,193 _4298 PfGW456L13_4299 - Pyruvate kinase (EC 2.7.1.40), at 4,816,183 to 4,817,598 _4299 PfGW456L13_4300 - Eukaryotic-type low-affinity urea transporter, at 4,817,687 to 4,818,658 _4300 Position (kb) 4816 4817 4818Strain fitness (log2 ratio) -2 -1 0 1 2at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.453 kb on + strand, within PfGW456L13_4298at 4815.453 kb on + strand, within PfGW456L13_4298at 4815.453 kb on + strand, within PfGW456L13_4298at 4815.453 kb on + strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.507 kb on - strand, within PfGW456L13_4298at 4815.551 kb on - strand, within PfGW456L13_4298at 4815.948 kb on + strand, within PfGW456L13_4298at 4815.949 kb on - strand, within PfGW456L13_4298at 4815.949 kb on - strand, within PfGW456L13_4298at 4816.023 kb on + strand, within PfGW456L13_4298at 4816.024 kb on - strand, within PfGW456L13_4298at 4816.114 kb on + strandat 4816.115 kb on - strandat 4816.178 kb on + strandat 4816.179 kb on - strandat 4816.194 kb on + strandat 4816.598 kb on - strand, within PfGW456L13_4299at 4816.598 kb on - strand, within PfGW456L13_4299at 4816.664 kb on + strand, within PfGW456L13_4299at 4816.664 kb on + strand, within PfGW456L13_4299at 4817.132 kb on - strand, within PfGW456L13_4299at 4817.194 kb on + strand, within PfGW456L13_4299at 4817.271 kb on + strand, within PfGW456L13_4299at 4817.308 kb on + strand, within PfGW456L13_4299at 4817.308 kb on + strand, within PfGW456L13_4299at 4817.308 kb on + strand, within PfGW456L13_4299at 4817.309 kb on - strand, within PfGW456L13_4299at 4817.309 kb on - strand, within PfGW456L13_4299at 4817.309 kb on - strand, within PfGW456L13_4299at 4817.309 kb on - strand, within PfGW456L13_4299at 4817.568 kb on + strandat 4817.568 kb on + strandat 4817.569 kb on - strandat 4817.569 kb on - strandat 4817.569 kb on - strandat 4817.596 kb on + strandat 4817.597 kb on - strandat 4817.942 kb on + strand, within PfGW456L13_4300at 4817.942 kb on + strand, within PfGW456L13_4300at 4817.942 kb on + strand, within PfGW456L13_4300at 4817.943 kb on - strand, within PfGW456L13_4300at 4817.943 kb on - strand, within PfGW456L13_4300at 4817.978 kb on + strand, within PfGW456L13_4300at 4817.979 kb on - strand, within PfGW456L13_4300at 4818.003 kb on + strand, within PfGW456L13_4300at 4818.004 kb on - strand, within PfGW456L13_4300at 4818.116 kb on + strand, within PfGW456L13_4300at 4818.116 kb on + strand, within PfGW456L13_4300at 4818.129 kb on - strand, within PfGW456L13_4300at 4818.129 kb on - strand, within PfGW456L13_4300at 4818.129 kb on - strand, within PfGW456L13_4300at 4818.390 kb on - strand, within PfGW456L13_4300at 4818.416 kb on + strand, within PfGW456L13_4300at 4818.416 kb on + strand, within PfGW456L13_4300at 4818.416 kb on + strand, within PfGW456L13_4300at 4818.416 kb on + strand, within PfGW456L13_4300at 4818.416 kb on + strand, within PfGW456L13_4300at 4818.416 kb on + strand, within PfGW456L13_4300at 4818.417 kb on - strand, within PfGW456L13_4300

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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4,815,449 + PfGW456L13_4298 0.42 +0.8
4,815,449 + PfGW456L13_4298 0.42 +1.1
4,815,449 + PfGW456L13_4298 0.42 -0.5
4,815,449 + PfGW456L13_4298 0.42 +0.4
4,815,449 + PfGW456L13_4298 0.42 +0.3
4,815,449 + PfGW456L13_4298 0.42 +0.3
4,815,449 + PfGW456L13_4298 0.42 -0.4
4,815,449 + PfGW456L13_4298 0.42 -0.3
4,815,450 - PfGW456L13_4298 0.42 +2.3
4,815,450 - PfGW456L13_4298 0.42 -0.5
4,815,450 - PfGW456L13_4298 0.42 -0.1
4,815,450 - PfGW456L13_4298 0.42 -1.1
4,815,450 - PfGW456L13_4298 0.42 +0.4
4,815,450 - PfGW456L13_4298 0.42 +0.3
4,815,450 - PfGW456L13_4298 0.42 -0.3
4,815,450 - PfGW456L13_4298 0.42 -0.3
4,815,450 - PfGW456L13_4298 0.42 -0.3
4,815,450 - PfGW456L13_4298 0.42 +0.4
4,815,450 - PfGW456L13_4298 0.42 +0.2
4,815,450 - PfGW456L13_4298 0.42 +2.4
4,815,450 - PfGW456L13_4298 0.42 -0.6
4,815,450 - PfGW456L13_4298 0.42 -0.7
4,815,453 + PfGW456L13_4298 0.42 +0.6
4,815,453 + PfGW456L13_4298 0.42 +0.3
4,815,453 + PfGW456L13_4298 0.42 +0.1
4,815,453 + PfGW456L13_4298 0.42 -0.7
4,815,454 - PfGW456L13_4298 0.42 -0.8
4,815,454 - PfGW456L13_4298 0.42 +0.0
4,815,454 - PfGW456L13_4298 0.42 +0.5
4,815,454 - PfGW456L13_4298 0.42 -0.1
4,815,454 - PfGW456L13_4298 0.42 -1.6
4,815,454 - PfGW456L13_4298 0.42 -0.7
4,815,507 - PfGW456L13_4298 0.46 -0.1
4,815,551 - PfGW456L13_4298 0.50 +0.5
4,815,948 + PfGW456L13_4298 0.81 +0.3
4,815,949 - PfGW456L13_4298 0.81 +0.0
4,815,949 - PfGW456L13_4298 0.81 -0.2
4,816,023 + PfGW456L13_4298 0.87 -0.3
4,816,024 - PfGW456L13_4298 0.87 +0.0
4,816,114 + +0.6
4,816,115 - -0.0
4,816,178 + -0.7
4,816,179 - +0.4
4,816,194 + +1.0
4,816,598 - PfGW456L13_4299 0.29 +0.2
4,816,598 - PfGW456L13_4299 0.29 -0.1
4,816,664 + PfGW456L13_4299 0.34 +1.1
4,816,664 + PfGW456L13_4299 0.34 -0.6
4,817,132 - PfGW456L13_4299 0.67 -0.1
4,817,194 + PfGW456L13_4299 0.71 -0.3
4,817,271 + PfGW456L13_4299 0.77 -0.9
4,817,308 + PfGW456L13_4299 0.79 -0.3
4,817,308 + PfGW456L13_4299 0.79 +0.8
4,817,308 + PfGW456L13_4299 0.79 -0.8
4,817,309 - PfGW456L13_4299 0.80 -0.3
4,817,309 - PfGW456L13_4299 0.80 +0.4
4,817,309 - PfGW456L13_4299 0.80 -0.4
4,817,309 - PfGW456L13_4299 0.80 -1.1
4,817,568 + -0.4
4,817,568 + -1.5
4,817,569 - -0.5
4,817,569 - +0.3
4,817,569 - +0.5
4,817,596 + -0.1
4,817,597 - +0.6
4,817,942 + PfGW456L13_4300 0.26 -0.2
4,817,942 + PfGW456L13_4300 0.26 +0.2
4,817,942 + PfGW456L13_4300 0.26 -0.2
4,817,943 - PfGW456L13_4300 0.26 -2.0
4,817,943 - PfGW456L13_4300 0.26 -0.1
4,817,978 + PfGW456L13_4300 0.30 +0.8
4,817,979 - PfGW456L13_4300 0.30 -0.1
4,818,003 + PfGW456L13_4300 0.33 +0.6
4,818,004 - PfGW456L13_4300 0.33 -0.7
4,818,116 + PfGW456L13_4300 0.44 +0.4
4,818,116 + PfGW456L13_4300 0.44 -0.4
4,818,129 - PfGW456L13_4300 0.45 +0.1
4,818,129 - PfGW456L13_4300 0.45 +0.6
4,818,129 - PfGW456L13_4300 0.45 +0.8
4,818,390 - PfGW456L13_4300 0.72 +0.5
4,818,416 + PfGW456L13_4300 0.75 +0.5
4,818,416 + PfGW456L13_4300 0.75 -0.1
4,818,416 + PfGW456L13_4300 0.75 +2.0
4,818,416 + PfGW456L13_4300 0.75 -0.2
4,818,416 + PfGW456L13_4300 0.75 -1.0
4,818,416 + PfGW456L13_4300 0.75 -1.3
4,818,417 - PfGW456L13_4300 0.75 -0.3

Or see this region's nucleotide sequence