Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2258

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2257 and PfGW456L13_2258 overlap by 4 nucleotidesPfGW456L13_2258 and PfGW456L13_2259 are separated by 0 nucleotides PfGW456L13_2257 - putative ATP/GTP-binding protein, at 2,470,663 to 2,471,553 _2257 PfGW456L13_2258 - Free methionine-(R)-sulfoxide reductase, contains GAF domain, at 2,471,550 to 2,472,032 _2258 PfGW456L13_2259 - Adenylate cyclase (EC 4.6.1.1), at 2,472,033 to 2,474,978 _2259 Position (kb) 2471 2472 2473Strain fitness (log2 ratio) -2 -1 0 1at 2470.581 kb on - strandat 2470.624 kb on + strandat 2470.625 kb on - strandat 2470.625 kb on - strandat 2470.625 kb on - strandat 2470.636 kb on + strandat 2470.636 kb on + strandat 2470.637 kb on - strandat 2470.637 kb on - strandat 2471.197 kb on + strand, within PfGW456L13_2257at 2471.197 kb on + strand, within PfGW456L13_2257at 2471.197 kb on + strand, within PfGW456L13_2257at 2471.197 kb on + strand, within PfGW456L13_2257at 2471.197 kb on + strand, within PfGW456L13_2257at 2471.198 kb on - strand, within PfGW456L13_2257at 2471.515 kb on + strandat 2471.560 kb on + strandat 2471.561 kb on - strandat 2471.599 kb on + strand, within PfGW456L13_2258at 2471.599 kb on + strand, within PfGW456L13_2258at 2471.599 kb on + strand, within PfGW456L13_2258at 2471.599 kb on + strand, within PfGW456L13_2258at 2471.600 kb on - strand, within PfGW456L13_2258at 2471.600 kb on - strand, within PfGW456L13_2258at 2471.600 kb on - strand, within PfGW456L13_2258at 2471.600 kb on - strand, within PfGW456L13_2258at 2471.600 kb on - strand, within PfGW456L13_2258at 2471.600 kb on - strand, within PfGW456L13_2258at 2471.713 kb on - strand, within PfGW456L13_2258at 2472.115 kb on + strandat 2472.124 kb on + strandat 2472.124 kb on + strandat 2472.124 kb on + strandat 2472.124 kb on + strandat 2472.125 kb on - strandat 2472.125 kb on - strandat 2472.125 kb on - strandat 2472.125 kb on - strandat 2472.266 kb on + strandat 2472.367 kb on - strand, within PfGW456L13_2259at 2472.451 kb on + strand, within PfGW456L13_2259at 2472.451 kb on + strand, within PfGW456L13_2259at 2472.451 kb on + strand, within PfGW456L13_2259at 2472.451 kb on + strand, within PfGW456L13_2259at 2472.451 kb on + strand, within PfGW456L13_2259at 2472.451 kb on + strand, within PfGW456L13_2259at 2472.451 kb on + strand, within PfGW456L13_2259at 2472.452 kb on - strand, within PfGW456L13_2259at 2472.452 kb on - strand, within PfGW456L13_2259at 2472.452 kb on - strand, within PfGW456L13_2259at 2472.452 kb on - strand, within PfGW456L13_2259at 2472.496 kb on + strand, within PfGW456L13_2259at 2472.496 kb on + strand, within PfGW456L13_2259at 2472.496 kb on + strand, within PfGW456L13_2259at 2472.496 kb on + strand, within PfGW456L13_2259at 2472.496 kb on + strand, within PfGW456L13_2259at 2472.496 kb on + strand, within PfGW456L13_2259at 2472.496 kb on + strand, within PfGW456L13_2259at 2472.496 kb on + strand, within PfGW456L13_2259at 2472.497 kb on - strand, within PfGW456L13_2259at 2472.497 kb on - strand, within PfGW456L13_2259at 2472.497 kb on - strand, within PfGW456L13_2259at 2472.497 kb on - strand, within PfGW456L13_2259at 2472.497 kb on - strand, within PfGW456L13_2259at 2472.497 kb on - strand, within PfGW456L13_2259at 2472.497 kb on - strand, within PfGW456L13_2259at 2472.514 kb on + strand, within PfGW456L13_2259at 2472.514 kb on + strand, within PfGW456L13_2259at 2472.514 kb on + strand, within PfGW456L13_2259at 2472.514 kb on + strand, within PfGW456L13_2259at 2472.515 kb on - strand, within PfGW456L13_2259at 2472.515 kb on - strand, within PfGW456L13_2259at 2472.515 kb on - strand, within PfGW456L13_2259at 2472.515 kb on - strand, within PfGW456L13_2259at 2472.883 kb on + strand, within PfGW456L13_2259at 2472.883 kb on + strand, within PfGW456L13_2259at 2472.909 kb on + strand, within PfGW456L13_2259at 2472.909 kb on + strand, within PfGW456L13_2259at 2472.909 kb on + strand, within PfGW456L13_2259at 2472.909 kb on + strand, within PfGW456L13_2259at 2472.982 kb on + strand, within PfGW456L13_2259at 2472.982 kb on + strand, within PfGW456L13_2259at 2472.982 kb on + strand, within PfGW456L13_2259at 2472.982 kb on + strand, within PfGW456L13_2259at 2472.983 kb on - strand, within PfGW456L13_2259at 2472.983 kb on - strand, within PfGW456L13_2259at 2472.983 kb on - strand, within PfGW456L13_2259at 2472.983 kb on - strand, within PfGW456L13_2259at 2472.983 kb on - strand, within PfGW456L13_2259at 2472.983 kb on - strand, within PfGW456L13_2259

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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2,470,581 - +0.3
2,470,624 + -0.8
2,470,625 - -0.9
2,470,625 - +0.0
2,470,625 - -1.4
2,470,636 + +0.5
2,470,636 + -0.4
2,470,637 - -1.8
2,470,637 - -1.2
2,471,197 + PfGW456L13_2257 0.60 +0.1
2,471,197 + PfGW456L13_2257 0.60 -2.0
2,471,197 + PfGW456L13_2257 0.60 +0.3
2,471,197 + PfGW456L13_2257 0.60 +0.0
2,471,197 + PfGW456L13_2257 0.60 -0.6
2,471,198 - PfGW456L13_2257 0.60 -0.7
2,471,515 + +0.6
2,471,560 + +0.5
2,471,561 - +0.6
2,471,599 + PfGW456L13_2258 0.10 -1.1
2,471,599 + PfGW456L13_2258 0.10 +1.0
2,471,599 + PfGW456L13_2258 0.10 -0.6
2,471,599 + PfGW456L13_2258 0.10 -0.4
2,471,600 - PfGW456L13_2258 0.10 -1.4
2,471,600 - PfGW456L13_2258 0.10 -1.0
2,471,600 - PfGW456L13_2258 0.10 -0.5
2,471,600 - PfGW456L13_2258 0.10 -0.7
2,471,600 - PfGW456L13_2258 0.10 -1.0
2,471,600 - PfGW456L13_2258 0.10 -1.3
2,471,713 - PfGW456L13_2258 0.34 -1.0
2,472,115 + -0.9
2,472,124 + -0.0
2,472,124 + +0.3
2,472,124 + -0.2
2,472,124 + +0.4
2,472,125 - -1.3
2,472,125 - +0.1
2,472,125 - +1.2
2,472,125 - -1.0
2,472,266 + +0.3
2,472,367 - PfGW456L13_2259 0.11 -0.9
2,472,451 + PfGW456L13_2259 0.14 -0.1
2,472,451 + PfGW456L13_2259 0.14 -1.2
2,472,451 + PfGW456L13_2259 0.14 -0.4
2,472,451 + PfGW456L13_2259 0.14 +0.0
2,472,451 + PfGW456L13_2259 0.14 -0.5
2,472,451 + PfGW456L13_2259 0.14 -0.0
2,472,451 + PfGW456L13_2259 0.14 +0.8
2,472,452 - PfGW456L13_2259 0.14 +1.1
2,472,452 - PfGW456L13_2259 0.14 +1.3
2,472,452 - PfGW456L13_2259 0.14 +0.3
2,472,452 - PfGW456L13_2259 0.14 -1.0
2,472,496 + PfGW456L13_2259 0.16 -0.0
2,472,496 + PfGW456L13_2259 0.16 -0.1
2,472,496 + PfGW456L13_2259 0.16 -1.1
2,472,496 + PfGW456L13_2259 0.16 +0.5
2,472,496 + PfGW456L13_2259 0.16 -0.2
2,472,496 + PfGW456L13_2259 0.16 -0.4
2,472,496 + PfGW456L13_2259 0.16 -0.5
2,472,496 + PfGW456L13_2259 0.16 -1.1
2,472,497 - PfGW456L13_2259 0.16 +1.6
2,472,497 - PfGW456L13_2259 0.16 -1.3
2,472,497 - PfGW456L13_2259 0.16 +0.9
2,472,497 - PfGW456L13_2259 0.16 -0.3
2,472,497 - PfGW456L13_2259 0.16 -0.8
2,472,497 - PfGW456L13_2259 0.16 -0.9
2,472,497 - PfGW456L13_2259 0.16 -1.6
2,472,514 + PfGW456L13_2259 0.16 -0.2
2,472,514 + PfGW456L13_2259 0.16 +1.3
2,472,514 + PfGW456L13_2259 0.16 +0.9
2,472,514 + PfGW456L13_2259 0.16 +1.3
2,472,515 - PfGW456L13_2259 0.16 -0.2
2,472,515 - PfGW456L13_2259 0.16 -1.3
2,472,515 - PfGW456L13_2259 0.16 -0.2
2,472,515 - PfGW456L13_2259 0.16 +0.4
2,472,883 + PfGW456L13_2259 0.29 -0.4
2,472,883 + PfGW456L13_2259 0.29 -2.3
2,472,909 + PfGW456L13_2259 0.30 -1.2
2,472,909 + PfGW456L13_2259 0.30 +0.2
2,472,909 + PfGW456L13_2259 0.30 -0.3
2,472,909 + PfGW456L13_2259 0.30 +0.2
2,472,982 + PfGW456L13_2259 0.32 -1.0
2,472,982 + PfGW456L13_2259 0.32 +1.1
2,472,982 + PfGW456L13_2259 0.32 -0.2
2,472,982 + PfGW456L13_2259 0.32 +0.1
2,472,983 - PfGW456L13_2259 0.32 +0.7
2,472,983 - PfGW456L13_2259 0.32 -0.2
2,472,983 - PfGW456L13_2259 0.32 -0.7
2,472,983 - PfGW456L13_2259 0.32 -1.5
2,472,983 - PfGW456L13_2259 0.32 -0.3
2,472,983 - PfGW456L13_2259 0.32 -0.1

Or see this region's nucleotide sequence