Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1902

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1901 and PfGW456L13_1902 overlap by 14 nucleotidesPfGW456L13_1902 and PfGW456L13_1903 are separated by 17 nucleotidesPfGW456L13_1903 and PfGW456L13_1904 are separated by 274 nucleotides PfGW456L13_1901 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 2,095,897 to 2,097,366 _1901 PfGW456L13_1902 - 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type, at 2,097,353 to 2,098,066 _1902 PfGW456L13_1903 - 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14), at 2,098,084 to 2,098,749 _1903 PfGW456L13_1904 - putative dioxygenase, at 2,099,024 to 2,099,749 _1904 Position (kb) 2097 2098 2099Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2096.407 kb on + strand, within PfGW456L13_1901at 2096.422 kb on + strand, within PfGW456L13_1901at 2096.422 kb on + strand, within PfGW456L13_1901at 2096.422 kb on + strand, within PfGW456L13_1901at 2096.422 kb on + strand, within PfGW456L13_1901at 2096.503 kb on + strand, within PfGW456L13_1901at 2096.752 kb on + strand, within PfGW456L13_1901at 2096.890 kb on + strand, within PfGW456L13_1901at 2096.890 kb on + strand, within PfGW456L13_1901at 2096.890 kb on + strand, within PfGW456L13_1901at 2096.962 kb on + strand, within PfGW456L13_1901at 2096.962 kb on + strand, within PfGW456L13_1901at 2096.962 kb on + strand, within PfGW456L13_1901at 2096.962 kb on + strand, within PfGW456L13_1901at 2096.962 kb on + strand, within PfGW456L13_1901at 2097.204 kb on + strand, within PfGW456L13_1901at 2097.352 kb on + strandat 2097.401 kb on + strandat 2097.401 kb on + strandat 2097.401 kb on + strandat 2097.401 kb on + strandat 2097.401 kb on + strandat 2097.401 kb on + strandat 2098.761 kb on + strandat 2098.761 kb on + strandat 2098.761 kb on + strandat 2098.761 kb on + strandat 2098.761 kb on + strandat 2098.762 kb on - strandat 2098.762 kb on - strandat 2098.762 kb on - strandat 2098.762 kb on - strandat 2098.780 kb on + strandat 2098.780 kb on + strandat 2098.781 kb on - strandat 2098.781 kb on - strandat 2098.781 kb on - strandat 2098.886 kb on + strandat 2098.886 kb on + strandat 2098.887 kb on - strandat 2098.887 kb on - strandat 2098.887 kb on - strandat 2098.887 kb on - strandat 2098.887 kb on - strandat 2098.887 kb on - strandat 2098.887 kb on - strandat 2098.887 kb on - strandat 2098.887 kb on - strandat 2098.955 kb on + strandat 2098.955 kb on + strandat 2098.955 kb on + strandat 2098.955 kb on + strandat 2098.956 kb on - strandat 2098.956 kb on - strandat 2098.956 kb on - strandat 2098.956 kb on - strandat 2098.956 kb on - strandat 2098.956 kb on - strandat 2098.956 kb on - strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.959 kb on + strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2098.960 kb on - strandat 2099.007 kb on - strandat 2099.007 kb on - strandat 2099.063 kb on + strandat 2099.063 kb on + strandat 2099.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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2,096,407 + PfGW456L13_1901 0.35 -2.3
2,096,422 + PfGW456L13_1901 0.36 -1.3
2,096,422 + PfGW456L13_1901 0.36 -1.9
2,096,422 + PfGW456L13_1901 0.36 -2.3
2,096,422 + PfGW456L13_1901 0.36 -3.0
2,096,503 + PfGW456L13_1901 0.41 -1.5
2,096,752 + PfGW456L13_1901 0.58 -1.3
2,096,890 + PfGW456L13_1901 0.68 -3.0
2,096,890 + PfGW456L13_1901 0.68 -2.4
2,096,890 + PfGW456L13_1901 0.68 -3.4
2,096,962 + PfGW456L13_1901 0.72 -0.1
2,096,962 + PfGW456L13_1901 0.72 -0.9
2,096,962 + PfGW456L13_1901 0.72 -2.0
2,096,962 + PfGW456L13_1901 0.72 -3.0
2,096,962 + PfGW456L13_1901 0.72 -0.7
2,097,204 + PfGW456L13_1901 0.89 -3.6
2,097,352 + +0.3
2,097,401 + -0.4
2,097,401 + -2.1
2,097,401 + -1.7
2,097,401 + -2.3
2,097,401 + -2.0
2,097,401 + -1.9
2,098,761 + -0.3
2,098,761 + -0.1
2,098,761 + +0.9
2,098,761 + -0.2
2,098,761 + +0.9
2,098,762 - +0.5
2,098,762 - -0.2
2,098,762 - +0.3
2,098,762 - +1.0
2,098,780 + -0.2
2,098,780 + -0.2
2,098,781 - +0.4
2,098,781 - -0.0
2,098,781 - +0.1
2,098,886 + +0.4
2,098,886 + -0.6
2,098,887 - -0.2
2,098,887 - -0.2
2,098,887 - -0.0
2,098,887 - +1.1
2,098,887 - -0.5
2,098,887 - +0.5
2,098,887 - -0.5
2,098,887 - +1.1
2,098,887 - +1.5
2,098,955 + +0.0
2,098,955 + -0.5
2,098,955 + -0.2
2,098,955 + -0.3
2,098,956 - -0.1
2,098,956 - +0.6
2,098,956 - +0.5
2,098,956 - -0.3
2,098,956 - -0.8
2,098,956 - +0.5
2,098,956 - +0.8
2,098,959 + +0.7
2,098,959 + +1.9
2,098,959 + -0.6
2,098,959 + +0.4
2,098,959 + +0.4
2,098,959 + +0.6
2,098,959 + -0.6
2,098,959 + -0.1
2,098,959 + +1.7
2,098,959 + +0.3
2,098,959 + -0.0
2,098,959 + -0.3
2,098,959 + -0.1
2,098,959 + -0.5
2,098,959 + -0.6
2,098,959 + +1.6
2,098,959 + -0.2
2,098,959 + +0.3
2,098,959 + +0.1
2,098,959 + +1.7
2,098,959 + -0.2
2,098,959 + -0.6
2,098,959 + +0.1
2,098,959 + +0.2
2,098,959 + +0.1
2,098,960 - +1.2
2,098,960 - -0.1
2,098,960 - +0.5
2,098,960 - -0.9
2,098,960 - +0.1
2,098,960 - +1.1
2,098,960 - -1.2
2,098,960 - +0.5
2,098,960 - -0.2
2,098,960 - -0.2
2,098,960 - +0.4
2,098,960 - +0.3
2,098,960 - +1.1
2,098,960 - +1.3
2,098,960 - +1.2
2,098,960 - +1.2
2,098,960 - -0.1
2,098,960 - -0.1
2,098,960 - +0.5
2,098,960 - +0.4
2,098,960 - -1.0
2,099,007 - -0.3
2,099,007 - -0.3
2,099,063 + -0.3
2,099,063 + -0.2
2,099,064 - +0.5

Or see this region's nucleotide sequence