Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1507

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1504 and PfGW456L13_1505 are separated by 71 nucleotidesPfGW456L13_1505 and PfGW456L13_1506 are separated by 35 nucleotidesPfGW456L13_1506 and PfGW456L13_1507 overlap by 4 nucleotidesPfGW456L13_1507 and PfGW456L13_1508 are separated by 8 nucleotidesPfGW456L13_1508 and PfGW456L13_1509 are separated by 1 nucleotides PfGW456L13_1504 - Transcriptional regulator, LysR family, at 1,655,147 to 1,656,079 _1504 PfGW456L13_1505 - FIG028593: membrane protein, at 1,656,151 to 1,656,840 _1505 PfGW456L13_1506 - FIG003276: zinc-binding protein, at 1,656,876 to 1,657,076 _1506 PfGW456L13_1507 - Dephospho-CoA kinase (EC 2.7.1.24), at 1,657,073 to 1,657,684 _1507 PfGW456L13_1508 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 1,657,693 to 1,658,565 _1508 PfGW456L13_1509 - Type IV fimbrial assembly protein PilC, at 1,658,567 to 1,659,784 _1509 Position (kb) 1657 1658Strain fitness (log2 ratio) -2 -1 0 1 2at 1656.106 kb on + strandat 1656.106 kb on + strandat 1656.106 kb on + strandat 1656.107 kb on - strandat 1656.107 kb on - strandat 1656.107 kb on - strandat 1656.147 kb on - strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.206 kb on - strandat 1656.206 kb on - strandat 1656.206 kb on - strandat 1656.206 kb on - strandat 1656.352 kb on + strand, within PfGW456L13_1505at 1656.353 kb on - strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.570 kb on + strand, within PfGW456L13_1505at 1656.570 kb on + strand, within PfGW456L13_1505at 1656.571 kb on - strand, within PfGW456L13_1505at 1656.571 kb on - strand, within PfGW456L13_1505at 1656.571 kb on - strand, within PfGW456L13_1505at 1656.641 kb on + strand, within PfGW456L13_1505at 1656.641 kb on + strand, within PfGW456L13_1505at 1656.671 kb on - strand, within PfGW456L13_1505at 1656.694 kb on + strand, within PfGW456L13_1505at 1656.695 kb on - strand, within PfGW456L13_1505at 1656.695 kb on - strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.799 kb on + strandat 1656.799 kb on + strandat 1656.799 kb on + strandat 1657.691 kb on - strandat 1657.719 kb on - strandat 1657.719 kb on - strandat 1657.730 kb on - strandat 1657.730 kb on - strandat 1657.775 kb on + strandat 1657.775 kb on + strandat 1657.776 kb on - strandat 1657.997 kb on + strand, within PfGW456L13_1508at 1658.092 kb on + strand, within PfGW456L13_1508at 1658.092 kb on + strand, within PfGW456L13_1508at 1658.093 kb on - strand, within PfGW456L13_1508at 1658.093 kb on - strand, within PfGW456L13_1508at 1658.093 kb on - strand, within PfGW456L13_1508at 1658.104 kb on + strand, within PfGW456L13_1508at 1658.104 kb on + strandat 1658.104 kb on + strand, within PfGW456L13_1508at 1658.104 kb on + strand, within PfGW456L13_1508at 1658.105 kb on - strand, within PfGW456L13_1508at 1658.297 kb on + strand, within PfGW456L13_1508at 1658.297 kb on + strand, within PfGW456L13_1508at 1658.297 kb on + strand, within PfGW456L13_1508at 1658.297 kb on + strand, within PfGW456L13_1508at 1658.297 kb on + strand, within PfGW456L13_1508at 1658.297 kb on + strand, within PfGW456L13_1508at 1658.297 kb on + strand, within PfGW456L13_1508at 1658.297 kb on + strand, within PfGW456L13_1508at 1658.297 kb on + strand, within PfGW456L13_1508at 1658.297 kb on + strand, within PfGW456L13_1508at 1658.297 kb on + strand, within PfGW456L13_1508at 1658.298 kb on - strand, within PfGW456L13_1508at 1658.298 kb on - strand, within PfGW456L13_1508at 1658.298 kb on - strand, within PfGW456L13_1508at 1658.298 kb on - strand, within PfGW456L13_1508at 1658.298 kb on - strand, within PfGW456L13_1508at 1658.298 kb on - strand, within PfGW456L13_1508at 1658.298 kb on - strand, within PfGW456L13_1508at 1658.298 kb on - strand, within PfGW456L13_1508at 1658.298 kb on - strand, within PfGW456L13_1508at 1658.378 kb on + strand, within PfGW456L13_1508at 1658.378 kb on + strand, within PfGW456L13_1508at 1658.378 kb on + strand, within PfGW456L13_1508at 1658.378 kb on + strand, within PfGW456L13_1508at 1658.378 kb on + strand, within PfGW456L13_1508at 1658.379 kb on - strand, within PfGW456L13_1508at 1658.379 kb on - strand, within PfGW456L13_1508at 1658.379 kb on - strand, within PfGW456L13_1508at 1658.601 kb on + strandat 1658.601 kb on + strandat 1658.601 kb on + strandat 1658.601 kb on + strandat 1658.601 kb on + strandat 1658.601 kb on + strandat 1658.601 kb on + strandat 1658.601 kb on + strandat 1658.601 kb on + strandat 1658.601 kb on + strandat 1658.601 kb on + strandat 1658.601 kb on + strandat 1658.602 kb on - strandat 1658.602 kb on - strandat 1658.602 kb on - strandat 1658.602 kb on - strandat 1658.602 kb on - strandat 1658.612 kb on + strandat 1658.612 kb on + strandat 1658.612 kb on + strandat 1658.612 kb on + strandat 1658.612 kb on + strandat 1658.612 kb on + strandat 1658.612 kb on + strandat 1658.613 kb on - strandat 1658.613 kb on - strandat 1658.613 kb on - strandat 1658.630 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,656,106 + -0.3
1,656,106 + +0.0
1,656,106 + -0.0
1,656,107 - +2.5
1,656,107 - -0.0
1,656,107 - -0.6
1,656,147 - +0.2
1,656,205 + -0.9
1,656,205 + -0.5
1,656,205 + +0.8
1,656,205 + +1.3
1,656,205 + +0.9
1,656,205 + +0.6
1,656,205 + +0.1
1,656,205 + +1.8
1,656,205 + +0.8
1,656,206 - +0.1
1,656,206 - -1.1
1,656,206 - +0.1
1,656,206 - -0.9
1,656,352 + PfGW456L13_1505 0.29 +0.5
1,656,353 - PfGW456L13_1505 0.29 -0.8
1,656,568 + PfGW456L13_1505 0.60 -0.4
1,656,568 + PfGW456L13_1505 0.60 -0.1
1,656,568 + PfGW456L13_1505 0.60 +0.4
1,656,568 + PfGW456L13_1505 0.60 +0.6
1,656,568 + PfGW456L13_1505 0.60 +1.3
1,656,568 + PfGW456L13_1505 0.60 -1.4
1,656,568 + PfGW456L13_1505 0.60 -0.4
1,656,568 + PfGW456L13_1505 0.60 -0.5
1,656,568 + PfGW456L13_1505 0.60 +0.4
1,656,569 - PfGW456L13_1505 0.61 -0.8
1,656,569 - PfGW456L13_1505 0.61 +0.4
1,656,569 - PfGW456L13_1505 0.61 +0.0
1,656,569 - PfGW456L13_1505 0.61 -1.0
1,656,569 - PfGW456L13_1505 0.61 +0.8
1,656,569 - PfGW456L13_1505 0.61 +0.7
1,656,569 - PfGW456L13_1505 0.61 +0.8
1,656,569 - PfGW456L13_1505 0.61 +0.2
1,656,570 + PfGW456L13_1505 0.61 +0.4
1,656,570 + PfGW456L13_1505 0.61 +0.2
1,656,571 - PfGW456L13_1505 0.61 -0.5
1,656,571 - PfGW456L13_1505 0.61 +1.0
1,656,571 - PfGW456L13_1505 0.61 -1.6
1,656,641 + PfGW456L13_1505 0.71 -1.5
1,656,641 + PfGW456L13_1505 0.71 +0.2
1,656,671 - PfGW456L13_1505 0.75 +0.1
1,656,694 + PfGW456L13_1505 0.79 -2.6
1,656,695 - PfGW456L13_1505 0.79 -0.2
1,656,695 - PfGW456L13_1505 0.79 +0.1
1,656,698 + PfGW456L13_1505 0.79 +0.2
1,656,698 + PfGW456L13_1505 0.79 +0.2
1,656,698 + PfGW456L13_1505 0.79 +1.0
1,656,698 + PfGW456L13_1505 0.79 -0.2
1,656,698 + PfGW456L13_1505 0.79 +0.8
1,656,698 + PfGW456L13_1505 0.79 -0.1
1,656,698 + PfGW456L13_1505 0.79 +0.6
1,656,698 + PfGW456L13_1505 0.79 -0.8
1,656,698 + PfGW456L13_1505 0.79 -0.7
1,656,698 + PfGW456L13_1505 0.79 +0.1
1,656,698 + PfGW456L13_1505 0.79 -1.2
1,656,698 + PfGW456L13_1505 0.79 +0.2
1,656,698 + PfGW456L13_1505 0.79 -0.1
1,656,698 + PfGW456L13_1505 0.79 +1.3
1,656,699 - PfGW456L13_1505 0.79 -0.5
1,656,699 - PfGW456L13_1505 0.79 -1.2
1,656,699 - PfGW456L13_1505 0.79 -0.3
1,656,699 - PfGW456L13_1505 0.79 +0.4
1,656,699 - PfGW456L13_1505 0.79 +0.5
1,656,699 - PfGW456L13_1505 0.79 -0.5
1,656,699 - PfGW456L13_1505 0.79 -0.1
1,656,699 - PfGW456L13_1505 0.79 -1.2
1,656,699 - PfGW456L13_1505 0.79 -0.2
1,656,699 - PfGW456L13_1505 0.79 +0.4
1,656,699 - PfGW456L13_1505 0.79 -0.8
1,656,699 - PfGW456L13_1505 0.79 -1.6
1,656,699 - PfGW456L13_1505 0.79 +0.1
1,656,699 - PfGW456L13_1505 0.79 +0.4
1,656,699 - PfGW456L13_1505 0.79 +0.4
1,656,799 + +0.4
1,656,799 + +0.6
1,656,799 + +0.8
1,657,691 - +0.4
1,657,719 - +0.7
1,657,719 - +0.4
1,657,730 - +0.0
1,657,730 - -0.1
1,657,775 + -0.4
1,657,775 + +0.1
1,657,776 - +0.5
1,657,997 + PfGW456L13_1508 0.35 +0.8
1,658,092 + PfGW456L13_1508 0.46 -0.3
1,658,092 + PfGW456L13_1508 0.46 +1.2
1,658,093 - PfGW456L13_1508 0.46 -0.3
1,658,093 - PfGW456L13_1508 0.46 +0.7
1,658,093 - PfGW456L13_1508 0.46 +0.0
1,658,104 + PfGW456L13_1508 0.47 -0.3
1,658,104 + +0.8
1,658,104 + PfGW456L13_1508 0.47 -0.2
1,658,104 + PfGW456L13_1508 0.47 -1.0
1,658,105 - PfGW456L13_1508 0.47 -0.1
1,658,297 + PfGW456L13_1508 0.69 -0.3
1,658,297 + PfGW456L13_1508 0.69 +0.6
1,658,297 + PfGW456L13_1508 0.69 -1.6
1,658,297 + PfGW456L13_1508 0.69 +0.3
1,658,297 + PfGW456L13_1508 0.69 -0.8
1,658,297 + PfGW456L13_1508 0.69 -1.1
1,658,297 + PfGW456L13_1508 0.69 +0.5
1,658,297 + PfGW456L13_1508 0.69 -0.4
1,658,297 + PfGW456L13_1508 0.69 -1.2
1,658,297 + PfGW456L13_1508 0.69 +1.0
1,658,297 + PfGW456L13_1508 0.69 +0.4
1,658,298 - PfGW456L13_1508 0.69 +0.4
1,658,298 - PfGW456L13_1508 0.69 -0.8
1,658,298 - PfGW456L13_1508 0.69 -0.8
1,658,298 - PfGW456L13_1508 0.69 -0.8
1,658,298 - PfGW456L13_1508 0.69 +0.0
1,658,298 - PfGW456L13_1508 0.69 +0.6
1,658,298 - PfGW456L13_1508 0.69 +0.8
1,658,298 - PfGW456L13_1508 0.69 -0.8
1,658,298 - PfGW456L13_1508 0.69 +1.3
1,658,378 + PfGW456L13_1508 0.78 -0.3
1,658,378 + PfGW456L13_1508 0.78 -1.5
1,658,378 + PfGW456L13_1508 0.78 +0.8
1,658,378 + PfGW456L13_1508 0.78 +1.1
1,658,378 + PfGW456L13_1508 0.78 -0.0
1,658,379 - PfGW456L13_1508 0.79 -0.3
1,658,379 - PfGW456L13_1508 0.79 +1.1
1,658,379 - PfGW456L13_1508 0.79 -0.2
1,658,601 + +0.2
1,658,601 + +0.8
1,658,601 + -1.7
1,658,601 + +0.2
1,658,601 + +0.2
1,658,601 + -0.3
1,658,601 + +1.2
1,658,601 + -0.6
1,658,601 + -1.9
1,658,601 + +0.5
1,658,601 + +0.4
1,658,601 + -0.5
1,658,602 - +0.2
1,658,602 - +1.6
1,658,602 - +0.4
1,658,602 - -0.1
1,658,602 - +0.0
1,658,612 + +0.8
1,658,612 + +0.3
1,658,612 + +0.5
1,658,612 + +0.8
1,658,612 + +0.4
1,658,612 + -0.0
1,658,612 + +0.5
1,658,613 - -0.3
1,658,613 - -0.1
1,658,613 - -1.3
1,658,630 - +0.7

Or see this region's nucleotide sequence