Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1226

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1224 and PfGW456L13_1225 are separated by 247 nucleotidesPfGW456L13_1225 and PfGW456L13_1226 are separated by 191 nucleotidesPfGW456L13_1226 and PfGW456L13_1227 are separated by 178 nucleotides PfGW456L13_1224 - Vfr transcriptional regulator / Cyclic AMP receptor protein, at 1,366,657 to 1,367,301 _1224 PfGW456L13_1225 - OsmC/Ohr family protein, at 1,367,549 to 1,367,971 _1225 PfGW456L13_1226 - S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A, at 1,368,163 to 1,369,002 _1226 PfGW456L13_1227 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 1,369,181 to 1,369,897 _1227 Position (kb) 1368 1369 1370Strain fitness (log2 ratio) -3 -2 -1 0 1at 1367.292 kb on + strandat 1367.293 kb on - strandat 1367.293 kb on - strandat 1367.293 kb on - strandat 1367.293 kb on - strandat 1367.307 kb on + strandat 1367.344 kb on + strandat 1367.372 kb on + strandat 1367.372 kb on + strandat 1367.373 kb on - strandat 1367.373 kb on - strandat 1367.384 kb on - strandat 1367.384 kb on - strandat 1367.384 kb on - strandat 1367.384 kb on - strandat 1367.417 kb on + strandat 1367.436 kb on + strandat 1367.437 kb on - strandat 1367.448 kb on + strandat 1367.448 kb on + strandat 1367.448 kb on + strandat 1367.448 kb on + strandat 1367.448 kb on + strandat 1367.448 kb on + strandat 1367.448 kb on + strandat 1367.448 kb on + strandat 1367.449 kb on - strandat 1367.452 kb on + strandat 1367.452 kb on + strandat 1367.452 kb on + strandat 1367.452 kb on + strandat 1367.452 kb on + strandat 1367.453 kb on - strandat 1367.453 kb on - strandat 1367.453 kb on - strandat 1367.453 kb on - strandat 1367.467 kb on + strandat 1367.467 kb on + strandat 1367.467 kb on + strandat 1367.467 kb on + strandat 1367.467 kb on + strandat 1367.467 kb on + strandat 1367.467 kb on + strandat 1367.468 kb on - strandat 1367.474 kb on + strandat 1367.475 kb on - strandat 1367.510 kb on + strandat 1367.510 kb on + strandat 1367.511 kb on - strandat 1367.511 kb on - strandat 1367.511 kb on - strandat 1367.529 kb on + strandat 1367.530 kb on - strandat 1367.531 kb on + strandat 1367.531 kb on + strandat 1367.532 kb on - strandat 1367.532 kb on - strandat 1367.650 kb on + strand, within PfGW456L13_1225at 1367.894 kb on + strand, within PfGW456L13_1225at 1367.894 kb on + strand, within PfGW456L13_1225at 1367.894 kb on + strand, within PfGW456L13_1225at 1367.894 kb on + strand, within PfGW456L13_1225at 1367.894 kb on + strand, within PfGW456L13_1225at 1367.894 kb on + strand, within PfGW456L13_1225at 1367.894 kb on + strand, within PfGW456L13_1225at 1367.894 kb on + strand, within PfGW456L13_1225at 1367.894 kb on + strand, within PfGW456L13_1225at 1367.894 kb on + strand, within PfGW456L13_1225at 1367.894 kb on + strand, within PfGW456L13_1225at 1367.895 kb on - strand, within PfGW456L13_1225at 1367.895 kb on - strand, within PfGW456L13_1225at 1367.895 kb on - strand, within PfGW456L13_1225at 1367.895 kb on - strand, within PfGW456L13_1225at 1367.895 kb on - strand, within PfGW456L13_1225at 1367.895 kb on - strand, within PfGW456L13_1225at 1367.895 kb on - strand, within PfGW456L13_1225at 1367.938 kb on + strandat 1367.939 kb on - strandat 1367.939 kb on - strandat 1367.949 kb on - strandat 1367.985 kb on + strandat 1367.986 kb on - strandat 1367.986 kb on - strandat 1367.990 kb on + strandat 1367.990 kb on + strandat 1367.990 kb on + strandat 1367.990 kb on + strandat 1367.990 kb on + strandat 1367.991 kb on - strandat 1367.991 kb on - strandat 1367.991 kb on - strandat 1367.991 kb on - strandat 1367.991 kb on - strandat 1367.991 kb on - strandat 1367.991 kb on - strandat 1368.033 kb on + strandat 1368.034 kb on - strandat 1368.055 kb on + strandat 1368.132 kb on + strandat 1368.195 kb on + strandat 1368.195 kb on + strandat 1368.195 kb on + strandat 1368.195 kb on + strandat 1368.195 kb on + strandat 1368.196 kb on - strandat 1368.196 kb on - strandat 1368.196 kb on - strandat 1368.196 kb on - strandat 1368.196 kb on - strandat 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.274 kb on + strand, within PfGW456L13_1226at 1368.275 kb on - strand, within PfGW456L13_1226at 1368.275 kb on - strand, within PfGW456L13_1226at 1368.275 kb on - strand, within PfGW456L13_1226at 1368.275 kb on - strand, within PfGW456L13_1226at 1368.275 kb on - strand, within PfGW456L13_1226at 1368.275 kb on - strand, within PfGW456L13_1226at 1368.275 kb on - strand, within PfGW456L13_1226at 1368.275 kb on - strand, within PfGW456L13_1226at 1368.275 kb on - strand, within PfGW456L13_1226at 1368.275 kb on - strand, within PfGW456L13_1226at 1368.287 kb on - strand, within PfGW456L13_1226at 1368.316 kb on + strand, within PfGW456L13_1226at 1368.316 kb on + strand, within PfGW456L13_1226at 1368.316 kb on + strand, within PfGW456L13_1226at 1368.317 kb on - strand, within PfGW456L13_1226at 1368.317 kb on - strand, within PfGW456L13_1226at 1368.317 kb on - strand, within PfGW456L13_1226at 1368.317 kb on - strand, within PfGW456L13_1226at 1368.325 kb on + strand, within PfGW456L13_1226at 1368.325 kb on + strand, within PfGW456L13_1226at 1368.326 kb on - strand, within PfGW456L13_1226at 1368.326 kb on - strand, within PfGW456L13_1226at 1368.334 kb on - strand, within PfGW456L13_1226at 1368.334 kb on - strand, within PfGW456L13_1226at 1368.334 kb on - strand, within PfGW456L13_1226at 1368.340 kb on + strand, within PfGW456L13_1226at 1368.340 kb on + strand, within PfGW456L13_1226at 1368.340 kb on + strand, within PfGW456L13_1226at 1368.340 kb on + strand, within PfGW456L13_1226at 1368.341 kb on - strand, within PfGW456L13_1226at 1368.341 kb on - strand, within PfGW456L13_1226at 1368.341 kb on - strand, within PfGW456L13_1226at 1368.341 kb on - strand, within PfGW456L13_1226at 1368.385 kb on - strand, within PfGW456L13_1226at 1368.424 kb on + strand, within PfGW456L13_1226at 1368.424 kb on + strand, within PfGW456L13_1226at 1368.425 kb on - strand, within PfGW456L13_1226at 1368.425 kb on - strand, within PfGW456L13_1226at 1368.707 kb on - strand, within PfGW456L13_1226at 1368.784 kb on + strand, within PfGW456L13_1226at 1368.784 kb on + strand, within PfGW456L13_1226at 1368.784 kb on + strand, within PfGW456L13_1226at 1368.785 kb on - strand, within PfGW456L13_1226at 1368.785 kb on - strand, within PfGW456L13_1226at 1368.785 kb on - strand, within PfGW456L13_1226at 1368.785 kb on - strand, within PfGW456L13_1226at 1368.785 kb on - strand, within PfGW456L13_1226at 1368.785 kb on - strand, within PfGW456L13_1226at 1368.785 kb on - strand, within PfGW456L13_1226at 1368.802 kb on + strand, within PfGW456L13_1226at 1368.802 kb on + strand, within PfGW456L13_1226at 1368.802 kb on + strand, within PfGW456L13_1226at 1368.802 kb on + strand, within PfGW456L13_1226at 1368.802 kb on + strand, within PfGW456L13_1226at 1368.802 kb on + strand, within PfGW456L13_1226at 1368.802 kb on + strand, within PfGW456L13_1226at 1368.802 kb on + strand, within PfGW456L13_1226at 1368.803 kb on - strand, within PfGW456L13_1226at 1368.803 kb on - strand, within PfGW456L13_1226at 1368.803 kb on - strand, within PfGW456L13_1226at 1368.803 kb on - strand, within PfGW456L13_1226at 1368.811 kb on + strand, within PfGW456L13_1226at 1368.835 kb on + strand, within PfGW456L13_1226at 1368.836 kb on - strand, within PfGW456L13_1226at 1368.888 kb on + strand, within PfGW456L13_1226at 1368.889 kb on - strand, within PfGW456L13_1226at 1368.892 kb on + strand, within PfGW456L13_1226at 1368.892 kb on + strand, within PfGW456L13_1226at 1368.892 kb on + strand, within PfGW456L13_1226at 1368.892 kb on + strand, within PfGW456L13_1226at 1368.892 kb on + strand, within PfGW456L13_1226at 1368.892 kb on + strand, within PfGW456L13_1226at 1368.892 kb on + strand, within PfGW456L13_1226at 1368.892 kb on + strand, within PfGW456L13_1226at 1368.892 kb on + strand, within PfGW456L13_1226at 1368.892 kb on + strand, within PfGW456L13_1226at 1368.892 kb on + strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.893 kb on - strand, within PfGW456L13_1226at 1368.993 kb on + strandat 1369.072 kb on - strandat 1369.072 kb on - strandat 1369.072 kb on - strandat 1369.072 kb on - strandat 1369.861 kb on + strandat 1369.862 kb on - strandat 1369.992 kb on + strandat 1369.992 kb on + strandat 1369.992 kb on + strandat 1369.992 kb on + strandat 1369.992 kb on + strandat 1369.992 kb on + strandat 1369.992 kb on + strandat 1369.993 kb on - strandat 1369.993 kb on - strandat 1369.993 kb on - strandat 1369.993 kb on - strandat 1369.993 kb on - strandat 1369.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,367,292 + +0.7
1,367,293 - +0.4
1,367,293 - +0.1
1,367,293 - -0.3
1,367,293 - -0.7
1,367,307 + -0.3
1,367,344 + +0.1
1,367,372 + +0.0
1,367,372 + -0.3
1,367,373 - -0.2
1,367,373 - +0.5
1,367,384 - +0.6
1,367,384 - +1.2
1,367,384 - +0.3
1,367,384 - -0.0
1,367,417 + +0.3
1,367,436 + +0.2
1,367,437 - -0.4
1,367,448 + -0.4
1,367,448 + +0.8
1,367,448 + +1.1
1,367,448 + -0.5
1,367,448 + -0.5
1,367,448 + +0.0
1,367,448 + -0.3
1,367,448 + -0.8
1,367,449 - -0.5
1,367,452 + -0.0
1,367,452 + -0.5
1,367,452 + +0.4
1,367,452 + +0.3
1,367,452 + -1.6
1,367,453 - +0.3
1,367,453 - -0.3
1,367,453 - +0.6
1,367,453 - -0.8
1,367,467 + -0.1
1,367,467 + -0.2
1,367,467 + +0.9
1,367,467 + +1.4
1,367,467 + +0.9
1,367,467 + +0.0
1,367,467 + +0.5
1,367,468 - -1.0
1,367,474 + +0.2
1,367,475 - +1.3
1,367,510 + +0.6
1,367,510 + +0.4
1,367,511 - +0.2
1,367,511 - +0.8
1,367,511 - -0.6
1,367,529 + +0.2
1,367,530 - +0.1
1,367,531 + +0.4
1,367,531 + -1.1
1,367,532 - +0.2
1,367,532 - +0.8
1,367,650 + PfGW456L13_1225 0.24 -0.9
1,367,894 + PfGW456L13_1225 0.82 -0.7
1,367,894 + PfGW456L13_1225 0.82 +1.5
1,367,894 + PfGW456L13_1225 0.82 -0.1
1,367,894 + PfGW456L13_1225 0.82 -0.8
1,367,894 + PfGW456L13_1225 0.82 +0.2
1,367,894 + PfGW456L13_1225 0.82 +0.3
1,367,894 + PfGW456L13_1225 0.82 -0.7
1,367,894 + PfGW456L13_1225 0.82 +0.6
1,367,894 + PfGW456L13_1225 0.82 -0.4
1,367,894 + PfGW456L13_1225 0.82 -2.1
1,367,894 + PfGW456L13_1225 0.82 +0.5
1,367,895 - PfGW456L13_1225 0.82 -0.7
1,367,895 - PfGW456L13_1225 0.82 -1.2
1,367,895 - PfGW456L13_1225 0.82 -1.0
1,367,895 - PfGW456L13_1225 0.82 +0.3
1,367,895 - PfGW456L13_1225 0.82 +1.3
1,367,895 - PfGW456L13_1225 0.82 +0.8
1,367,895 - PfGW456L13_1225 0.82 +0.0
1,367,938 + -0.8
1,367,939 - -0.4
1,367,939 - -0.8
1,367,949 - +1.0
1,367,985 + -1.0
1,367,986 - +0.2
1,367,986 - -0.4
1,367,990 + -0.6
1,367,990 + +0.0
1,367,990 + +0.7
1,367,990 + -0.3
1,367,990 + +0.2
1,367,991 - +0.1
1,367,991 - -1.6
1,367,991 - +0.2
1,367,991 - +0.2
1,367,991 - +0.6
1,367,991 - -0.3
1,367,991 - -0.1
1,368,033 + -0.7
1,368,034 - -0.2
1,368,055 + +0.1
1,368,132 + +0.6
1,368,195 + -0.6
1,368,195 + +0.9
1,368,195 + -0.0
1,368,195 + -0.0
1,368,195 + +0.2
1,368,196 - -0.8
1,368,196 - -0.7
1,368,196 - -0.1
1,368,196 - -1.7
1,368,196 - -1.0
1,368,274 + PfGW456L13_1226 0.13 +0.9
1,368,274 + PfGW456L13_1226 0.13 -0.6
1,368,274 + PfGW456L13_1226 0.13 -0.3
1,368,274 + PfGW456L13_1226 0.13 +0.6
1,368,274 + PfGW456L13_1226 0.13 -3.1
1,368,274 + PfGW456L13_1226 0.13 +0.9
1,368,274 + PfGW456L13_1226 0.13 -0.0
1,368,274 + PfGW456L13_1226 0.13 -0.6
1,368,274 + PfGW456L13_1226 0.13 -1.3
1,368,274 + PfGW456L13_1226 0.13 -0.8
1,368,274 + PfGW456L13_1226 0.13 -1.8
1,368,274 + PfGW456L13_1226 0.13 -1.4
1,368,274 + PfGW456L13_1226 0.13 -1.1
1,368,274 + PfGW456L13_1226 0.13 -0.6
1,368,274 + PfGW456L13_1226 0.13 -0.6
1,368,274 + PfGW456L13_1226 0.13 +0.0
1,368,274 + PfGW456L13_1226 0.13 +0.8
1,368,275 - PfGW456L13_1226 0.13 -0.9
1,368,275 - PfGW456L13_1226 0.13 -1.3
1,368,275 - PfGW456L13_1226 0.13 -0.1
1,368,275 - PfGW456L13_1226 0.13 -1.7
1,368,275 - PfGW456L13_1226 0.13 -1.4
1,368,275 - PfGW456L13_1226 0.13 -0.9
1,368,275 - PfGW456L13_1226 0.13 -0.3
1,368,275 - PfGW456L13_1226 0.13 -1.1
1,368,275 - PfGW456L13_1226 0.13 -1.6
1,368,275 - PfGW456L13_1226 0.13 -0.8
1,368,287 - PfGW456L13_1226 0.15 -0.4
1,368,316 + PfGW456L13_1226 0.18 +0.3
1,368,316 + PfGW456L13_1226 0.18 -0.0
1,368,316 + PfGW456L13_1226 0.18 -2.0
1,368,317 - PfGW456L13_1226 0.18 -1.2
1,368,317 - PfGW456L13_1226 0.18 -0.1
1,368,317 - PfGW456L13_1226 0.18 -2.1
1,368,317 - PfGW456L13_1226 0.18 -1.3
1,368,325 + PfGW456L13_1226 0.19 -1.7
1,368,325 + PfGW456L13_1226 0.19 -0.7
1,368,326 - PfGW456L13_1226 0.19 -1.2
1,368,326 - PfGW456L13_1226 0.19 -1.4
1,368,334 - PfGW456L13_1226 0.20 -2.8
1,368,334 - PfGW456L13_1226 0.20 -1.1
1,368,334 - PfGW456L13_1226 0.20 -2.2
1,368,340 + PfGW456L13_1226 0.21 -0.7
1,368,340 + PfGW456L13_1226 0.21 -2.7
1,368,340 + PfGW456L13_1226 0.21 -1.3
1,368,340 + PfGW456L13_1226 0.21 -0.7
1,368,341 - PfGW456L13_1226 0.21 -0.4
1,368,341 - PfGW456L13_1226 0.21 -1.5
1,368,341 - PfGW456L13_1226 0.21 -1.8
1,368,341 - PfGW456L13_1226 0.21 -1.6
1,368,385 - PfGW456L13_1226 0.26 -1.2
1,368,424 + PfGW456L13_1226 0.31 +0.6
1,368,424 + PfGW456L13_1226 0.31 -3.2
1,368,425 - PfGW456L13_1226 0.31 -1.4
1,368,425 - PfGW456L13_1226 0.31 -0.3
1,368,707 - PfGW456L13_1226 0.65 -1.6
1,368,784 + PfGW456L13_1226 0.74 -1.0
1,368,784 + PfGW456L13_1226 0.74 -1.2
1,368,784 + PfGW456L13_1226 0.74 -0.7
1,368,785 - PfGW456L13_1226 0.74 -0.9
1,368,785 - PfGW456L13_1226 0.74 -1.4
1,368,785 - PfGW456L13_1226 0.74 -0.6
1,368,785 - PfGW456L13_1226 0.74 +0.2
1,368,785 - PfGW456L13_1226 0.74 -1.0
1,368,785 - PfGW456L13_1226 0.74 -0.4
1,368,785 - PfGW456L13_1226 0.74 -0.5
1,368,802 + PfGW456L13_1226 0.76 -0.4
1,368,802 + PfGW456L13_1226 0.76 -0.9
1,368,802 + PfGW456L13_1226 0.76 -1.5
1,368,802 + PfGW456L13_1226 0.76 -0.2
1,368,802 + PfGW456L13_1226 0.76 -0.4
1,368,802 + PfGW456L13_1226 0.76 +1.6
1,368,802 + PfGW456L13_1226 0.76 -0.5
1,368,802 + PfGW456L13_1226 0.76 -1.6
1,368,803 - PfGW456L13_1226 0.76 -1.3
1,368,803 - PfGW456L13_1226 0.76 -2.5
1,368,803 - PfGW456L13_1226 0.76 -0.6
1,368,803 - PfGW456L13_1226 0.76 -1.7
1,368,811 + PfGW456L13_1226 0.77 -1.1
1,368,835 + PfGW456L13_1226 0.80 -1.7
1,368,836 - PfGW456L13_1226 0.80 -2.6
1,368,888 + PfGW456L13_1226 0.86 -1.5
1,368,889 - PfGW456L13_1226 0.86 +0.5
1,368,892 + PfGW456L13_1226 0.87 -0.1
1,368,892 + PfGW456L13_1226 0.87 -0.6
1,368,892 + PfGW456L13_1226 0.87 -0.8
1,368,892 + PfGW456L13_1226 0.87 +0.1
1,368,892 + PfGW456L13_1226 0.87 -1.6
1,368,892 + PfGW456L13_1226 0.87 -1.0
1,368,892 + PfGW456L13_1226 0.87 -1.6
1,368,892 + PfGW456L13_1226 0.87 -0.4
1,368,892 + PfGW456L13_1226 0.87 -0.5
1,368,892 + PfGW456L13_1226 0.87 -0.7
1,368,892 + PfGW456L13_1226 0.87 +0.4
1,368,893 - PfGW456L13_1226 0.87 -1.0
1,368,893 - PfGW456L13_1226 0.87 -0.4
1,368,893 - PfGW456L13_1226 0.87 -0.8
1,368,893 - PfGW456L13_1226 0.87 -1.0
1,368,893 - PfGW456L13_1226 0.87 -1.1
1,368,893 - PfGW456L13_1226 0.87 -0.6
1,368,893 - PfGW456L13_1226 0.87 +0.6
1,368,893 - PfGW456L13_1226 0.87 -0.9
1,368,893 - PfGW456L13_1226 0.87 +0.4
1,368,893 - PfGW456L13_1226 0.87 -2.3
1,368,893 - PfGW456L13_1226 0.87 -2.0
1,368,893 - PfGW456L13_1226 0.87 -1.0
1,368,893 - PfGW456L13_1226 0.87 -1.3
1,368,893 - PfGW456L13_1226 0.87 -0.5
1,368,893 - PfGW456L13_1226 0.87 -1.6
1,368,993 + -1.2
1,369,072 - -0.6
1,369,072 - +0.4
1,369,072 - -0.1
1,369,072 - -0.4
1,369,861 + -1.1
1,369,862 - +0.3
1,369,992 + +1.1
1,369,992 + -0.4
1,369,992 + +0.3
1,369,992 + +0.2
1,369,992 + +0.0
1,369,992 + +0.9
1,369,992 + +0.1
1,369,993 - +0.7
1,369,993 - -1.0
1,369,993 - -0.8
1,369,993 - -0.6
1,369,993 - +0.7
1,369,993 - -0.2

Or see this region's nucleotide sequence