Strain Fitness in Pseudomonas sp. RS175 around PFR28_03969

Experiment: Vanillic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillic Acid (C) 2.5 mM
4,552,203	+				-1.8
4,552,203	+				+0.2
4,552,204	-				+3.3
4,552,204	-				+1.0
4,552,204	-				-0.5
4,552,204	-				-0.0
4,552,204	-				-1.2
4,552,204	-				-0.9
4,552,239	+				-0.6
4,552,239	+				-0.4
4,552,239	+				+1.5
4,552,239	+				-0.6
4,552,239	+				+2.3
4,552,240	-				-1.0
4,552,240	-				+3.3
4,552,240	-				+0.4
4,552,240	-				-0.0
4,552,240	-				+3.3
4,552,240	-				+1.3
4,552,240	-				-0.4
4,552,240	-				+0.6
4,552,240	-				-1.2
4,552,240	-				-2.9
4,552,504	+				+1.4
4,552,504	+				-0.7
4,552,504	+				-2.1
4,552,504	+				+0.1
4,552,504	+				-1.7
4,552,504	+				-0.9
4,552,504	+				-1.5
4,552,504	+				+1.3
4,552,504	+				-0.8
4,552,505	-				+3.3
4,552,505	-				-0.2
4,552,505	-				+0.6
4,552,505	-				+0.6
4,552,505	-				-1.9
4,552,505	-				+0.1
4,552,505	-				+1.1
4,552,505	-				+2.5
4,552,505	-				-0.1
4,552,620	+		PFR28_03968	0.25	-0.7
4,552,620	+		PFR28_03968	0.25	-1.1
4,552,620	+		PFR28_03968	0.25	+1.1
4,552,621	-		PFR28_03968	0.25	+0.9
4,552,697	+		PFR28_03968	0.35	-0.2
4,552,763	+		PFR28_03968	0.44	+2.3
4,552,764	-		PFR28_03968	0.44	+1.0
4,552,764	-		PFR28_03968	0.44	+0.0
4,552,764	-		PFR28_03968	0.44	+0.0
4,552,858	+		PFR28_03968	0.56	+0.3
4,552,858	+		PFR28_03968	0.56	+0.8
4,552,921	+		PFR28_03968	0.65	-0.1
4,552,922	-		PFR28_03968	0.65	+1.1
4,552,922	-		PFR28_03968	0.65	+2.7
4,553,089	-		PFR28_03968	0.87	+0.1
4,553,180	+				-1.9
4,553,180	+				-2.6
4,553,203	+				-1.1
4,553,203	+				+0.0
4,553,204	-				-0.3
4,553,207	+				+1.5
4,553,207	+				-1.1
4,553,207	+				-1.2
4,553,207	+				-0.9
4,553,208	-				+2.9
4,553,208	-				+2.3
4,553,208	-				-1.2
4,553,208	-				+0.2
4,553,208	-				+0.5
4,553,215	+				+1.5
4,553,285	+				-0.4
4,553,285	+				+1.0
4,553,285	+				+0.6
4,553,285	+				+0.1
4,553,285	+				+1.1
4,553,285	+				-0.2
4,553,285	+				+0.6
4,553,285	+				-2.3
4,553,286	-				-0.2
4,553,286	-				-1.1
4,553,286	-				-1.0
4,553,286	-				+0.6
4,553,286	-				-0.4
4,553,286	-				+2.0
4,553,338	+		PFR28_03969	0.14	+1.7
4,553,339	-		PFR28_03969	0.14	+1.0
4,553,339	-		PFR28_03969	0.14	-0.7
4,553,339	-		PFR28_03969	0.14	+0.7
4,553,339	-		PFR28_03969	0.14	+0.0
4,553,447	+		PFR28_03969	0.24	-1.4
4,553,447	+		PFR28_03969	0.24	+0.5
4,553,447	+		PFR28_03969	0.24	+0.0
4,553,448	-		PFR28_03969	0.24	+1.2
4,553,448	-		PFR28_03969	0.24	+0.6
4,553,448	-		PFR28_03969	0.24	-1.4
4,553,448	-		PFR28_03969	0.24	-0.4
4,553,448	-		PFR28_03969	0.24	-0.9
4,553,448	-		PFR28_03969	0.24	+2.5
4,553,448	-		PFR28_03969	0.24	-0.8
4,553,477	+		PFR28_03969	0.27	+1.6
4,553,567	+		PFR28_03969	0.35	+0.6
4,553,567	+		PFR28_03969	0.35	-1.2
4,553,568	-		PFR28_03969	0.35	+0.4
4,553,568	-		PFR28_03969	0.35	+0.5
4,553,603	+		PFR28_03969	0.38	+0.1
4,553,604	-		PFR28_03969	0.38	-2.2
4,553,651	+		PFR28_03969	0.43	-0.0
4,553,651	+		PFR28_03969	0.43	-1.6
4,553,651	+		PFR28_03969	0.43	-1.1
4,553,652	-		PFR28_03969	0.43	+1.6
4,553,652	-		PFR28_03969	0.43	+0.4
4,553,859	-		PFR28_03969	0.61	+0.1
4,553,978	+		PFR28_03969	0.72	-1.0
4,553,978	+		PFR28_03969	0.72	+1.0
4,553,978	+		PFR28_03969	0.72	+1.1
4,553,978	+		PFR28_03969	0.72	+0.2
4,553,978	+		PFR28_03969	0.72	-0.5
4,553,978	+		PFR28_03969	0.72	+1.0
4,553,978	+		PFR28_03969	0.72	-0.5
4,553,978	+		PFR28_03969	0.72	-1.4
4,553,978	+		PFR28_03969	0.72	+0.7
4,553,978	+		PFR28_03969	0.72	-1.1
4,553,978	+		PFR28_03969	0.72	+0.9
4,553,978	+		PFR28_03969	0.72	+2.3
4,553,979	-		PFR28_03969	0.72	-1.0
4,553,979	-		PFR28_03969	0.72	-0.5
4,553,979	-		PFR28_03969	0.72	+1.1
4,553,979	-		PFR28_03969	0.72	-0.5
4,553,979	-		PFR28_03969	0.72	-1.3
4,553,979	-		PFR28_03969	0.72	-1.2
4,553,979	-		PFR28_03969	0.72	+0.0
4,553,979	-		PFR28_03969	0.72	-0.2
4,553,979	-		PFR28_03969	0.72	+2.3
4,553,979	-		PFR28_03969	0.72	+0.4
4,553,979	-		PFR28_03969	0.72	-0.0
4,553,979	-		PFR28_03969	0.72	-0.4
4,554,035	+		PFR28_03969	0.77	+1.7
4,554,035	+		PFR28_03969	0.77	-0.9
4,554,108	+		PFR28_03969	0.84	-1.5
4,554,108	+		PFR28_03969	0.84	-0.3
4,554,119	+		PFR28_03969	0.85	-0.3
4,554,120	-		PFR28_03969	0.85	+0.6
4,554,120	-		PFR28_03969	0.85	-0.2
4,554,120	-		PFR28_03969	0.85	+1.3
4,554,120	-		PFR28_03969	0.85	+0.1
4,554,120	-		PFR28_03969	0.85	+1.2
4,554,120	-		PFR28_03969	0.85	+1.7
4,554,152	+		PFR28_03969	0.88	+3.3
4,554,152	+		PFR28_03969	0.88	+1.2
4,554,152	+		PFR28_03969	0.88	+0.6
4,554,152	+		PFR28_03969	0.88	-0.1
4,554,152	+		PFR28_03969	0.88	-0.6
4,554,153	-		PFR28_03969	0.88	+1.7
4,554,153	-		PFR28_03969	0.88	-0.8
4,554,153	-		PFR28_03969	0.88	-1.3
4,554,153	-		PFR28_03969	0.88	+0.9
4,554,153	-		PFR28_03969	0.88	+0.4
4,554,164	+		PFR28_03969	0.89	-0.2
4,554,260	-				+1.0
4,554,260	-				+0.6
4,554,299	+				+2.0
4,554,317	+				-0.2
4,554,317	+				-2.6
4,554,318	-				+1.7
4,554,318	-				-1.0
4,554,318	-				-2.4
4,554,392	+				+1.7
4,554,392	+				+1.3
4,554,392	+				+0.7
4,554,393	-				-0.4
4,554,393	-				-0.6
4,554,395	+				+0.1
4,554,396	-				+3.3
4,554,396	-				-0.0
4,554,396	-				-0.8
4,554,581	+		PFR28_03970	0.11	+0.4
4,554,668	+		PFR28_03970	0.20	+2.5
4,554,871	-		PFR28_03970	0.40	-0.9
4,554,871	-		PFR28_03970	0.40	+0.6
4,554,871	-		PFR28_03970	0.40	+0.5
4,554,979	-		PFR28_03970	0.51	+0.0
4,554,979	-		PFR28_03970	0.51	+1.1
4,554,979	-		PFR28_03970	0.51	+0.8
4,555,141	+		PFR28_03970	0.67	+0.5
4,555,142	-		PFR28_03970	0.67	+1.6