Strain Fitness in Pseudomonas sp. RS175 around PFR28_03547

Experiment: Vanillic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillic Acid (C) 2.5 mM
4,095,483	-		PFR28_03546	0.27	+0.1
4,095,587	+		PFR28_03546	0.36	-0.7
4,095,587	+		PFR28_03546	0.36	-0.5
4,095,587	+		PFR28_03546	0.36	-0.9
4,095,587	+		PFR28_03546	0.36	+2.0
4,095,587	+		PFR28_03546	0.36	+1.0
4,095,587	+		PFR28_03546	0.36	-2.9
4,095,587	+		PFR28_03546	0.36	-1.2
4,095,587	+		PFR28_03546	0.36	+0.3
4,095,588	-		PFR28_03546	0.37	-0.2
4,095,588	-		PFR28_03546	0.37	+0.7
4,095,588	-		PFR28_03546	0.37	-0.6
4,095,588	-		PFR28_03546	0.37	+0.3
4,095,588	-		PFR28_03546	0.37	-0.1
4,095,588	-		PFR28_03546	0.37	+0.5
4,095,636	-		PFR28_03546	0.41	+2.3
4,095,636	-		PFR28_03546	0.41	-1.3
4,095,749	-		PFR28_03546	0.51	+1.5
4,095,923	+		PFR28_03546	0.66	+1.1
4,095,923	+		PFR28_03546	0.66	-0.5
4,095,924	-		PFR28_03546	0.66	+0.0
4,095,924	-		PFR28_03546	0.66	-1.1
4,095,924	-		PFR28_03546	0.66	-1.1
4,095,924	-		PFR28_03546	0.66	+0.8
4,095,924	-		PFR28_03546	0.66	-0.3
4,095,924	-		PFR28_03546	0.66	+0.6
4,095,924	-		PFR28_03546	0.66	+0.1
4,095,924	-		PFR28_03546	0.66	-1.0
4,095,924	-		PFR28_03546	0.66	+0.2
4,095,924	-		PFR28_03546	0.66	+0.5
4,095,924	-		PFR28_03546	0.66	+2.0
4,095,924	-		PFR28_03546	0.66	+1.2
4,096,028	+		PFR28_03546	0.76	-1.5
4,096,028	+		PFR28_03546	0.76	-1.0
4,096,028	+		PFR28_03546	0.76	-1.2
4,096,028	+		PFR28_03546	0.76	-2.2
4,096,028	+		PFR28_03546	0.76	+0.1
4,096,028	+		PFR28_03546	0.76	-0.5
4,096,028	+		PFR28_03546	0.76	-0.6
4,096,028	+		PFR28_03546	0.76	-1.8
4,096,029	-		PFR28_03546	0.76	+0.8
4,096,029	-		PFR28_03546	0.76	+0.7
4,096,029	-		PFR28_03546	0.76	+1.1
4,096,425	+				-2.7
4,096,465	+		PFR28_03547	0.11	-1.2
4,096,465	+		PFR28_03547	0.11	-0.6
4,096,465	+		PFR28_03547	0.11	-0.0
4,096,465	+		PFR28_03547	0.11	-0.6
4,096,466	-		PFR28_03547	0.12	-0.2
4,096,516	+		PFR28_03547	0.20	-0.2
4,096,516	+		PFR28_03547	0.20	-0.3
4,096,516	+		PFR28_03547	0.20	-1.0
4,096,516	+		PFR28_03547	0.20	+0.6
4,096,516	+		PFR28_03547	0.20	+0.2
4,096,516	+		PFR28_03547	0.20	-0.8
4,096,517	-		PFR28_03547	0.20	-1.7
4,096,517	-		PFR28_03547	0.20	-2.1
4,096,517	-		PFR28_03547	0.20	+0.4
4,096,517	-		PFR28_03547	0.20	-1.9
4,096,599	+		PFR28_03547	0.33	+0.9
4,096,600	-		PFR28_03547	0.33	-3.1
4,096,600	-		PFR28_03547	0.33	+0.3
4,096,600	-		PFR28_03547	0.33	-2.8
4,096,612	+		PFR28_03547	0.35	-0.5
4,096,713	+		PFR28_03547	0.51	-0.8
4,096,818	+		PFR28_03547	0.68	+0.3
4,096,818	+		PFR28_03547	0.68	-1.1
4,096,819	-		PFR28_03547	0.68	-0.0
4,096,951	+		PFR28_03547	0.89	-0.6
4,096,951	+		PFR28_03547	0.89	+2.1
4,096,951	+		PFR28_03547	0.89	-1.9
4,096,951	+		PFR28_03547	0.89	+2.6
4,096,951	+		PFR28_03547	0.89	-1.8
4,096,951	+		PFR28_03547	0.89	+0.1
4,096,951	+		PFR28_03547	0.89	-0.8
4,096,951	+		PFR28_03547	0.89	+0.3
4,096,951	+		PFR28_03547	0.89	-1.8
4,096,951	+		PFR28_03547	0.89	-0.4
4,096,951	+		PFR28_03547	0.89	-0.1
4,096,951	+		PFR28_03547	0.89	-1.4
4,096,951	+		PFR28_03547	0.89	-1.7
4,096,952	-		PFR28_03547	0.89	-0.6
4,096,952	-		PFR28_03547	0.89	-1.1
4,096,952	-		PFR28_03547	0.89	-0.6
4,096,952	-		PFR28_03547	0.89	-0.5
4,096,952	-		PFR28_03547	0.89	+0.2
4,096,952	-		PFR28_03547	0.89	-0.9
4,096,952	-		PFR28_03547	0.89	-1.0
4,096,952	-		PFR28_03547	0.89	-2.6
4,096,952	-		PFR28_03547	0.89	-2.2
4,096,952	-		PFR28_03547	0.89	+3.4
4,096,952	-		PFR28_03547	0.89	-2.3
4,096,952	-		PFR28_03547	0.89	-1.2
4,096,952	-		PFR28_03547	0.89	-0.8
4,096,952	-		PFR28_03547	0.89	-2.0
4,096,952	-		PFR28_03547	0.89	-1.3
4,096,952	-		PFR28_03547	0.89	-0.8
4,096,990	+				+0.3
4,096,990	+				-0.5
4,096,990	+				-1.6
4,096,990	+				+2.4
4,096,990	+				-0.2
4,096,990	+				-1.3
4,096,990	+				-2.8
4,096,991	-				-0.2
4,096,991	-				-1.3
4,096,991	-				+1.6
4,096,991	-				-1.6
4,097,017	+				-0.0
4,097,027	-				+0.1
4,097,028	+				+1.6
4,097,028	+				+0.5
4,097,028	+				+0.5
4,097,028	+				+1.0
4,097,028	+				+2.1
4,097,028	+				-0.6
4,097,029	-				-0.0
4,097,082	+				+0.8
4,097,083	-				-1.3
4,097,083	-				-1.4
4,097,083	-				+0.6
4,097,152	+				+3.4
4,097,152	+				-1.3
4,097,152	+				-3.6
4,097,152	+				-0.6
4,097,153	-				+1.1
4,097,153	-				+2.5
4,097,153	-				-0.6
4,097,156	+				-0.3
4,097,170	+				-0.4
4,097,171	-				+3.1
4,097,191	+				+0.0
4,097,192	-				+0.9
4,097,192	-				+0.2
4,097,250	-		PFR28_03548	0.14	-1.3
4,097,250	-		PFR28_03548	0.14	-0.2
4,097,250	-		PFR28_03548	0.14	+0.5
4,097,252	+		PFR28_03548	0.14	-1.5
4,097,290	+		PFR28_03548	0.19	-2.3
4,097,291	-		PFR28_03548	0.19	+1.8
4,097,327	-		PFR28_03548	0.24	+0.0
4,097,416	+		PFR28_03548	0.35	-0.7
4,097,416	+		PFR28_03548	0.35	+3.1
4,097,416	+		PFR28_03548	0.35	+0.2
4,097,416	+		PFR28_03548	0.35	-2.4
4,097,416	+		PFR28_03548	0.35	+0.3
4,097,416	+		PFR28_03548	0.35	-1.0
4,097,416	+		PFR28_03548	0.35	+1.4
4,097,539	+		PFR28_03548	0.51	-0.5
4,097,593	+		PFR28_03548	0.58	-0.8
4,097,594	-		PFR28_03548	0.58	-1.3
4,097,594	-		PFR28_03548	0.58	+0.1
4,097,594	-		PFR28_03548	0.58	-0.0
4,097,594	-		PFR28_03548	0.58	+1.9
4,097,594	-		PFR28_03548	0.58	+0.8
4,097,594	-		PFR28_03548	0.58	+0.3
4,097,594	-		PFR28_03548	0.58	-1.1
4,097,596	+		PFR28_03548	0.58	-0.9
4,097,596	+		PFR28_03548	0.58	-0.8
4,097,596	+		PFR28_03548	0.58	+1.1
4,097,596	+		PFR28_03548	0.58	-0.8
4,097,597	-		PFR28_03548	0.59	-0.3
4,097,597	-		PFR28_03548	0.59	-1.6
4,097,597	-		PFR28_03548	0.59	+0.8
4,097,597	-		PFR28_03548	0.59	-0.0
4,097,637	-		PFR28_03548	0.64	+1.0
4,097,765	-		PFR28_03548	0.80	-0.8
4,097,816	-		PFR28_03548	0.87	+1.7
4,097,816	-		PFR28_03548	0.87	-1.5
4,097,974	-				+0.0
4,097,977	+				+1.8
4,097,979	+				-0.2
4,097,979	+				-0.9