Strain Fitness in Pseudomonas sp. RS175 around PFR28_03478

Experiment: Vanillic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillic Acid (C) 2.5 mM
4,010,163	+		PFR28_03477	0.62	-0.6
4,010,164	-		PFR28_03477	0.62	+1.0
4,010,164	-		PFR28_03477	0.62	-1.8
4,010,164	-		PFR28_03477	0.62	-0.6
4,010,283	+		PFR28_03477	0.67	-0.4
4,010,283	+		PFR28_03477	0.67	-0.2
4,010,283	+		PFR28_03477	0.67	-0.5
4,010,313	+		PFR28_03477	0.69	+0.8
4,010,313	+		PFR28_03477	0.69	-1.1
4,010,314	-		PFR28_03477	0.69	-0.5
4,010,314	-		PFR28_03477	0.69	-1.3
4,010,328	+		PFR28_03477	0.69	-1.5
4,010,329	-		PFR28_03477	0.69	+1.4
4,010,329	-		PFR28_03477	0.69	+0.9
4,010,369	+		PFR28_03477	0.71	+0.1
4,010,369	+		PFR28_03477	0.71	+0.1
4,010,369	+		PFR28_03477	0.71	+0.4
4,010,370	-		PFR28_03477	0.71	+4.1
4,010,370	-		PFR28_03477	0.71	+0.2
4,010,370	-		PFR28_03477	0.71	+0.3
4,010,370	-		PFR28_03477	0.71	-1.3
4,010,370	-		PFR28_03477	0.71	+0.3
4,010,370	-		PFR28_03477	0.71	+0.5
4,010,442	+		PFR28_03477	0.74	+0.5
4,010,514	+		PFR28_03477	0.77	-1.7
4,010,514	+		PFR28_03477	0.77	+0.1
4,010,514	+		PFR28_03477	0.77	-1.1
4,010,514	+		PFR28_03477	0.77	-1.7
4,010,514	+		PFR28_03477	0.77	-0.7
4,010,515	-		PFR28_03477	0.77	+0.1
4,010,515	-		PFR28_03477	0.77	+3.0
4,010,515	-		PFR28_03477	0.77	-0.7
4,010,515	-		PFR28_03477	0.77	-0.6
4,010,640	+		PFR28_03477	0.83	+1.7
4,010,640	+		PFR28_03477	0.83	+2.1
4,010,640	+		PFR28_03477	0.83	-1.2
4,010,640	+		PFR28_03477	0.83	+2.1
4,010,640	+		PFR28_03477	0.83	-2.8
4,010,641	-		PFR28_03477	0.83	-0.6
4,010,641	-		PFR28_03477	0.83	-1.7
4,010,646	+		PFR28_03477	0.83	-0.2
4,010,646	+		PFR28_03477	0.83	-0.7
4,010,646	+		PFR28_03477	0.83	-0.7
4,010,646	+		PFR28_03477	0.83	-0.4
4,010,646	+		PFR28_03477	0.83	-0.3
4,010,646	+		PFR28_03477	0.83	-0.8
4,010,646	+		PFR28_03477	0.83	+1.1
4,010,646	+		PFR28_03477	0.83	+0.3
4,010,646	+		PFR28_03477	0.83	+2.5
4,010,646	+		PFR28_03477	0.83	+1.1
4,010,646	+		PFR28_03477	0.83	-0.7
4,010,646	+		PFR28_03477	0.83	-1.7
4,010,646	+		PFR28_03477	0.83	-0.8
4,010,646	+		PFR28_03477	0.83	-0.6
4,010,647	-		PFR28_03477	0.83	-0.8
4,010,647	-		PFR28_03477	0.83	+0.1
4,010,647	-		PFR28_03477	0.83	+1.3
4,010,647	-		PFR28_03477	0.83	-1.3
4,010,647	-		PFR28_03477	0.83	-0.6
4,010,647	-		PFR28_03477	0.83	+0.9
4,010,647	-		PFR28_03477	0.83	-0.5
4,010,647	-		PFR28_03477	0.83	-2.1
4,010,647	-		PFR28_03477	0.83	-0.9
4,010,647	-		PFR28_03477	0.83	-1.1
4,010,647	-		PFR28_03477	0.83	+1.5
4,011,054	+				+0.5
4,011,055	-				-0.2
4,011,293	+		PFR28_03478	0.16	+0.3
4,011,294	-		PFR28_03478	0.16	-0.3
4,011,294	-		PFR28_03478	0.16	-0.2
4,011,311	+		PFR28_03478	0.18	+0.5
4,011,612	+		PFR28_03478	0.51	-0.8
4,011,612	+		PFR28_03478	0.51	+1.7
4,011,612	+		PFR28_03478	0.51	+1.7
4,011,612	+		PFR28_03478	0.51	+0.7
4,011,613	-		PFR28_03478	0.51	+3.1
4,011,613	-		PFR28_03478	0.51	-1.3
4,011,613	-		PFR28_03478	0.51	+0.1
4,011,613	-		PFR28_03478	0.51	-1.5
4,011,613	-		PFR28_03478	0.51	-1.2
4,011,613	-		PFR28_03478	0.51	-0.8
4,011,616	+		PFR28_03478	0.51	+0.7
4,011,616	+		PFR28_03478	0.51	+1.1
4,011,616	+		PFR28_03478	0.51	-0.5
4,011,616	+		PFR28_03478	0.51	+1.3
4,011,616	+		PFR28_03478	0.51	-1.1
4,011,617	-		PFR28_03478	0.51	+2.7
4,011,617	-		PFR28_03478	0.51	-0.1
4,011,617	-		PFR28_03478	0.51	-0.5
4,011,617	-		PFR28_03478	0.51	-0.3
4,011,617	-		PFR28_03478	0.51	+3.7
4,011,617	-		PFR28_03478	0.51	+1.1
4,011,617	-		PFR28_03478	0.51	+0.1
4,011,617	-		PFR28_03478	0.51	-0.6
4,011,634	+		PFR28_03478	0.53	+1.9
4,011,634	+		PFR28_03478	0.53	+2.7
4,011,634	+		PFR28_03478	0.53	-2.4
4,011,634	+		PFR28_03478	0.53	-1.0
4,011,635	-		PFR28_03478	0.53	+1.0
4,011,635	-		PFR28_03478	0.53	-0.5
4,011,685	+		PFR28_03478	0.59	+3.1
4,011,685	+		PFR28_03478	0.59	+1.3
4,011,685	+		PFR28_03478	0.59	+1.7
4,011,686	-		PFR28_03478	0.59	+1.1
4,011,686	-		PFR28_03478	0.59	+0.3
4,011,723	+		PFR28_03478	0.63	-1.9
4,011,723	+		PFR28_03478	0.63	-1.7
4,011,723	+		PFR28_03478	0.63	-0.3
4,011,723	+		PFR28_03478	0.63	-1.3
4,011,723	+		PFR28_03478	0.63	+0.1
4,011,723	+		PFR28_03478	0.63	-0.6
4,011,723	+		PFR28_03478	0.63	-0.6
4,011,723	+		PFR28_03478	0.63	+1.7
4,011,723	+		PFR28_03478	0.63	+0.1
4,011,723	+		PFR28_03478	0.63	+0.4
4,011,723	+		PFR28_03478	0.63	-0.3
4,011,723	+		PFR28_03478	0.63	+2.9
4,011,723	+		PFR28_03478	0.63	-1.7
4,011,723	+		PFR28_03478	0.63	-0.3
4,011,723	+		PFR28_03478	0.63	-2.3
4,011,723	+		PFR28_03478	0.63	-0.7
4,011,723	+		PFR28_03478	0.63	-1.6
4,011,723	+		PFR28_03478	0.63	-1.0
4,011,723	+		PFR28_03478	0.63	-0.9
4,011,724	-		PFR28_03478	0.63	+0.1
4,011,724	-		PFR28_03478	0.63	+0.5
4,011,724	-		PFR28_03478	0.63	+0.1
4,011,724	-		PFR28_03478	0.63	-1.3
4,011,724	-		PFR28_03478	0.63	-0.5
4,011,724	-		PFR28_03478	0.63	-1.9
4,011,724	-		PFR28_03478	0.63	-1.4
4,011,724	-		PFR28_03478	0.63	+0.6
4,011,724	-		PFR28_03478	0.63	+1.7
4,011,724	-		PFR28_03478	0.63	+1.1
4,011,724	-		PFR28_03478	0.63	+2.1
4,011,724	-		PFR28_03478	0.63	+2.1
4,011,724	-		PFR28_03478	0.63	-0.1
4,011,724	-		PFR28_03478	0.63	-1.8
4,011,724	-		PFR28_03478	0.63	-0.5
4,011,724	-		PFR28_03478	0.63	+0.8
4,011,724	-		PFR28_03478	0.63	-0.2
4,011,727	+		PFR28_03478	0.63	+0.3
4,011,728	-		PFR28_03478	0.64	-0.9
4,011,889	+		PFR28_03478	0.81	-0.2
4,011,889	+		PFR28_03478	0.81	-0.7
4,011,889	+		PFR28_03478	0.81	-0.8
4,011,889	+		PFR28_03478	0.81	-0.3
4,011,890	-		PFR28_03478	0.81	+2.4
4,011,890	-		PFR28_03478	0.81	+0.2
4,011,890	-		PFR28_03478	0.81	-0.7
4,011,904	+		PFR28_03478	0.83	+1.5
4,011,904	+		PFR28_03478	0.83	+1.2
4,011,904	+		PFR28_03478	0.83	-1.5
4,011,904	+		PFR28_03478	0.83	+2.5
4,011,905	-		PFR28_03478	0.83	-0.7
4,011,953	-		PFR28_03478	0.88	-0.1
4,011,953	-		PFR28_03478	0.88	-0.6
4,011,953	-		PFR28_03478	0.88	-1.5
4,011,953	-		PFR28_03478	0.88	-0.2
4,011,988	+				+2.1
4,011,988	+				-1.6
4,011,988	+				+0.5
4,011,989	-				+1.5
4,011,989	-				+0.5
4,011,989	-				+1.8
4,011,989	-				-0.3
4,011,989	-				-3.4
4,011,990	+				-2.0
4,011,991	-				-0.8
4,011,991	-				+1.2
4,011,991	-				-0.2
4,011,991	-				+2.5
4,012,130	+				-0.7
4,012,131	-				-1.1
4,012,163	+				+0.3
4,012,163	+				+0.3
4,012,163	+				+0.1
4,012,164	-				-1.4
4,012,202	+		PFR28_03479	0.15	+0.3
4,012,202	+		PFR28_03479	0.15	-1.2
4,012,203	-		PFR28_03479	0.15	+1.3
4,012,364	+		PFR28_03479	0.47	+1.7
4,012,364	+		PFR28_03479	0.47	-0.1
4,012,364	+		PFR28_03479	0.47	-0.4
4,012,364	+		PFR28_03479	0.47	-1.2
4,012,364	+		PFR28_03479	0.47	+0.8
4,012,364	+		PFR28_03479	0.47	+0.3
4,012,364	+		PFR28_03479	0.47	-1.5
4,012,364	+		PFR28_03479	0.47	-1.7
4,012,364	+		PFR28_03479	0.47	+0.5
4,012,364	+		PFR28_03479	0.47	-0.9
4,012,364	+		PFR28_03479	0.47	-0.3
4,012,364	+		PFR28_03479	0.47	+0.8
4,012,364	+		PFR28_03479	0.47	+0.1
4,012,364	+		PFR28_03479	0.47	+0.2
4,012,364	+		PFR28_03479	0.47	-1.4
4,012,364	+		PFR28_03479	0.47	+2.1
4,012,364	+		PFR28_03479	0.47	+1.9
4,012,364	+		PFR28_03479	0.47	+1.0
4,012,364	+		PFR28_03479	0.47	-2.6
4,012,364	+		PFR28_03479	0.47	+3.4
4,012,364	+		PFR28_03479	0.47	-1.7
4,012,364	+		PFR28_03479	0.47	-0.5
4,012,364	+		PFR28_03479	0.47	+0.5
4,012,364	+		PFR28_03479	0.47	-0.6
4,012,364	+		PFR28_03479	0.47	-2.1
4,012,364	+		PFR28_03479	0.47	+0.1
4,012,364	+		PFR28_03479	0.47	-0.3
4,012,364	+		PFR28_03479	0.47	+0.5
4,012,364	+		PFR28_03479	0.47	+1.1
4,012,364	+		PFR28_03479	0.47	-1.3
4,012,364	+		PFR28_03479	0.47	-0.7
4,012,364	+		PFR28_03479	0.47	+0.1
4,012,364	+		PFR28_03479	0.47	-0.6
4,012,364	+		PFR28_03479	0.47	-1.2
4,012,364	+		PFR28_03479	0.47	+1.6
4,012,364	+		PFR28_03479	0.47	-2.0
4,012,364	+		PFR28_03479	0.47	-0.1
4,012,365	-		PFR28_03479	0.47	+0.7
4,012,365	-		PFR28_03479	0.47	-0.0
4,012,365	-		PFR28_03479	0.47	+0.3
4,012,365	-		PFR28_03479	0.47	+0.2
4,012,365	-		PFR28_03479	0.47	+1.1
4,012,365	-		PFR28_03479	0.47	-1.8
4,012,365	-		PFR28_03479	0.47	-0.1
4,012,365	-		PFR28_03479	0.47	-0.4
4,012,365	-		PFR28_03479	0.47	-1.0
4,012,365	-		PFR28_03479	0.47	-0.4
4,012,365	-		PFR28_03479	0.47	-0.5
4,012,365	-		PFR28_03479	0.47	+1.2
4,012,365	-		PFR28_03479	0.47	-0.6
4,012,365	-		PFR28_03479	0.47	-1.4
4,012,365	-		PFR28_03479	0.47	+0.4
4,012,365	-		PFR28_03479	0.47	+1.0
4,012,365	-		PFR28_03479	0.47	+1.5
4,012,365	-		PFR28_03479	0.47	-0.6
4,012,365	-		PFR28_03479	0.47	-1.0
4,012,365	-		PFR28_03479	0.47	+0.5
4,012,365	-		PFR28_03479	0.47	+0.2
4,012,365	-		PFR28_03479	0.47	+2.7
4,012,365	-		PFR28_03479	0.47	-0.6
4,012,365	-		PFR28_03479	0.47	-0.1
4,012,365	-		PFR28_03479	0.47	+3.1
4,012,365	-		PFR28_03479	0.47	-0.2
4,012,365	-		PFR28_03479	0.47	-1.1
4,012,365	-		PFR28_03479	0.47	+0.6
4,012,365	-		PFR28_03479	0.47	-1.6
4,012,365	-		PFR28_03479	0.47	+0.3
4,012,365	-		PFR28_03479	0.47	+1.0
4,012,365	-		PFR28_03479	0.47	+1.7
4,012,365	-		PFR28_03479	0.47	-0.1
4,012,365	-		PFR28_03479	0.47	-0.7
4,012,365	-		PFR28_03479	0.47	-0.3
4,012,365	-		PFR28_03479	0.47	-0.8
4,012,365	-		PFR28_03479	0.47	-1.7
4,012,365	-		PFR28_03479	0.47	-1.5
4,012,365	-		PFR28_03479	0.47	+0.4
4,012,365	-		PFR28_03479	0.47	-0.1
4,012,365	-		PFR28_03479	0.47	-0.5
4,012,365	-		PFR28_03479	0.47	-1.5
4,012,539	+		PFR28_03479	0.82	+1.2
4,012,539	+		PFR28_03479	0.82	+4.7
4,012,540	-		PFR28_03479	0.83	-2.2
4,012,540	-		PFR28_03479	0.83	+0.3
4,012,540	-		PFR28_03479	0.83	+0.6
4,012,540	-		PFR28_03479	0.83	-0.5
4,012,562	+		PFR28_03479	0.87	-1.1
4,012,562	+		PFR28_03479	0.87	-0.3
4,012,563	-		PFR28_03479	0.87	-1.5
4,012,690	+		PFR28_03480	0.10	+0.6
4,012,690	+		PFR28_03480	0.10	+0.4
4,012,691	-		PFR28_03480	0.11	-0.2
4,012,820	+		PFR28_03480	0.31	-0.9
4,012,870	+		PFR28_03480	0.39	+0.3
4,012,870	+		PFR28_03480	0.39	-1.3
4,012,870	+		PFR28_03480	0.39	-0.4
4,012,871	-		PFR28_03480	0.39	-0.8
4,012,871	-		PFR28_03480	0.39	+1.6
4,012,871	-		PFR28_03480	0.39	-1.6
4,012,871	-		PFR28_03480	0.39	+0.1
4,012,871	-		PFR28_03480	0.39	+3.1
4,012,871	-		PFR28_03480	0.39	-0.3
4,013,014	+		PFR28_03480	0.61	+3.1
4,013,014	+		PFR28_03480	0.61	+2.6
4,013,014	+		PFR28_03480	0.61	-0.7
4,013,015	-		PFR28_03480	0.61	+1.8
4,013,015	-		PFR28_03480	0.61	-0.9
4,013,044	+		PFR28_03480	0.66	-1.4
4,013,044	+		PFR28_03480	0.66	+0.8
4,013,044	+		PFR28_03480	0.66	+0.6
4,013,044	+		PFR28_03480	0.66	-0.7
4,013,044	+		PFR28_03480	0.66	+1.2
4,013,045	-		PFR28_03480	0.66	-0.7
4,013,045	-		PFR28_03480	0.66	+3.1
4,013,045	-		PFR28_03480	0.66	+0.2
4,013,045	-		PFR28_03480	0.66	-0.1