Strain Fitness in Pseudomonas sp. RS175 around PFR28_03358

Experiment: Vanillic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillic Acid (C) 2.5 mM
3,863,695	+				-0.2
3,863,695	+				-1.9
3,863,695	+				+1.2
3,863,695	+				-0.0
3,863,695	+				-0.3
3,863,695	+				-0.1
3,863,695	+				+0.8
3,863,695	+				-0.9
3,863,696	-				+0.2
3,863,741	+				-0.4
3,863,741	+				-0.6
3,863,741	+				-1.0
3,863,741	+				+0.0
3,863,742	-				-3.1
3,863,742	-				-1.9
3,863,748	-				-0.3
3,863,779	+				-2.0
3,863,794	+				-1.6
3,863,794	+				-1.5
3,863,794	+				-0.3
3,863,794	+				+0.4
3,863,794	+				+0.4
3,863,794	+				+1.4
3,863,795	-				-1.2
3,863,821	+				-1.3
3,863,822	-				+0.4
3,863,948	+		PFR28_03357	0.26	-1.2
3,864,052	+		PFR28_03357	0.43	-0.2
3,864,052	+		PFR28_03357	0.43	-0.1
3,864,052	+		PFR28_03357	0.43	-2.0
3,864,053	-		PFR28_03357	0.43	+3.1
3,864,053	-		PFR28_03357	0.43	-0.6
3,864,053	-		PFR28_03357	0.43	+0.4
3,864,053	-		PFR28_03357	0.43	-0.3
3,864,053	-		PFR28_03357	0.43	-0.8
3,864,053	-		PFR28_03357	0.43	-1.3
3,864,053	-		PFR28_03357	0.43	-1.0
3,864,053	-		PFR28_03357	0.43	+0.5
3,864,053	-		PFR28_03357	0.43	+1.0
3,864,053	-		PFR28_03357	0.43	-0.7
3,864,053	-		PFR28_03357	0.43	-1.6
3,864,094	+		PFR28_03357	0.50	+0.1
3,864,094	+		PFR28_03357	0.50	+2.1
3,864,094	+		PFR28_03357	0.50	-1.1
3,864,095	-		PFR28_03357	0.50	-1.2
3,864,095	-		PFR28_03357	0.50	+0.1
3,864,095	-		PFR28_03357	0.50	+0.3
3,864,134	+		PFR28_03357	0.57	-1.5
3,864,134	+		PFR28_03357	0.57	-1.3
3,864,286	+		PFR28_03357	0.82	+0.9
3,864,287	-		PFR28_03357	0.82	-2.0
3,864,287	-		PFR28_03357	0.82	+3.1
3,864,287	-		PFR28_03357	0.82	-0.4
3,864,287	-		PFR28_03357	0.82	+3.1
3,864,381	+				-1.4
3,864,388	-				+0.9
3,864,398	+				+1.2
3,864,398	+				-1.2
3,864,398	+				-0.7
3,864,398	+				+0.0
3,864,398	+				+0.1
3,864,398	+				+1.9
3,864,398	+				-0.1
3,864,398	+				+1.1
3,864,398	+				-1.0
3,864,398	+				-1.0
3,864,398	+				+0.5
3,864,398	+				-0.4
3,864,398	+				+3.1
3,864,398	+				+0.5
3,864,398	+				-1.1
3,864,398	+				-0.1
3,864,398	+				+2.1
3,864,398	+				-0.7
3,864,398	+				+0.4
3,864,398	+				-0.2
3,864,399	-				-0.1
3,864,399	-				+0.6
3,864,399	-				+0.8
3,864,399	-				+0.2
3,864,399	-				-0.1
3,864,399	-				-0.7
3,864,399	-				-1.1
3,864,399	-				-1.4
3,864,399	-				-1.2
3,864,399	-				+0.4
3,864,399	-				+0.4
3,864,399	-				-0.4
3,864,399	-				+0.2
3,864,399	-				-2.9
3,864,399	-				-1.8
3,864,399	-				-1.2
3,864,399	-				-1.3
3,864,399	-				-0.2
3,864,399	-				-1.3
3,864,399	-				+1.8
3,864,399	-				+0.1
3,864,399	-				+0.3
3,864,399	-				+0.5
3,864,399	-				-0.7
3,864,399	-				-1.1
3,864,399	-				+0.5
3,864,399	-				+1.1
3,864,399	-				+1.4
3,864,399	-				-1.6
3,864,399	-				-0.7
3,864,399	-				-0.2
3,864,400	+				-0.5
3,864,400	+				-0.7
3,864,400	+				-1.8
3,864,401	-				-0.9
3,864,401	-				+0.3
3,864,401	-				-1.8
3,864,412	+				+0.1
3,864,412	+				-0.1
3,864,412	+				+2.0
3,864,412	+				-0.8
3,864,412	+				-0.5
3,864,413	-				-0.7
3,864,413	-				-0.4
3,864,413	-				-0.2
3,864,413	-				+2.5
3,864,413	-				+2.7
3,864,413	-				-1.1
3,864,415	+				-0.5
3,864,415	+				-1.4
3,864,416	-				+1.1
3,864,416	-				-1.6
3,864,416	-				+1.3
3,864,503	+				+3.1
3,864,503	+				+2.5
3,864,503	+				+0.5
3,864,503	+				-0.1
3,864,503	+				-1.5
3,864,503	+				+1.4
3,864,503	+				+0.7
3,864,503	+				+0.4
3,864,503	+				+0.4
3,864,504	-				+0.5
3,864,504	-				+0.6
3,864,504	-				-2.4
3,864,504	-				-0.9
3,864,504	-				+1.2
3,864,504	-				+0.9
3,864,504	-				-2.2
3,864,504	-				-1.4
3,864,504	-				+0.6
3,864,504	-				-2.7
3,864,504	-				+0.0
3,864,504	-				-0.1
3,864,504	-				-0.5
3,864,504	-				-3.4
3,864,504	-				-0.5
3,864,504	-				+0.2
3,864,647	+				+1.5
3,864,663	+				-0.6
3,864,664	-				-0.4
3,864,664	-				-0.7
3,864,664	-				-1.1
3,864,664	-				+0.1
3,864,687	+				-2.0
3,864,687	+				-1.3
3,864,687	+				-0.7
3,864,687	+				-2.4
3,864,687	+				-0.0
3,864,687	+				+2.4
3,864,688	-				-0.4
3,864,688	-				+0.9
3,864,688	-				-0.8
3,864,688	-				+0.5
3,864,688	-				-0.4
3,864,688	-				+1.9
3,864,688	-				+0.9
3,864,691	+				+2.0
3,864,691	+				+0.6
3,864,691	+				-0.2
3,864,691	+				+1.5
3,864,691	+				-1.1
3,864,691	+				-1.5
3,864,691	+				+0.5
3,864,691	+				+1.5
3,864,691	+				-0.5
3,864,691	+				-0.5
3,864,691	+				+0.5
3,864,691	+				+0.5
3,864,691	+				-1.6
3,864,691	+				-0.4
3,864,691	+				-0.1
3,864,691	+				+0.2
3,864,691	+				-0.1
3,864,691	+				+1.3
3,864,691	+				-0.4
3,864,691	+				+0.8
3,864,691	+				-0.3
3,864,691	+				+0.5
3,864,691	+				-0.6
3,864,691	+				-2.8
3,864,691	+				+0.0
3,864,691	+				+0.3
3,864,691	+				-1.2
3,864,691	+				+1.3
3,864,691	+				-2.4
3,864,691	+				-1.8
3,864,691	+				-1.8
3,864,691	+				+0.6
3,864,691	+				+0.6
3,864,691	+				+0.0
3,864,691	+				+0.6
3,864,692	-				+0.4
3,864,692	-				+0.6
3,864,692	-				+0.6
3,864,692	-				-0.3
3,864,692	-				+1.6
3,864,692	-				-2.0
3,864,692	-				+0.3
3,864,692	-				+3.1
3,864,692	-				-2.2
3,864,692	-				+1.1
3,864,692	-				+2.1
3,864,692	-				-1.1
3,864,692	-				-0.5
3,864,692	-				+1.5
3,864,692	-				-1.5
3,864,692	-				+0.5
3,864,692	-				-0.9
3,864,692	-				-1.1
3,864,692	-				-0.4
3,864,692	-				-0.8
3,864,692	-				+1.2
3,864,692	-				+1.5
3,864,692	-				+1.3
3,864,692	-				-1.5
3,864,692	-				+1.0
3,864,692	-				-0.6
3,864,692	-				+1.3
3,864,692	-				+1.6
3,864,692	-				+1.1
3,864,692	-				+0.5
3,864,692	-				-0.0
3,864,692	-				+0.5
3,864,692	-				-0.4
3,864,692	-				-0.2
3,864,692	-				+2.1
3,864,692	-				-0.4
3,864,692	-				+0.2
3,864,692	-				-0.2
3,864,692	-				+0.5
3,864,692	-				-0.9
3,864,692	-				-0.6
3,864,692	-				-0.7
3,864,692	-				+1.5
3,864,695	+				-0.3
3,864,695	+				+2.4
3,864,695	+				+1.1
3,864,695	+				+0.6
3,864,695	+				+1.1
3,864,695	+				+0.3
3,864,695	+				+1.8
3,864,695	+				+1.1
3,864,695	+				+1.3
3,864,695	+				-0.4
3,864,695	+				-0.9
3,864,695	+				-0.1
3,864,695	+				-0.1
3,864,695	+				-1.4
3,864,695	+				-0.4
3,864,695	+				-0.2
3,864,695	+				-0.6
3,864,695	+				-0.5
3,864,695	+				-0.2
3,864,695	+				+0.5
3,864,695	+				-1.5
3,864,695	+				-0.6
3,864,695	+				-2.2
3,864,695	+				+0.4
3,864,696	-				-1.2
3,864,696	-				+2.4
3,864,696	-				+0.9
3,864,696	-				+0.6
3,864,696	-				+0.7
3,864,696	-				-1.0
3,864,696	-				-1.6
3,864,696	-				+0.1
3,864,696	-				+0.9
3,864,696	-				+0.6
3,864,696	-				+0.3
3,864,696	-				+3.1
3,864,696	-				+0.6
3,864,696	-				+1.1
3,864,696	-				-0.6
3,864,696	-				+1.0
3,864,696	-				-0.8
3,864,696	-				+3.1
3,864,696	-				-0.1
3,864,696	-				+1.5
3,864,696	-				+2.4
3,864,746	+		PFR28_03358	0.25	-0.1
3,864,746	+		PFR28_03358	0.25	+1.0
3,864,746	+		PFR28_03358	0.25	+0.7
3,864,746	+		PFR28_03358	0.25	+1.2
3,864,746	+		PFR28_03358	0.25	+0.8
3,864,746	+		PFR28_03358	0.25	-0.5
3,864,746	+		PFR28_03358	0.25	+0.1
3,864,746	+		PFR28_03358	0.25	+0.0
3,864,746	+		PFR28_03358	0.25	-1.5
3,864,746	+		PFR28_03358	0.25	+0.1
3,864,746	+		PFR28_03358	0.25	-0.0
3,864,747	-		PFR28_03358	0.25	+1.5
3,864,747	-		PFR28_03358	0.25	-1.4
3,864,747	-		PFR28_03358	0.25	+1.0
3,864,747	-		PFR28_03358	0.25	+0.6
3,864,747	-		PFR28_03358	0.25	-0.8
3,864,747	-		PFR28_03358	0.25	+0.1
3,864,764	+		PFR28_03358	0.33	+1.5
3,864,764	+		PFR28_03358	0.33	+0.8
3,864,764	+		PFR28_03358	0.33	-1.6
3,864,764	+		PFR28_03358	0.33	+2.4
3,864,764	+		PFR28_03358	0.33	+0.0
3,864,765	-		PFR28_03358	0.33	-0.4
3,864,858	+		PFR28_03358	0.76	-1.0
3,864,859	-		PFR28_03358	0.76	+0.8
3,864,885	-		PFR28_03358	0.88	-1.3
3,864,891	+				+0.3
3,864,891	+				-0.2
3,864,899	-				+3.1
3,864,973	+				+1.8
3,865,034	-				+0.9
3,865,038	+				-1.1
3,865,038	+				-0.8
3,865,038	+				+2.1
3,865,080	+				+1.1
3,865,080	+				-0.9
3,865,080	+				-1.4
3,865,080	+				-0.5
3,865,081	-				-2.1
3,865,081	-				-1.4
3,865,081	-				-1.8
3,865,081	-				-1.6
3,865,081	-				-3.3
3,865,088	+				-1.6
3,865,088	+				+4.1
3,865,088	+				-1.2
3,865,089	-				-2.4
3,865,089	-				-2.3
3,865,089	-				+0.6
3,865,089	-				-1.6
3,865,089	-				+0.4
3,865,124	+				-2.3
3,865,124	+				+1.9
3,865,124	+				-1.2
3,865,124	+				-0.1
3,865,124	+				-1.4
3,865,124	+				-2.2
3,865,124	+				-0.8
3,865,124	+				-0.5
3,865,124	+				-0.2
3,865,125	-				-2.2
3,865,125	-				-1.1
3,865,125	-				-0.1
3,865,125	-				-1.3
3,865,125	-				-1.2
3,865,125	-				-0.7
3,865,182	+		PFR28_03359	0.15	+1.4
3,865,182	+		PFR28_03359	0.15	-1.6
3,865,182	+		PFR28_03359	0.15	+1.0
3,865,182	+		PFR28_03359	0.15	-1.5
3,865,182	+		PFR28_03359	0.15	-0.2
3,865,182	+		PFR28_03359	0.15	-1.2
3,865,182	+		PFR28_03359	0.15	-0.1
3,865,183	-		PFR28_03359	0.15	-0.3
3,865,183	-		PFR28_03359	0.15	-1.2
3,865,183	-		PFR28_03359	0.15	-1.5
3,865,183	-		PFR28_03359	0.15	-1.5
3,865,183	-		PFR28_03359	0.15	-0.5
3,865,183	-		PFR28_03359	0.15	-1.8
3,865,183	-		PFR28_03359	0.15	-0.9
3,865,203	+		PFR28_03359	0.20	-2.4
3,865,203	+		PFR28_03359	0.20	+0.2
3,865,203	+		PFR28_03359	0.20	-1.2
3,865,203	+		PFR28_03359	0.20	+0.5
3,865,203	+		PFR28_03359	0.20	-1.7
3,865,203	+		PFR28_03359	0.20	-1.9
3,865,204	-		PFR28_03359	0.20	-2.3
3,865,204	-		PFR28_03359	0.20	-0.4
3,865,204	-		PFR28_03359	0.20	-1.2
3,865,204	-		PFR28_03359	0.20	-2.1
3,865,204	-		PFR28_03359	0.20	+0.4
3,865,204	-		PFR28_03359	0.20	-2.1
3,865,204	-		PFR28_03359	0.20	-1.4
3,865,204	-		PFR28_03359	0.20	-1.6
3,865,242	+		PFR28_03359	0.28	+0.1
3,865,242	+		PFR28_03359	0.28	+0.4
3,865,242	+		PFR28_03359	0.28	-0.5
3,865,242	+		PFR28_03359	0.28	+0.3
3,865,242	+		PFR28_03359	0.28	-1.2
3,865,243	-		PFR28_03359	0.28	-3.0
3,865,499	+		PFR28_03359	0.82	-0.3
3,865,554	+				+1.1
3,865,554	+				-0.5
3,865,555	-				+0.6
3,865,555	-				-2.5
3,865,555	-				-0.6
3,865,555	-				-3.1
3,865,581	+				+1.4
3,865,581	+				-0.7
3,865,715	-				+3.1