Strain Fitness in Pseudomonas sp. RS175 around PFR28_02650

Experiment: Vanillic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillic Acid (C) 2.5 mM
3,130,887	+		PFR28_02649	0.29	-0.0
3,130,887	+		PFR28_02649	0.29	+0.3
3,130,887	+		PFR28_02649	0.29	+0.3
3,130,888	-		PFR28_02649	0.29	+0.1
3,131,001	+		PFR28_02649	0.43	+0.3
3,131,001	+		PFR28_02649	0.43	-0.9
3,131,001	+		PFR28_02649	0.43	-0.4
3,131,001	+		PFR28_02649	0.43	-0.6
3,131,001	+		PFR28_02649	0.43	-1.6
3,131,001	+		PFR28_02649	0.43	-0.7
3,131,001	+		PFR28_02649	0.43	-1.2
3,131,001	+		PFR28_02649	0.43	-0.2
3,131,001	+		PFR28_02649	0.43	+0.2
3,131,002	-		PFR28_02649	0.43	+2.2
3,131,002	-		PFR28_02649	0.43	+1.1
3,131,002	-		PFR28_02649	0.43	+0.6
3,131,002	-		PFR28_02649	0.43	-0.5
3,131,002	-		PFR28_02649	0.43	+0.2
3,131,002	-		PFR28_02649	0.43	-0.6
3,131,002	-		PFR28_02649	0.43	-0.8
3,131,002	-		PFR28_02649	0.43	-0.9
3,131,002	-		PFR28_02649	0.43	+0.9
3,131,002	-		PFR28_02649	0.43	+1.1
3,131,002	-		PFR28_02649	0.43	-0.3
3,131,002	-		PFR28_02649	0.43	-2.1
3,131,002	-		PFR28_02649	0.43	-2.0
3,131,002	-		PFR28_02649	0.43	-2.2
3,131,002	-		PFR28_02649	0.43	-0.8
3,131,002	-		PFR28_02649	0.43	-0.4
3,131,002	-		PFR28_02649	0.43	-0.7
3,131,002	-		PFR28_02649	0.43	-2.6
3,131,003	+		PFR28_02649	0.43	-0.4
3,131,003	+		PFR28_02649	0.43	+0.8
3,131,003	+		PFR28_02649	0.43	-1.1
3,131,003	+		PFR28_02649	0.43	+1.7
3,131,003	+		PFR28_02649	0.43	-1.2
3,131,003	+		PFR28_02649	0.43	+0.1
3,131,003	+		PFR28_02649	0.43	+0.1
3,131,004	-		PFR28_02649	0.44	-0.9
3,131,004	-		PFR28_02649	0.44	-0.3
3,131,004	-		PFR28_02649	0.44	-1.5
3,131,004	-		PFR28_02649	0.44	+1.1
3,131,004	-		PFR28_02649	0.44	-0.9
3,131,157	+		PFR28_02649	0.62	-1.4
3,131,158	-		PFR28_02649	0.62	-2.7
3,131,250	+		PFR28_02649	0.73	-0.6
3,131,250	+		PFR28_02649	0.73	-0.1
3,131,250	+		PFR28_02649	0.73	+0.3
3,131,250	+		PFR28_02649	0.73	-2.3
3,131,250	+		PFR28_02649	0.73	-1.4
3,131,251	-		PFR28_02649	0.74	-1.4
3,131,251	-		PFR28_02649	0.74	+1.9
3,131,251	-		PFR28_02649	0.74	+1.0
3,131,251	-		PFR28_02649	0.74	-0.8
3,131,427	+				+0.1
3,131,427	+				-0.4
3,131,428	-				-0.2
3,131,428	-				-0.9
3,131,430	+				+0.1
3,131,430	+				+0.3
3,131,430	+				+1.0
3,131,430	+				+1.5
3,131,430	+				+0.5
3,131,430	+				+0.9
3,131,431	-				+0.9
3,131,431	-				-0.9
3,131,431	-				-1.4
3,131,431	-				-1.1
3,131,431	-				-1.2
3,131,489	+				+1.4
3,131,489	+				-1.5
3,131,489	+				+1.3
3,131,489	+				+0.8
3,131,489	+				-0.7
3,131,490	-				+1.3
3,131,532	+				+1.0
3,131,532	+				-0.4
3,131,532	+				-0.8
3,131,533	-				-0.9
3,131,533	-				-2.5
3,131,542	+				+0.7
3,131,686	+				+1.1
3,131,687	-				+0.6
3,131,687	-				-0.1
3,131,687	-				-0.6
3,131,687	-				-0.7
3,131,687	-				+1.4
3,131,719	+				-1.0
3,131,719	+				+0.3
3,131,719	+				+1.4
3,131,719	+				+1.4
3,131,720	-				+0.3
3,132,015	-		PFR28_02650	0.10	-1.7
3,132,015	-		PFR28_02650	0.10	-1.5
3,132,015	-		PFR28_02650	0.10	+0.6
3,132,290	+		PFR28_02650	0.20	+0.1
3,132,290	+		PFR28_02650	0.20	-1.0
3,132,290	+		PFR28_02650	0.20	+0.6
3,132,290	+		PFR28_02650	0.20	+0.6
3,132,290	+		PFR28_02650	0.20	-0.8
3,132,290	+		PFR28_02650	0.20	+3.3
3,132,291	-		PFR28_02650	0.20	-0.9
3,132,291	-		PFR28_02650	0.20	+0.2
3,132,291	-		PFR28_02650	0.20	+1.3
3,132,291	-		PFR28_02650	0.20	-2.5
3,132,508	+		PFR28_02650	0.28	-1.7
3,132,508	+		PFR28_02650	0.28	+1.0
3,132,551	+		PFR28_02650	0.29	+0.9
3,132,551	+		PFR28_02650	0.29	-0.2
3,132,551	+		PFR28_02650	0.29	-1.3
3,132,551	+		PFR28_02650	0.29	+0.1
3,132,551	+		PFR28_02650	0.29	+0.4
3,132,551	+		PFR28_02650	0.29	+0.8
3,132,551	+		PFR28_02650	0.29	-0.5
3,132,552	-		PFR28_02650	0.29	+0.3
3,132,552	-		PFR28_02650	0.29	-0.0
3,132,552	-		PFR28_02650	0.29	-0.7
3,132,552	-		PFR28_02650	0.29	+1.4
3,132,552	-		PFR28_02650	0.29	-0.8
3,132,552	-		PFR28_02650	0.29	-0.0
3,132,552	-		PFR28_02650	0.29	-0.3
3,132,552	-		PFR28_02650	0.29	-2.3
3,132,552	-		PFR28_02650	0.29	-1.0
3,132,624	-		PFR28_02650	0.32	-0.9
3,133,109	+		PFR28_02650	0.49	+2.7
3,133,109	+		PFR28_02650	0.49	+0.1
3,133,109	+		PFR28_02650	0.49	-1.6
3,133,110	-		PFR28_02650	0.49	+0.7
3,133,110	-		PFR28_02650	0.49	+0.1
3,133,110	-		PFR28_02650	0.49	-1.9
3,133,110	-		PFR28_02650	0.49	+0.6
3,133,245	-		PFR28_02650	0.54	-0.1
3,133,254	-		PFR28_02650	0.54	+0.9
3,133,385	+		PFR28_02650	0.59	-2.1
3,133,385	+		PFR28_02650	0.59	-1.9
3,133,385	+		PFR28_02650	0.59	-1.4
3,133,385	+		PFR28_02650	0.59	+2.1
3,133,386	-		PFR28_02650	0.59	+1.2
3,133,386	-		PFR28_02650	0.59	-1.6
3,133,672	+		PFR28_02650	0.69	-0.2
3,133,672	+		PFR28_02650	0.69	+1.7
3,133,823	+		PFR28_02650	0.74	+0.8
3,133,823	+		PFR28_02650	0.74	+0.2
3,133,824	-		PFR28_02650	0.75	-1.3
3,133,824	-		PFR28_02650	0.75	+0.9
3,133,824	-		PFR28_02650	0.75	-1.5
3,133,824	-		PFR28_02650	0.75	+0.1
3,133,824	-		PFR28_02650	0.75	-1.4
3,133,958	+		PFR28_02650	0.79	-0.8
3,133,958	+		PFR28_02650	0.79	-2.9
3,133,959	-		PFR28_02650	0.79	-0.4
3,133,994	+		PFR28_02650	0.81	+0.6
3,133,994	+		PFR28_02650	0.81	+1.6
3,133,994	+		PFR28_02650	0.81	-0.7
3,133,994	+		PFR28_02650	0.81	+2.3
3,133,995	-		PFR28_02650	0.81	+1.5
3,133,995	-		PFR28_02650	0.81	-1.0
3,134,188	-		PFR28_02650	0.87	-2.7
3,134,188	-		PFR28_02650	0.87	+0.1
3,134,188	-		PFR28_02650	0.87	-0.5
3,134,188	-		PFR28_02650	0.87	-0.9
3,134,313	+				+0.4
3,134,313	+				+0.4
3,134,314	-				-0.6
3,134,314	-				-0.6
3,134,451	-				+1.9
3,134,487	+				-1.2
3,134,487	+				-0.1
3,134,487	+				+2.9
3,134,488	-				-0.3
3,134,488	-				-1.6
3,134,488	-				+1.1
3,134,569	-				+0.6
3,134,581	-				-0.5
3,134,622	+				-0.9
3,134,622	+				-0.0
3,134,623	-				-2.1
3,134,717	+		PFR28_02651	0.16	+2.5
3,134,949	-		PFR28_02651	0.32	-0.6
3,134,957	+		PFR28_02651	0.32	+2.3
3,134,958	-		PFR28_02651	0.32	-0.1
3,135,116	+		PFR28_02651	0.43	+2.0
3,135,117	-		PFR28_02651	0.43	+1.1
3,135,377	+		PFR28_02651	0.61	-1.9
3,135,378	-		PFR28_02651	0.61	-0.7
3,135,524	+		PFR28_02651	0.71	-0.8
3,135,524	+		PFR28_02651	0.71	+0.6
3,135,524	+		PFR28_02651	0.71	+0.1
3,135,525	-		PFR28_02651	0.71	+1.0
3,135,525	-		PFR28_02651	0.71	+0.6