Experiment: Vanillic Acid (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00129 and PFR28_00130 are separated by 171 nucleotides PFR28_00130 and PFR28_00131 are separated by 316 nucleotides
PFR28_00129: PFR28_00129 - Porin D, at 150,005 to 151,420
_00129
PFR28_00130: PFR28_00130 - Periplasmic dipeptide transport protein, at 151,592 to 153,193
_00130
PFR28_00131: PFR28_00131 - Periplasmic dipeptide transport protein, at 153,510 to 155,135
_00131
Position (kb) 151
152
153
154 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 150.594 kb on + strand, within PFR28_00129 at 150.594 kb on + strand, within PFR28_00129 at 150.594 kb on + strand, within PFR28_00129 at 150.594 kb on + strand, within PFR28_00129 at 150.594 kb on + strand, within PFR28_00129 at 150.594 kb on + strand, within PFR28_00129 at 150.594 kb on + strand, within PFR28_00129 at 150.594 kb on + strand, within PFR28_00129 at 150.594 kb on + strand, within PFR28_00129 at 150.595 kb on - strand, within PFR28_00129 at 150.595 kb on - strand, within PFR28_00129 at 150.595 kb on - strand, within PFR28_00129 at 150.597 kb on + strand, within PFR28_00129 at 150.597 kb on + strand, within PFR28_00129 at 150.598 kb on - strand, within PFR28_00129 at 150.663 kb on + strand, within PFR28_00129 at 150.663 kb on + strand, within PFR28_00129 at 150.664 kb on - strand, within PFR28_00129 at 150.748 kb on + strand, within PFR28_00129 at 150.748 kb on + strand, within PFR28_00129 at 150.749 kb on - strand, within PFR28_00129 at 150.988 kb on + strand, within PFR28_00129 at 150.988 kb on + strand, within PFR28_00129 at 151.080 kb on + strand, within PFR28_00129 at 151.080 kb on + strand, within PFR28_00129 at 151.081 kb on - strand, within PFR28_00129 at 151.111 kb on + strand, within PFR28_00129 at 151.111 kb on + strand, within PFR28_00129 at 151.112 kb on - strand, within PFR28_00129 at 151.112 kb on - strand, within PFR28_00129 at 151.134 kb on + strand, within PFR28_00129 at 151.134 kb on + strand, within PFR28_00129 at 151.134 kb on + strand, within PFR28_00129 at 151.134 kb on + strand, within PFR28_00129 at 151.134 kb on + strand, within PFR28_00129 at 151.135 kb on - strand, within PFR28_00129 at 151.135 kb on - strand, within PFR28_00129 at 151.154 kb on + strand, within PFR28_00129 at 151.154 kb on + strand, within PFR28_00129 at 151.204 kb on - strand, within PFR28_00129 at 151.242 kb on + strand, within PFR28_00129 at 151.242 kb on + strand, within PFR28_00129 at 151.249 kb on + strand, within PFR28_00129 at 151.249 kb on + strand, within PFR28_00129 at 151.249 kb on + strand, within PFR28_00129 at 151.359 kb on + strand at 151.360 kb on - strand at 151.444 kb on + strand at 151.445 kb on - strand at 151.484 kb on + strand at 151.484 kb on + strand at 151.484 kb on + strand at 151.485 kb on - strand at 151.744 kb on - strand at 151.804 kb on - strand, within PFR28_00130 at 151.827 kb on + strand, within PFR28_00130 at 151.827 kb on + strand, within PFR28_00130 at 151.827 kb on + strand, within PFR28_00130 at 151.827 kb on + strand, within PFR28_00130 at 151.827 kb on + strand, within PFR28_00130 at 151.827 kb on + strand, within PFR28_00130 at 151.828 kb on - strand, within PFR28_00130 at 151.828 kb on - strand, within PFR28_00130 at 151.828 kb on - strand, within PFR28_00130 at 151.828 kb on - strand, within PFR28_00130 at 151.828 kb on - strand, within PFR28_00130 at 151.828 kb on - strand, within PFR28_00130 at 151.828 kb on - strand, within PFR28_00130 at 151.857 kb on + strand, within PFR28_00130 at 151.857 kb on + strand, within PFR28_00130 at 151.857 kb on + strand, within PFR28_00130 at 151.857 kb on + strand, within PFR28_00130 at 151.857 kb on + strand, within PFR28_00130 at 151.857 kb on + strand, within PFR28_00130 at 151.857 kb on + strand, within PFR28_00130 at 151.857 kb on + strand, within PFR28_00130 at 151.858 kb on - strand, within PFR28_00130 at 151.858 kb on - strand, within PFR28_00130 at 151.858 kb on - strand, within PFR28_00130 at 151.858 kb on - strand, within PFR28_00130 at 151.950 kb on + strand, within PFR28_00130 at 151.950 kb on + strand, within PFR28_00130 at 151.951 kb on - strand, within PFR28_00130 at 151.951 kb on - strand, within PFR28_00130 at 151.951 kb on - strand, within PFR28_00130 at 151.951 kb on - strand, within PFR28_00130 at 151.965 kb on + strand, within PFR28_00130 at 151.965 kb on + strand, within PFR28_00130 at 151.966 kb on - strand, within PFR28_00130 at 152.046 kb on + strand, within PFR28_00130 at 152.047 kb on - strand, within PFR28_00130 at 152.139 kb on + strand, within PFR28_00130 at 152.139 kb on + strand, within PFR28_00130 at 152.166 kb on + strand, within PFR28_00130 at 152.220 kb on + strand, within PFR28_00130 at 152.221 kb on - strand, within PFR28_00130 at 152.273 kb on + strand, within PFR28_00130 at 152.310 kb on + strand, within PFR28_00130 at 152.310 kb on + strand, within PFR28_00130 at 152.310 kb on + strand, within PFR28_00130 at 152.311 kb on - strand, within PFR28_00130 at 152.311 kb on - strand, within PFR28_00130 at 152.317 kb on + strand, within PFR28_00130 at 152.319 kb on + strand, within PFR28_00130 at 152.319 kb on + strand, within PFR28_00130 at 152.319 kb on + strand, within PFR28_00130 at 152.319 kb on + strand, within PFR28_00130 at 152.319 kb on + strand, within PFR28_00130 at 152.320 kb on - strand, within PFR28_00130 at 152.320 kb on - strand, within PFR28_00130 at 152.320 kb on - strand, within PFR28_00130 at 152.320 kb on - strand, within PFR28_00130 at 152.320 kb on - strand, within PFR28_00130 at 152.320 kb on - strand, within PFR28_00130 at 152.508 kb on + strand, within PFR28_00130 at 152.526 kb on + strand, within PFR28_00130 at 152.527 kb on - strand, within PFR28_00130 at 152.551 kb on - strand, within PFR28_00130 at 152.634 kb on + strand, within PFR28_00130 at 152.887 kb on - strand, within PFR28_00130 at 152.887 kb on - strand, within PFR28_00130 at 152.931 kb on + strand, within PFR28_00130 at 152.931 kb on + strand, within PFR28_00130 at 152.931 kb on + strand, within PFR28_00130 at 152.931 kb on + strand, within PFR28_00130 at 153.021 kb on + strand, within PFR28_00130 at 153.021 kb on + strand, within PFR28_00130 at 153.022 kb on - strand, within PFR28_00130 at 153.022 kb on - strand, within PFR28_00130 at 153.060 kb on + strand at 153.060 kb on + strand at 153.060 kb on + strand at 153.060 kb on + strand at 153.060 kb on + strand at 153.060 kb on + strand at 153.060 kb on + strand at 153.061 kb on - strand at 153.061 kb on - strand at 153.061 kb on - strand at 153.322 kb on + strand at 153.322 kb on + strand at 153.323 kb on - strand at 153.323 kb on - strand at 153.323 kb on - strand at 153.323 kb on - strand at 153.344 kb on - strand at 153.344 kb on - strand at 153.369 kb on + strand at 153.369 kb on + strand at 153.369 kb on + strand at 153.369 kb on + strand at 153.369 kb on + strand at 153.369 kb on + strand at 153.369 kb on + strand at 153.370 kb on - strand at 153.370 kb on - strand at 153.370 kb on - strand at 153.370 kb on - strand at 153.382 kb on + strand at 153.443 kb on + strand at 153.444 kb on - strand at 153.444 kb on - strand at 153.469 kb on + strand at 153.470 kb on - strand at 153.506 kb on + strand at 153.506 kb on + strand at 153.506 kb on + strand at 153.506 kb on + strand at 153.507 kb on - strand at 153.507 kb on - strand at 153.507 kb on - strand at 153.507 kb on - strand at 153.507 kb on - strand at 153.507 kb on - strand at 153.511 kb on + strand at 153.511 kb on + strand at 153.511 kb on + strand at 153.511 kb on + strand at 153.511 kb on + strand at 153.511 kb on + strand at 153.511 kb on + strand at 153.511 kb on + strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.512 kb on - strand at 153.532 kb on + strand at 153.532 kb on + strand at 153.533 kb on - strand at 153.533 kb on - strand at 153.533 kb on - strand at 153.533 kb on - strand at 153.614 kb on + strand at 153.614 kb on + strand at 153.615 kb on - strand at 153.615 kb on - strand at 153.615 kb on - strand at 153.615 kb on - strand at 153.661 kb on + strand at 153.661 kb on + strand at 153.661 kb on + strand at 153.662 kb on - strand at 153.662 kb on - strand at 153.662 kb on - strand at 153.662 kb on - strand at 153.868 kb on + strand, within PFR28_00131 at 153.869 kb on - strand, within PFR28_00131 at 153.869 kb on - strand, within PFR28_00131 at 153.869 kb on - strand, within PFR28_00131 at 153.883 kb on + strand, within PFR28_00131 at 153.883 kb on + strand, within PFR28_00131 at 153.884 kb on - strand, within PFR28_00131 at 153.884 kb on - strand, within PFR28_00131 at 153.964 kb on + strand, within PFR28_00131 at 153.965 kb on - strand, within PFR28_00131 at 153.965 kb on - strand, within PFR28_00131 at 154.057 kb on + strand, within PFR28_00131 at 154.058 kb on - strand, within PFR28_00131 at 154.058 kb on - strand, within PFR28_00131 at 154.084 kb on + strand, within PFR28_00131 at 154.139 kb on - strand, within PFR28_00131
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillic Acid (C) 2.5 mM remove 150,594 + PFR28_00129 0.42 -1.3 150,594 + PFR28_00129 0.42 +1.7 150,594 + PFR28_00129 0.42 -0.6 150,594 + PFR28_00129 0.42 +0.9 150,594 + PFR28_00129 0.42 +0.2 150,594 + PFR28_00129 0.42 +0.2 150,594 + PFR28_00129 0.42 +0.5 150,594 + PFR28_00129 0.42 -0.7 150,594 + PFR28_00129 0.42 +0.2 150,595 - PFR28_00129 0.42 +1.9 150,595 - PFR28_00129 0.42 +2.6 150,595 - PFR28_00129 0.42 +3.5 150,597 + PFR28_00129 0.42 +0.7 150,597 + PFR28_00129 0.42 +0.8 150,598 - PFR28_00129 0.42 +1.6 150,663 + PFR28_00129 0.46 +1.0 150,663 + PFR28_00129 0.46 -0.4 150,664 - PFR28_00129 0.47 +1.0 150,748 + PFR28_00129 0.52 +0.7 150,748 + PFR28_00129 0.52 +1.3 150,749 - PFR28_00129 0.53 +0.9 150,988 + PFR28_00129 0.69 +0.2 150,988 + PFR28_00129 0.69 -0.9 151,080 + PFR28_00129 0.76 +3.2 151,080 + PFR28_00129 0.76 +1.6 151,081 - PFR28_00129 0.76 -1.7 151,111 + PFR28_00129 0.78 +0.9 151,111 + PFR28_00129 0.78 +1.0 151,112 - PFR28_00129 0.78 +2.9 151,112 - PFR28_00129 0.78 +1.0 151,134 + PFR28_00129 0.80 -0.7 151,134 + PFR28_00129 0.80 +1.1 151,134 + PFR28_00129 0.80 +0.2 151,134 + PFR28_00129 0.80 +0.5 151,134 + PFR28_00129 0.80 -0.1 151,135 - PFR28_00129 0.80 +1.8 151,135 - PFR28_00129 0.80 +0.2 151,154 + PFR28_00129 0.81 +1.2 151,154 + PFR28_00129 0.81 -0.4 151,204 - PFR28_00129 0.85 -1.4 151,242 + PFR28_00129 0.87 -0.6 151,242 + PFR28_00129 0.87 -1.4 151,249 + PFR28_00129 0.88 -0.3 151,249 + PFR28_00129 0.88 +0.5 151,249 + PFR28_00129 0.88 +0.4 151,359 + +0.9 151,360 - +1.4 151,444 + -0.7 151,445 - -1.0 151,484 + -0.5 151,484 + +1.4 151,484 + +1.2 151,485 - +1.2 151,744 - -0.5 151,804 - PFR28_00130 0.13 -1.8 151,827 + PFR28_00130 0.15 +0.5 151,827 + PFR28_00130 0.15 +1.3 151,827 + PFR28_00130 0.15 +2.2 151,827 + PFR28_00130 0.15 -1.0 151,827 + PFR28_00130 0.15 -0.4 151,827 + PFR28_00130 0.15 +0.6 151,828 - PFR28_00130 0.15 -0.1 151,828 - PFR28_00130 0.15 -3.1 151,828 - PFR28_00130 0.15 -1.7 151,828 - PFR28_00130 0.15 +1.6 151,828 - PFR28_00130 0.15 -2.3 151,828 - PFR28_00130 0.15 -1.6 151,828 - PFR28_00130 0.15 -1.0 151,857 + PFR28_00130 0.17 +1.3 151,857 + PFR28_00130 0.17 -0.6 151,857 + PFR28_00130 0.17 -0.2 151,857 + PFR28_00130 0.17 -1.1 151,857 + PFR28_00130 0.17 -0.5 151,857 + PFR28_00130 0.17 +1.9 151,857 + PFR28_00130 0.17 +1.3 151,857 + PFR28_00130 0.17 -0.2 151,858 - PFR28_00130 0.17 -0.5 151,858 - PFR28_00130 0.17 -1.8 151,858 - PFR28_00130 0.17 +0.0 151,858 - PFR28_00130 0.17 +0.4 151,950 + PFR28_00130 0.22 +0.0 151,950 + PFR28_00130 0.22 -1.0 151,951 - PFR28_00130 0.22 -1.3 151,951 - PFR28_00130 0.22 -0.9 151,951 - PFR28_00130 0.22 +0.0 151,951 - PFR28_00130 0.22 -2.5 151,965 + PFR28_00130 0.23 +0.4 151,965 + PFR28_00130 0.23 -0.3 151,966 - PFR28_00130 0.23 -1.5 152,046 + PFR28_00130 0.28 -3.7 152,047 - PFR28_00130 0.28 -0.5 152,139 + PFR28_00130 0.34 +1.4 152,139 + PFR28_00130 0.34 +1.8 152,166 + PFR28_00130 0.36 +0.0 152,220 + PFR28_00130 0.39 +2.0 152,221 - PFR28_00130 0.39 -0.0 152,273 + PFR28_00130 0.43 -0.2 152,310 + PFR28_00130 0.45 +0.9 152,310 + PFR28_00130 0.45 +0.6 152,310 + PFR28_00130 0.45 +2.2 152,311 - PFR28_00130 0.45 -0.7 152,311 - PFR28_00130 0.45 -0.0 152,317 + PFR28_00130 0.45 +0.4 152,319 + PFR28_00130 0.45 +0.1 152,319 + PFR28_00130 0.45 -0.2 152,319 + PFR28_00130 0.45 +2.3 152,319 + PFR28_00130 0.45 +0.5 152,319 + PFR28_00130 0.45 -0.7 152,320 - PFR28_00130 0.45 +0.0 152,320 - PFR28_00130 0.45 +0.6 152,320 - PFR28_00130 0.45 +0.7 152,320 - PFR28_00130 0.45 -2.6 152,320 - PFR28_00130 0.45 -2.0 152,320 - PFR28_00130 0.45 +1.3 152,508 + PFR28_00130 0.57 +1.8 152,526 + PFR28_00130 0.58 +1.2 152,527 - PFR28_00130 0.58 +1.4 152,551 - PFR28_00130 0.60 -0.5 152,634 + PFR28_00130 0.65 +1.5 152,887 - PFR28_00130 0.81 +0.9 152,887 - PFR28_00130 0.81 +1.1 152,931 + PFR28_00130 0.84 +0.6 152,931 + PFR28_00130 0.84 +0.5 152,931 + PFR28_00130 0.84 -0.1 152,931 + PFR28_00130 0.84 +0.5 153,021 + PFR28_00130 0.89 +0.3 153,021 + PFR28_00130 0.89 +0.4 153,022 - PFR28_00130 0.89 +0.6 153,022 - PFR28_00130 0.89 +1.5 153,060 + +0.0 153,060 + +0.9 153,060 + +0.6 153,060 + -0.6 153,060 + -0.7 153,060 + +1.1 153,060 + -0.5 153,061 - +0.8 153,061 - -0.7 153,061 - +0.0 153,322 + -0.3 153,322 + -1.8 153,323 - +0.6 153,323 - -0.5 153,323 - -1.3 153,323 - -2.4 153,344 - -1.0 153,344 - -1.9 153,369 + -0.1 153,369 + +1.1 153,369 + -0.0 153,369 + +2.0 153,369 + +0.4 153,369 + +0.1 153,369 + -1.5 153,370 - -1.3 153,370 - -1.8 153,370 - -1.7 153,370 - -0.4 153,382 + -0.1 153,443 + -0.9 153,444 - -2.9 153,444 - -0.6 153,469 + +0.9 153,470 - +3.2 153,506 + -1.2 153,506 + +0.3 153,506 + -0.0 153,506 + -1.6 153,507 - -3.7 153,507 - -1.0 153,507 - -1.6 153,507 - -0.1 153,507 - -2.0 153,507 - -1.1 153,511 + +1.4 153,511 + -0.4 153,511 + -1.2 153,511 + +0.2 153,511 + +1.4 153,511 + +0.6 153,511 + +0.4 153,511 + +0.0 153,512 - -0.5 153,512 - -1.6 153,512 - -1.1 153,512 - -2.8 153,512 - -2.2 153,512 - -0.2 153,512 - -0.7 153,512 - -0.5 153,512 - +0.4 153,512 - -1.9 153,512 - -2.2 153,512 - -2.1 153,512 - -1.7 153,512 - -1.7 153,512 - -0.4 153,512 - -2.6 153,512 - -1.4 153,512 - -4.4 153,512 - -1.4 153,532 + +0.9 153,532 + +1.5 153,533 - -1.7 153,533 - -1.6 153,533 - -1.8 153,533 - -0.0 153,614 + +0.0 153,614 + +1.3 153,615 - -1.3 153,615 - -0.3 153,615 - -0.8 153,615 - -0.8 153,661 + -0.7 153,661 + -0.1 153,661 + -1.0 153,662 - +0.3 153,662 - -0.0 153,662 - -1.0 153,662 - +2.0 153,868 + PFR28_00131 0.22 +1.4 153,869 - PFR28_00131 0.22 -0.9 153,869 - PFR28_00131 0.22 +2.2 153,869 - PFR28_00131 0.22 -0.2 153,883 + PFR28_00131 0.23 +0.6 153,883 + PFR28_00131 0.23 -1.0 153,884 - PFR28_00131 0.23 +3.2 153,884 - PFR28_00131 0.23 +1.4 153,964 + PFR28_00131 0.28 -0.6 153,965 - PFR28_00131 0.28 +0.6 153,965 - PFR28_00131 0.28 -0.7 154,057 + PFR28_00131 0.34 +1.9 154,058 - PFR28_00131 0.34 -0.1 154,058 - PFR28_00131 0.34 -2.1 154,084 + PFR28_00131 0.35 +0.9 154,139 - PFR28_00131 0.39 +1.7
Or see this region's nucleotide sequence