Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_934

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_933 and PfGW456L13_934 are separated by 305 nucleotidesPfGW456L13_934 and PfGW456L13_935 are separated by 145 nucleotides PfGW456L13_933 - FIG00956490: hypothetical protein, at 1,045,790 to 1,046,431 _933 PfGW456L13_934 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,046,737 to 1,047,702 _934 PfGW456L13_935 - Penicillin acylase II (EC 3.5.1.11), at 1,047,848 to 1,050,247 _935 Position (kb) 1046 1047 1048Strain fitness (log2 ratio) -2 -1 0 1at 1045.810 kb on + strandat 1045.810 kb on + strandat 1045.810 kb on + strandat 1046.011 kb on - strand, within PfGW456L13_933at 1046.011 kb on - strand, within PfGW456L13_933at 1046.149 kb on - strand, within PfGW456L13_933at 1046.256 kb on + strand, within PfGW456L13_933at 1046.256 kb on + strand, within PfGW456L13_933at 1046.256 kb on + strand, within PfGW456L13_933at 1046.256 kb on + strand, within PfGW456L13_933at 1046.257 kb on - strand, within PfGW456L13_933at 1046.257 kb on - strand, within PfGW456L13_933at 1046.257 kb on - strand, within PfGW456L13_933at 1046.274 kb on + strand, within PfGW456L13_933at 1046.274 kb on + strand, within PfGW456L13_933at 1046.275 kb on - strand, within PfGW456L13_933at 1046.275 kb on - strand, within PfGW456L13_933at 1046.275 kb on - strand, within PfGW456L13_933at 1046.338 kb on - strand, within PfGW456L13_933at 1046.338 kb on - strand, within PfGW456L13_933at 1046.368 kb on - strandat 1046.368 kb on - strandat 1046.368 kb on - strandat 1046.368 kb on - strandat 1046.368 kb on - strandat 1046.543 kb on - strandat 1046.598 kb on + strandat 1046.598 kb on + strandat 1046.599 kb on - strandat 1046.599 kb on - strandat 1046.692 kb on + strandat 1046.947 kb on + strand, within PfGW456L13_934at 1046.948 kb on - strand, within PfGW456L13_934at 1046.948 kb on - strand, within PfGW456L13_934at 1046.948 kb on - strand, within PfGW456L13_934at 1047.117 kb on + strand, within PfGW456L13_934at 1047.118 kb on - strand, within PfGW456L13_934at 1047.118 kb on - strand, within PfGW456L13_934at 1047.187 kb on + strand, within PfGW456L13_934at 1047.187 kb on + strand, within PfGW456L13_934at 1047.187 kb on + strand, within PfGW456L13_934at 1047.187 kb on + strand, within PfGW456L13_934at 1047.187 kb on + strand, within PfGW456L13_934at 1047.187 kb on + strand, within PfGW456L13_934at 1047.187 kb on + strand, within PfGW456L13_934at 1047.187 kb on + strand, within PfGW456L13_934at 1047.187 kb on + strand, within PfGW456L13_934at 1047.188 kb on - strand, within PfGW456L13_934at 1047.188 kb on - strand, within PfGW456L13_934at 1047.188 kb on - strand, within PfGW456L13_934at 1047.188 kb on - strand, within PfGW456L13_934at 1047.188 kb on - strand, within PfGW456L13_934at 1047.188 kb on - strand, within PfGW456L13_934at 1047.188 kb on - strand, within PfGW456L13_934at 1047.188 kb on - strand, within PfGW456L13_934at 1047.188 kb on - strand, within PfGW456L13_934at 1047.250 kb on + strand, within PfGW456L13_934at 1047.250 kb on + strand, within PfGW456L13_934at 1047.250 kb on + strand, within PfGW456L13_934at 1047.250 kb on + strand, within PfGW456L13_934at 1047.250 kb on + strand, within PfGW456L13_934at 1047.250 kb on + strand, within PfGW456L13_934at 1047.250 kb on + strand, within PfGW456L13_934at 1047.250 kb on + strand, within PfGW456L13_934at 1047.250 kb on + strand, within PfGW456L13_934at 1047.251 kb on - strand, within PfGW456L13_934at 1047.251 kb on - strand, within PfGW456L13_934at 1047.251 kb on - strand, within PfGW456L13_934at 1047.251 kb on - strand, within PfGW456L13_934at 1047.251 kb on - strand, within PfGW456L13_934at 1047.254 kb on + strand, within PfGW456L13_934at 1047.254 kb on + strand, within PfGW456L13_934at 1047.254 kb on + strand, within PfGW456L13_934at 1047.254 kb on + strand, within PfGW456L13_934at 1047.254 kb on + strand, within PfGW456L13_934at 1047.255 kb on - strand, within PfGW456L13_934at 1047.255 kb on - strand, within PfGW456L13_934at 1047.255 kb on - strand, within PfGW456L13_934at 1047.403 kb on + strand, within PfGW456L13_934at 1047.403 kb on + strand, within PfGW456L13_934at 1047.403 kb on + strand, within PfGW456L13_934at 1047.403 kb on + strand, within PfGW456L13_934at 1047.404 kb on - strand, within PfGW456L13_934at 1047.404 kb on - strand, within PfGW456L13_934at 1047.598 kb on + strand, within PfGW456L13_934at 1047.598 kb on + strand, within PfGW456L13_934at 1047.599 kb on - strand, within PfGW456L13_934at 1047.599 kb on - strand, within PfGW456L13_934at 1047.599 kb on - strand, within PfGW456L13_934at 1047.713 kb on + strandat 1047.713 kb on + strandat 1047.721 kb on + strandat 1047.721 kb on + strandat 1047.721 kb on + strandat 1047.721 kb on + strandat 1047.776 kb on + strandat 1047.776 kb on + strandat 1047.777 kb on - strandat 1047.777 kb on - strandat 1047.777 kb on - strandat 1047.777 kb on - strandat 1047.777 kb on - strandat 1047.777 kb on - strandat 1047.777 kb on - strandat 1047.849 kb on + strandat 1047.849 kb on + strandat 1047.854 kb on + strandat 1047.854 kb on + strandat 1047.854 kb on + strandat 1047.854 kb on + strandat 1047.854 kb on + strandat 1047.854 kb on + strandat 1047.854 kb on + strandat 1047.854 kb on + strandat 1047.855 kb on - strandat 1047.855 kb on - strandat 1047.883 kb on + strandat 1047.883 kb on + strandat 1047.884 kb on - strandat 1047.933 kb on + strandat 1047.933 kb on + strandat 1047.933 kb on + strandat 1047.933 kb on + strandat 1047.933 kb on + strandat 1047.933 kb on + strandat 1047.933 kb on + strandat 1047.934 kb on - strandat 1047.934 kb on - strandat 1047.934 kb on - strandat 1047.934 kb on - strandat 1047.934 kb on - strandat 1047.934 kb on - strandat 1047.948 kb on + strandat 1047.949 kb on - strandat 1047.949 kb on - strandat 1047.969 kb on + strandat 1047.969 kb on + strandat 1047.969 kb on + strandat 1047.970 kb on - strandat 1047.970 kb on - strandat 1048.069 kb on - strandat 1048.069 kb on - strandat 1048.069 kb on - strandat 1048.622 kb on - strand, within PfGW456L13_935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
1,045,810 + +0.2
1,045,810 + -0.2
1,045,810 + -0.9
1,046,011 - PfGW456L13_933 0.34 -0.6
1,046,011 - PfGW456L13_933 0.34 -0.5
1,046,149 - PfGW456L13_933 0.56 +0.8
1,046,256 + PfGW456L13_933 0.73 +0.1
1,046,256 + PfGW456L13_933 0.73 +1.0
1,046,256 + PfGW456L13_933 0.73 +0.4
1,046,256 + PfGW456L13_933 0.73 +0.7
1,046,257 - PfGW456L13_933 0.73 -1.4
1,046,257 - PfGW456L13_933 0.73 -0.3
1,046,257 - PfGW456L13_933 0.73 +0.5
1,046,274 + PfGW456L13_933 0.75 -0.5
1,046,274 + PfGW456L13_933 0.75 +0.1
1,046,275 - PfGW456L13_933 0.76 -1.0
1,046,275 - PfGW456L13_933 0.76 -0.5
1,046,275 - PfGW456L13_933 0.76 -0.9
1,046,338 - PfGW456L13_933 0.85 -1.2
1,046,338 - PfGW456L13_933 0.85 -1.7
1,046,368 - -0.1
1,046,368 - +0.6
1,046,368 - -0.8
1,046,368 - -0.4
1,046,368 - -0.0
1,046,543 - +0.9
1,046,598 + +0.2
1,046,598 + +0.8
1,046,599 - +0.7
1,046,599 - -0.4
1,046,692 + +0.4
1,046,947 + PfGW456L13_934 0.22 +0.1
1,046,948 - PfGW456L13_934 0.22 -0.1
1,046,948 - PfGW456L13_934 0.22 +1.1
1,046,948 - PfGW456L13_934 0.22 +0.2
1,047,117 + PfGW456L13_934 0.39 -1.0
1,047,118 - PfGW456L13_934 0.39 -0.0
1,047,118 - PfGW456L13_934 0.39 -0.7
1,047,187 + PfGW456L13_934 0.47 -0.1
1,047,187 + PfGW456L13_934 0.47 -1.4
1,047,187 + PfGW456L13_934 0.47 +1.3
1,047,187 + PfGW456L13_934 0.47 -0.9
1,047,187 + PfGW456L13_934 0.47 +0.2
1,047,187 + PfGW456L13_934 0.47 -0.4
1,047,187 + PfGW456L13_934 0.47 -1.7
1,047,187 + PfGW456L13_934 0.47 +0.4
1,047,187 + PfGW456L13_934 0.47 +0.3
1,047,188 - PfGW456L13_934 0.47 +1.4
1,047,188 - PfGW456L13_934 0.47 -0.2
1,047,188 - PfGW456L13_934 0.47 +0.9
1,047,188 - PfGW456L13_934 0.47 -0.5
1,047,188 - PfGW456L13_934 0.47 +0.4
1,047,188 - PfGW456L13_934 0.47 +0.6
1,047,188 - PfGW456L13_934 0.47 +0.9
1,047,188 - PfGW456L13_934 0.47 +0.2
1,047,188 - PfGW456L13_934 0.47 +0.1
1,047,250 + PfGW456L13_934 0.53 -0.7
1,047,250 + PfGW456L13_934 0.53 -0.6
1,047,250 + PfGW456L13_934 0.53 +0.8
1,047,250 + PfGW456L13_934 0.53 +0.5
1,047,250 + PfGW456L13_934 0.53 +0.2
1,047,250 + PfGW456L13_934 0.53 -0.9
1,047,250 + PfGW456L13_934 0.53 -1.1
1,047,250 + PfGW456L13_934 0.53 -0.5
1,047,250 + PfGW456L13_934 0.53 +0.3
1,047,251 - PfGW456L13_934 0.53 -0.8
1,047,251 - PfGW456L13_934 0.53 -2.7
1,047,251 - PfGW456L13_934 0.53 -0.8
1,047,251 - PfGW456L13_934 0.53 +0.0
1,047,251 - PfGW456L13_934 0.53 -0.9
1,047,254 + PfGW456L13_934 0.54 +0.6
1,047,254 + PfGW456L13_934 0.54 -0.7
1,047,254 + PfGW456L13_934 0.54 +0.4
1,047,254 + PfGW456L13_934 0.54 -0.2
1,047,254 + PfGW456L13_934 0.54 -2.2
1,047,255 - PfGW456L13_934 0.54 +0.2
1,047,255 - PfGW456L13_934 0.54 +0.1
1,047,255 - PfGW456L13_934 0.54 -0.5
1,047,403 + PfGW456L13_934 0.69 +0.8
1,047,403 + PfGW456L13_934 0.69 +0.3
1,047,403 + PfGW456L13_934 0.69 +0.3
1,047,403 + PfGW456L13_934 0.69 -0.7
1,047,404 - PfGW456L13_934 0.69 +0.1
1,047,404 - PfGW456L13_934 0.69 +0.1
1,047,598 + PfGW456L13_934 0.89 -0.6
1,047,598 + PfGW456L13_934 0.89 +0.3
1,047,599 - PfGW456L13_934 0.89 +0.0
1,047,599 - PfGW456L13_934 0.89 -0.6
1,047,599 - PfGW456L13_934 0.89 +0.0
1,047,713 + -0.7
1,047,713 + -0.3
1,047,721 + -0.2
1,047,721 + +0.3
1,047,721 + +0.0
1,047,721 + -0.3
1,047,776 + +0.4
1,047,776 + -0.5
1,047,777 - -0.2
1,047,777 - -2.2
1,047,777 - +0.5
1,047,777 - -0.3
1,047,777 - -0.3
1,047,777 - +0.3
1,047,777 - +0.6
1,047,849 + -0.3
1,047,849 + +0.3
1,047,854 + +0.2
1,047,854 + +0.9
1,047,854 + +0.5
1,047,854 + -0.7
1,047,854 + -0.8
1,047,854 + -0.1
1,047,854 + +0.0
1,047,854 + -0.6
1,047,855 - -0.2
1,047,855 - -0.8
1,047,883 + -0.2
1,047,883 + -0.7
1,047,884 - +0.0
1,047,933 + +0.2
1,047,933 + +0.1
1,047,933 + +0.4
1,047,933 + -1.2
1,047,933 + -0.9
1,047,933 + -0.2
1,047,933 + -0.5
1,047,934 - -0.5
1,047,934 - -0.9
1,047,934 - -0.6
1,047,934 - +0.2
1,047,934 - -0.3
1,047,934 - +0.6
1,047,948 + -0.8
1,047,949 - -0.3
1,047,949 - +0.4
1,047,969 + -0.2
1,047,969 + +0.5
1,047,969 + -0.6
1,047,970 - +0.9
1,047,970 - +0.3
1,048,069 - +0.1
1,048,069 - +1.1
1,048,069 - -1.3
1,048,622 - PfGW456L13_935 0.32 +0.8

Or see this region's nucleotide sequence