Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4585

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4583 and PfGW456L13_4584 are separated by 121 nucleotidesPfGW456L13_4584 and PfGW456L13_4585 are separated by 10 nucleotidesPfGW456L13_4585 and PfGW456L13_4586 are separated by 12 nucleotides PfGW456L13_4583 - PhaK-like protein, at 5,115,739 to 5,116,998 _4583 PfGW456L13_4584 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 5,117,120 to 5,117,512 _4584 PfGW456L13_4585 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 5,117,523 to 5,118,314 _4585 PfGW456L13_4586 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 5,118,327 to 5,119,691 _4586 Position (kb) 5117 5118 5119Strain fitness (log2 ratio) -2 -1 0 1 2at 5116.567 kb on + strand, within PfGW456L13_4583at 5116.567 kb on + strand, within PfGW456L13_4583at 5116.567 kb on + strand, within PfGW456L13_4583at 5116.567 kb on + strand, within PfGW456L13_4583at 5116.568 kb on - strand, within PfGW456L13_4583at 5116.568 kb on - strand, within PfGW456L13_4583at 5116.568 kb on - strand, within PfGW456L13_4583at 5116.568 kb on - strand, within PfGW456L13_4583at 5116.588 kb on + strand, within PfGW456L13_4583at 5116.588 kb on + strand, within PfGW456L13_4583at 5116.589 kb on - strand, within PfGW456L13_4583at 5116.589 kb on - strand, within PfGW456L13_4583at 5116.589 kb on - strand, within PfGW456L13_4583at 5116.606 kb on + strand, within PfGW456L13_4583at 5116.606 kb on + strand, within PfGW456L13_4583at 5116.606 kb on + strand, within PfGW456L13_4583at 5116.606 kb on + strand, within PfGW456L13_4583at 5116.606 kb on + strand, within PfGW456L13_4583at 5116.607 kb on - strand, within PfGW456L13_4583at 5116.607 kb on - strand, within PfGW456L13_4583at 5116.607 kb on - strand, within PfGW456L13_4583at 5116.690 kb on + strand, within PfGW456L13_4583at 5116.690 kb on + strand, within PfGW456L13_4583at 5116.691 kb on - strand, within PfGW456L13_4583at 5116.691 kb on - strand, within PfGW456L13_4583at 5116.691 kb on - strand, within PfGW456L13_4583at 5116.702 kb on + strand, within PfGW456L13_4583at 5116.702 kb on + strand, within PfGW456L13_4583at 5116.733 kb on + strand, within PfGW456L13_4583at 5116.733 kb on + strand, within PfGW456L13_4583at 5116.733 kb on + strand, within PfGW456L13_4583at 5116.734 kb on - strandat 5116.744 kb on + strand, within PfGW456L13_4583at 5116.744 kb on + strand, within PfGW456L13_4583at 5116.744 kb on + strand, within PfGW456L13_4583at 5116.744 kb on + strand, within PfGW456L13_4583at 5116.745 kb on - strand, within PfGW456L13_4583at 5116.745 kb on - strand, within PfGW456L13_4583at 5116.792 kb on + strand, within PfGW456L13_4583at 5116.792 kb on + strand, within PfGW456L13_4583at 5116.792 kb on + strand, within PfGW456L13_4583at 5116.792 kb on + strand, within PfGW456L13_4583at 5116.792 kb on + strand, within PfGW456L13_4583at 5116.868 kb on - strand, within PfGW456L13_4583at 5116.936 kb on + strandat 5116.936 kb on + strandat 5116.944 kb on + strandat 5116.979 kb on - strandat 5116.996 kb on + strandat 5116.997 kb on - strandat 5116.997 kb on - strandat 5117.042 kb on + strandat 5117.042 kb on + strandat 5117.058 kb on + strandat 5117.058 kb on + strandat 5117.122 kb on - strandat 5117.202 kb on + strand, within PfGW456L13_4584at 5117.202 kb on + strand, within PfGW456L13_4584at 5117.202 kb on + strand, within PfGW456L13_4584at 5117.202 kb on + strand, within PfGW456L13_4584at 5117.202 kb on + strand, within PfGW456L13_4584at 5117.203 kb on - strand, within PfGW456L13_4584at 5117.203 kb on - strand, within PfGW456L13_4584at 5117.494 kb on - strandat 5117.517 kb on + strandat 5117.518 kb on - strandat 5117.518 kb on - strandat 5117.599 kb on + strandat 5117.599 kb on + strandat 5117.599 kb on + strandat 5117.599 kb on + strandat 5117.765 kb on - strand, within PfGW456L13_4585at 5117.799 kb on - strand, within PfGW456L13_4585at 5118.113 kb on - strand, within PfGW456L13_4585at 5118.113 kb on - strand, within PfGW456L13_4585at 5118.113 kb on - strand, within PfGW456L13_4585at 5118.277 kb on + strandat 5118.303 kb on + strandat 5118.303 kb on + strandat 5118.304 kb on - strandat 5118.304 kb on - strandat 5118.391 kb on + strandat 5118.391 kb on + strandat 5118.391 kb on + strandat 5118.392 kb on - strandat 5118.392 kb on - strandat 5118.921 kb on - strand, within PfGW456L13_4586at 5119.253 kb on - strand, within PfGW456L13_4586

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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5,116,567 + PfGW456L13_4583 0.66 -0.6
5,116,567 + PfGW456L13_4583 0.66 -0.3
5,116,567 + PfGW456L13_4583 0.66 +0.0
5,116,567 + PfGW456L13_4583 0.66 -0.5
5,116,568 - PfGW456L13_4583 0.66 -0.1
5,116,568 - PfGW456L13_4583 0.66 -0.2
5,116,568 - PfGW456L13_4583 0.66 +0.2
5,116,568 - PfGW456L13_4583 0.66 +0.1
5,116,588 + PfGW456L13_4583 0.67 +1.6
5,116,588 + PfGW456L13_4583 0.67 -1.0
5,116,589 - PfGW456L13_4583 0.67 -0.3
5,116,589 - PfGW456L13_4583 0.67 +2.0
5,116,589 - PfGW456L13_4583 0.67 +0.6
5,116,606 + PfGW456L13_4583 0.69 -0.4
5,116,606 + PfGW456L13_4583 0.69 -0.2
5,116,606 + PfGW456L13_4583 0.69 +0.2
5,116,606 + PfGW456L13_4583 0.69 -0.9
5,116,606 + PfGW456L13_4583 0.69 +0.9
5,116,607 - PfGW456L13_4583 0.69 -0.1
5,116,607 - PfGW456L13_4583 0.69 +0.1
5,116,607 - PfGW456L13_4583 0.69 +0.1
5,116,690 + PfGW456L13_4583 0.75 +0.7
5,116,690 + PfGW456L13_4583 0.75 -0.1
5,116,691 - PfGW456L13_4583 0.76 -0.5
5,116,691 - PfGW456L13_4583 0.76 -0.6
5,116,691 - PfGW456L13_4583 0.76 -0.1
5,116,702 + PfGW456L13_4583 0.76 -0.6
5,116,702 + PfGW456L13_4583 0.76 -0.2
5,116,733 + PfGW456L13_4583 0.79 -0.0
5,116,733 + PfGW456L13_4583 0.79 +1.0
5,116,733 + PfGW456L13_4583 0.79 +0.4
5,116,734 - +1.1
5,116,744 + PfGW456L13_4583 0.80 -1.3
5,116,744 + PfGW456L13_4583 0.80 +0.5
5,116,744 + PfGW456L13_4583 0.80 -0.4
5,116,744 + PfGW456L13_4583 0.80 +0.3
5,116,745 - PfGW456L13_4583 0.80 +0.4
5,116,745 - PfGW456L13_4583 0.80 -0.4
5,116,792 + PfGW456L13_4583 0.84 -1.0
5,116,792 + PfGW456L13_4583 0.84 -0.0
5,116,792 + PfGW456L13_4583 0.84 +0.6
5,116,792 + PfGW456L13_4583 0.84 -0.7
5,116,792 + PfGW456L13_4583 0.84 -0.2
5,116,868 - PfGW456L13_4583 0.90 -0.1
5,116,936 + +0.4
5,116,936 + -0.0
5,116,944 + +0.1
5,116,979 - +0.4
5,116,996 + +0.3
5,116,997 - -0.8
5,116,997 - +0.8
5,117,042 + -0.7
5,117,042 + -0.7
5,117,058 + +0.3
5,117,058 + -0.6
5,117,122 - -1.1
5,117,202 + PfGW456L13_4584 0.21 +0.6
5,117,202 + PfGW456L13_4584 0.21 +1.2
5,117,202 + PfGW456L13_4584 0.21 -0.8
5,117,202 + PfGW456L13_4584 0.21 -0.4
5,117,202 + PfGW456L13_4584 0.21 -0.5
5,117,203 - PfGW456L13_4584 0.21 +0.8
5,117,203 - PfGW456L13_4584 0.21 -0.3
5,117,494 - -0.3
5,117,517 + +1.0
5,117,518 - -0.5
5,117,518 - -0.4
5,117,599 + +0.2
5,117,599 + -0.9
5,117,599 + -0.3
5,117,599 + +0.3
5,117,765 - PfGW456L13_4585 0.31 -1.9
5,117,799 - PfGW456L13_4585 0.35 -0.3
5,118,113 - PfGW456L13_4585 0.74 +0.4
5,118,113 - PfGW456L13_4585 0.74 -0.2
5,118,113 - PfGW456L13_4585 0.74 -0.0
5,118,277 + +0.7
5,118,303 + +0.6
5,118,303 + +0.6
5,118,304 - -1.0
5,118,304 - +0.5
5,118,391 + -0.1
5,118,391 + -0.2
5,118,391 + -0.1
5,118,392 - -0.5
5,118,392 - +0.3
5,118,921 - PfGW456L13_4586 0.44 -0.4
5,119,253 - PfGW456L13_4586 0.68 +1.5

Or see this region's nucleotide sequence