Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2369

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_2368 and PfGW456L13_2369 are separated by 89 nucleotidesPfGW456L13_2369 and PfGW456L13_2370 are separated by 38 nucleotidesPfGW456L13_2370 and PfGW456L13_2371 are separated by 11 nucleotides PfGW456L13_2368 - ThiJ/PfpI family protein, at 2,603,202 to 2,603,888 _2368 PfGW456L13_2369 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 2,603,978 to 2,604,961 _2369 PfGW456L13_2370 - hypothetical protein, at 2,605,000 to 2,605,632 _2370 PfGW456L13_2371 - hypothetical protein, at 2,605,644 to 2,606,033 _2371 Position (kb) 2603 2604 2605Strain fitness (log2 ratio) -3 -2 -1 0 1at 2602.978 kb on - strandat 2603.025 kb on + strandat 2603.083 kb on + strandat 2603.083 kb on + strandat 2603.083 kb on + strandat 2603.083 kb on + strandat 2603.083 kb on + strandat 2603.083 kb on + strandat 2603.084 kb on - strandat 2603.084 kb on - strandat 2603.084 kb on - strandat 2603.084 kb on - strandat 2603.084 kb on - strandat 2603.348 kb on - strand, within PfGW456L13_2368at 2603.348 kb on - strand, within PfGW456L13_2368at 2603.456 kb on + strand, within PfGW456L13_2368at 2603.508 kb on + strand, within PfGW456L13_2368at 2603.508 kb on + strand, within PfGW456L13_2368at 2603.508 kb on + strand, within PfGW456L13_2368at 2603.508 kb on + strand, within PfGW456L13_2368at 2603.509 kb on - strand, within PfGW456L13_2368at 2603.509 kb on - strand, within PfGW456L13_2368at 2603.518 kb on + strand, within PfGW456L13_2368at 2603.519 kb on - strand, within PfGW456L13_2368at 2603.602 kb on + strand, within PfGW456L13_2368at 2603.603 kb on - strand, within PfGW456L13_2368at 2603.603 kb on - strand, within PfGW456L13_2368at 2603.817 kb on + strand, within PfGW456L13_2368at 2603.817 kb on + strand, within PfGW456L13_2368at 2603.817 kb on + strand, within PfGW456L13_2368at 2603.818 kb on - strand, within PfGW456L13_2368at 2603.818 kb on - strand, within PfGW456L13_2368at 2603.825 kb on - strandat 2603.825 kb on - strandat 2603.825 kb on - strandat 2603.927 kb on + strandat 2603.927 kb on + strandat 2603.927 kb on + strandat 2603.927 kb on + strandat 2603.928 kb on - strandat 2603.928 kb on - strandat 2603.928 kb on - strandat 2603.928 kb on - strandat 2603.928 kb on - strandat 2603.936 kb on - strandat 2603.936 kb on - strandat 2603.997 kb on + strandat 2603.997 kb on + strandat 2603.997 kb on + strandat 2603.997 kb on + strandat 2603.997 kb on + strandat 2603.997 kb on + strandat 2603.998 kb on - strandat 2603.998 kb on - strandat 2603.998 kb on - strandat 2603.998 kb on - strandat 2603.998 kb on - strandat 2603.998 kb on - strandat 2603.998 kb on - strandat 2603.998 kb on - strandat 2604.021 kb on + strandat 2604.021 kb on + strandat 2604.021 kb on + strandat 2604.022 kb on - strandat 2604.070 kb on - strandat 2604.070 kb on - strandat 2604.070 kb on - strandat 2604.070 kb on - strandat 2604.193 kb on + strand, within PfGW456L13_2369at 2604.225 kb on - strand, within PfGW456L13_2369at 2604.225 kb on - strand, within PfGW456L13_2369at 2604.301 kb on - strand, within PfGW456L13_2369at 2604.432 kb on + strand, within PfGW456L13_2369at 2604.528 kb on + strand, within PfGW456L13_2369at 2604.528 kb on + strand, within PfGW456L13_2369at 2604.991 kb on - strandat 2605.066 kb on + strand, within PfGW456L13_2370at 2605.067 kb on - strand, within PfGW456L13_2370at 2605.097 kb on + strand, within PfGW456L13_2370at 2605.097 kb on + strand, within PfGW456L13_2370at 2605.097 kb on + strand, within PfGW456L13_2370at 2605.097 kb on + strand, within PfGW456L13_2370at 2605.097 kb on + strand, within PfGW456L13_2370at 2605.098 kb on - strand, within PfGW456L13_2370at 2605.098 kb on - strand, within PfGW456L13_2370at 2605.098 kb on - strand, within PfGW456L13_2370at 2605.098 kb on - strand, within PfGW456L13_2370at 2605.098 kb on - strand, within PfGW456L13_2370at 2605.098 kb on - strand, within PfGW456L13_2370at 2605.098 kb on - strand, within PfGW456L13_2370at 2605.098 kb on - strand, within PfGW456L13_2370at 2605.098 kb on - strand, within PfGW456L13_2370at 2605.098 kb on - strand, within PfGW456L13_2370at 2605.098 kb on - strand, within PfGW456L13_2370at 2605.104 kb on + strand, within PfGW456L13_2370at 2605.105 kb on - strand, within PfGW456L13_2370at 2605.105 kb on - strand, within PfGW456L13_2370at 2605.145 kb on + strand, within PfGW456L13_2370at 2605.145 kb on + strand, within PfGW456L13_2370at 2605.145 kb on + strand, within PfGW456L13_2370at 2605.145 kb on + strand, within PfGW456L13_2370at 2605.146 kb on - strand, within PfGW456L13_2370at 2605.146 kb on - strand, within PfGW456L13_2370at 2605.146 kb on - strand, within PfGW456L13_2370at 2605.146 kb on - strand, within PfGW456L13_2370at 2605.146 kb on - strand, within PfGW456L13_2370at 2605.226 kb on + strand, within PfGW456L13_2370at 2605.226 kb on + strand, within PfGW456L13_2370at 2605.227 kb on - strand, within PfGW456L13_2370at 2605.227 kb on - strand, within PfGW456L13_2370at 2605.227 kb on - strand, within PfGW456L13_2370at 2605.227 kb on - strand, within PfGW456L13_2370at 2605.370 kb on - strand, within PfGW456L13_2370at 2605.370 kb on - strand, within PfGW456L13_2370at 2605.370 kb on - strand, within PfGW456L13_2370at 2605.430 kb on + strand, within PfGW456L13_2370at 2605.549 kb on + strand, within PfGW456L13_2370at 2605.572 kb on + strandat 2605.573 kb on - strandat 2605.573 kb on - strandat 2605.645 kb on + strandat 2605.663 kb on - strandat 2605.675 kb on + strandat 2605.675 kb on + strandat 2605.675 kb on + strandat 2605.675 kb on + strandat 2605.676 kb on - strandat 2605.676 kb on - strandat 2605.795 kb on + strand, within PfGW456L13_2371at 2605.795 kb on + strand, within PfGW456L13_2371at 2605.795 kb on + strand, within PfGW456L13_2371at 2605.795 kb on + strand, within PfGW456L13_2371at 2605.795 kb on + strand, within PfGW456L13_2371at 2605.796 kb on - strand, within PfGW456L13_2371at 2605.796 kb on - strand, within PfGW456L13_2371at 2605.796 kb on - strand, within PfGW456L13_2371at 2605.810 kb on + strand, within PfGW456L13_2371

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
2,602,978 - +0.5
2,603,025 + -0.1
2,603,083 + +0.7
2,603,083 + -0.1
2,603,083 + +0.6
2,603,083 + +1.1
2,603,083 + -0.7
2,603,083 + +0.9
2,603,084 - -1.6
2,603,084 - -1.4
2,603,084 - +0.4
2,603,084 - +1.5
2,603,084 - +0.2
2,603,348 - PfGW456L13_2368 0.21 -0.8
2,603,348 - PfGW456L13_2368 0.21 +0.8
2,603,456 + PfGW456L13_2368 0.37 -0.3
2,603,508 + PfGW456L13_2368 0.45 +0.2
2,603,508 + PfGW456L13_2368 0.45 -0.1
2,603,508 + PfGW456L13_2368 0.45 +0.3
2,603,508 + PfGW456L13_2368 0.45 +0.0
2,603,509 - PfGW456L13_2368 0.45 -0.8
2,603,509 - PfGW456L13_2368 0.45 +0.0
2,603,518 + PfGW456L13_2368 0.46 -0.9
2,603,519 - PfGW456L13_2368 0.46 +0.2
2,603,602 + PfGW456L13_2368 0.58 -0.1
2,603,603 - PfGW456L13_2368 0.58 +0.2
2,603,603 - PfGW456L13_2368 0.58 -0.4
2,603,817 + PfGW456L13_2368 0.90 -0.3
2,603,817 + PfGW456L13_2368 0.90 -1.3
2,603,817 + PfGW456L13_2368 0.90 -0.7
2,603,818 - PfGW456L13_2368 0.90 -0.7
2,603,818 - PfGW456L13_2368 0.90 -0.2
2,603,825 - -0.3
2,603,825 - +0.8
2,603,825 - -1.5
2,603,927 + -0.8
2,603,927 + +0.6
2,603,927 + +1.6
2,603,927 + -0.5
2,603,928 - -0.4
2,603,928 - +0.2
2,603,928 - -0.8
2,603,928 - +0.1
2,603,928 - +0.2
2,603,936 - +0.4
2,603,936 - -0.4
2,603,997 + +0.3
2,603,997 + -0.2
2,603,997 + -0.1
2,603,997 + -0.1
2,603,997 + +0.5
2,603,997 + -0.0
2,603,998 - +1.2
2,603,998 - +0.7
2,603,998 - +0.0
2,603,998 - +0.2
2,603,998 - +0.1
2,603,998 - -0.2
2,603,998 - -0.1
2,603,998 - +0.2
2,604,021 + +0.7
2,604,021 + +0.7
2,604,021 + -0.1
2,604,022 - -0.0
2,604,070 - -0.6
2,604,070 - -0.9
2,604,070 - -0.8
2,604,070 - -0.9
2,604,193 + PfGW456L13_2369 0.22 -0.0
2,604,225 - PfGW456L13_2369 0.25 +0.9
2,604,225 - PfGW456L13_2369 0.25 +0.9
2,604,301 - PfGW456L13_2369 0.33 +0.9
2,604,432 + PfGW456L13_2369 0.46 +1.3
2,604,528 + PfGW456L13_2369 0.56 -0.9
2,604,528 + PfGW456L13_2369 0.56 +0.0
2,604,991 - +0.7
2,605,066 + PfGW456L13_2370 0.10 -0.0
2,605,067 - PfGW456L13_2370 0.11 -0.5
2,605,097 + PfGW456L13_2370 0.15 +0.3
2,605,097 + PfGW456L13_2370 0.15 -1.1
2,605,097 + PfGW456L13_2370 0.15 -0.3
2,605,097 + PfGW456L13_2370 0.15 -1.0
2,605,097 + PfGW456L13_2370 0.15 +0.2
2,605,098 - PfGW456L13_2370 0.15 +0.4
2,605,098 - PfGW456L13_2370 0.15 +0.3
2,605,098 - PfGW456L13_2370 0.15 +1.0
2,605,098 - PfGW456L13_2370 0.15 +1.2
2,605,098 - PfGW456L13_2370 0.15 -1.1
2,605,098 - PfGW456L13_2370 0.15 -1.2
2,605,098 - PfGW456L13_2370 0.15 -0.1
2,605,098 - PfGW456L13_2370 0.15 +0.0
2,605,098 - PfGW456L13_2370 0.15 -0.2
2,605,098 - PfGW456L13_2370 0.15 -0.7
2,605,098 - PfGW456L13_2370 0.15 +0.0
2,605,104 + PfGW456L13_2370 0.16 +0.8
2,605,105 - PfGW456L13_2370 0.17 -0.6
2,605,105 - PfGW456L13_2370 0.17 -0.6
2,605,145 + PfGW456L13_2370 0.23 +0.6
2,605,145 + PfGW456L13_2370 0.23 +0.1
2,605,145 + PfGW456L13_2370 0.23 +1.1
2,605,145 + PfGW456L13_2370 0.23 +0.0
2,605,146 - PfGW456L13_2370 0.23 +0.3
2,605,146 - PfGW456L13_2370 0.23 -0.8
2,605,146 - PfGW456L13_2370 0.23 +0.4
2,605,146 - PfGW456L13_2370 0.23 +1.1
2,605,146 - PfGW456L13_2370 0.23 -0.5
2,605,226 + PfGW456L13_2370 0.36 -0.5
2,605,226 + PfGW456L13_2370 0.36 -0.3
2,605,227 - PfGW456L13_2370 0.36 -1.9
2,605,227 - PfGW456L13_2370 0.36 +0.0
2,605,227 - PfGW456L13_2370 0.36 -0.2
2,605,227 - PfGW456L13_2370 0.36 +0.1
2,605,370 - PfGW456L13_2370 0.58 -0.8
2,605,370 - PfGW456L13_2370 0.58 +0.1
2,605,370 - PfGW456L13_2370 0.58 +0.2
2,605,430 + PfGW456L13_2370 0.68 +0.0
2,605,549 + PfGW456L13_2370 0.87 -0.6
2,605,572 + +0.3
2,605,573 - +0.1
2,605,573 - -3.3
2,605,645 + +0.4
2,605,663 - -0.1
2,605,675 + +0.7
2,605,675 + +0.1
2,605,675 + -1.3
2,605,675 + -1.0
2,605,676 - +1.0
2,605,676 - +0.3
2,605,795 + PfGW456L13_2371 0.39 +0.0
2,605,795 + PfGW456L13_2371 0.39 +0.9
2,605,795 + PfGW456L13_2371 0.39 +0.2
2,605,795 + PfGW456L13_2371 0.39 -0.9
2,605,795 + PfGW456L13_2371 0.39 +0.1
2,605,796 - PfGW456L13_2371 0.39 -0.7
2,605,796 - PfGW456L13_2371 0.39 -0.4
2,605,796 - PfGW456L13_2371 0.39 +0.0
2,605,810 + PfGW456L13_2371 0.43 +0.8

Or see this region's nucleotide sequence